mRNA_H-canaliculatus_F_contig10177.203.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: D8LPV2_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV2_ECTSI) HSP 1 Score: 142 bits (359), Expect = 5.330e-39 Identity = 68/83 (81.93%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 1 KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +VREVT+IK A+VPLVKF HV SG+QVDVCFDQ G+ SG+AA+ MMRQMQPVRPLVMVLKAYMGQRKLNETYHGG+GSFLLQ Sbjct: 351 EVREVTVIKSARVPLVKFVHVGSGVQVDVCFDQESGMKSGRAARAMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGVGSFLLQ 433
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.680e-37 Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 1 KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +VREVT+IK A+VPLVKF HV SG+QVDVCFDQ G+ SG+AA+ MMRQMQPVRPLVMVLKAYM QRKLNETYHGGIGSFLLQ Sbjct: 272 EVREVTVIKKARVPLVKFVHVGSGVQVDVCFDQESGMQSGRAARAMMRQMQPVRPLVMVLKAYMAQRKLNETYHGGIGSFLLQ 354
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A3M6VIB7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIB7_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.580e-18 Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GGIGSFLLQ Sbjct: 213 VIDKARIPIVKMVHKTSDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKCFMAQRGLNETYSGGIGSFLLQ 289
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A484DRJ3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRJ3_BRELC) HSP 1 Score: 87.4 bits (215), Expect = 2.720e-18 Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H SGI VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ Sbjct: 255 VIDKARIPIVKMVHKVSGIHVDVSFNIAGGLATGDLVKHFMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 331
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A7S4DIS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIS6_HETAK) HSP 1 Score: 86.7 bits (213), Expect = 3.680e-18 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H S + VD+ F+Q GLA+G + MR+ PVRPL++V K ++ QR+LNETY GG+GSFLLQ Sbjct: 183 VIDSARIPIVKLRHKESQVHVDISFNQPSGLATGACVQRFMRKFPPVRPLLLVAKKFLQQRELNETYTGGVGSFLLQ 259
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: M4B1R5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1R5_HYAAE) HSP 1 Score: 86.7 bits (213), Expect = 5.010e-18 Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ Sbjct: 236 VIHKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHFMRVYPSFRPLTLVLKYFMAQRGLNETYSGGVGSFLLQ 312
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A0W8D8H1_PHYNI (Non-canonical poly(A) RNA polymerase PAPD5 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D8H1_PHYNI) HSP 1 Score: 86.3 bits (212), Expect = 6.630e-18 Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ Sbjct: 213 VIDKARIPIVKMVHKESNIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYSGGVGSFLLQ 289
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: H3GMU5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMU5_PHYRM) HSP 1 Score: 85.9 bits (211), Expect = 9.090e-18 Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ Sbjct: 213 VIDKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 289
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: G4YH03_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YH03_PHYSP) HSP 1 Score: 85.9 bits (211), Expect = 9.220e-18 Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H +S I VDV F+ AGGLA+G K MR RPL +VLK +M QR LNETY GG+GSFLLQ Sbjct: 222 VIDKARIPIVKMVHKASDIHVDVSFNVAGGLATGDLVKHYMRVYPSFRPLTLVLKYFMAQRGLNETYTGGVGSFLLQ 298
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Match: A0A225WB21_9STRA (Poly(A) RNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WB21_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.690e-17 Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 19 LIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGIGSFLLQ 249 +I A++P+VK H SS I VDV F+ AGGLA+G K MR RPL +VLK + QR LNETY GG+GSFLLQ Sbjct: 207 VIDKARIPIVKMVHKSSDIHVDVSFNVAGGLATGDLVKHYMRVYPAFRPLTLVLKYFTAQRGLNETYSGGVGSFLLQ 283 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10177.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10177.203.1 >prot_H-canaliculatus_F_contig10177.203.1 ID=prot_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp KVREVTLIKGAKVPLVKFTHVSSGIQVDVCFDQAGGLASGKAAKDMMRQMback to top mRNA from alignment at H-canaliculatus_F_contig10177:4145..5063- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10177.203.1 ID=mRNA_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=919bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10177:4145..5063- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10177:4145..5063- >mRNA_H-canaliculatus_F_contig10177.203.1 ID=mRNA_H-canaliculatus_F_contig10177.203.1|Name=mRNA_H-canaliculatus_F_contig10177.203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10177:4145..5063- (Hapterophycus canaliculatus Oshoro5f female)back to top |