Homology
BLAST of mRNA_H-canaliculatus_F_contig10170.198.1 vs. uniprot
Match: D7FP45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP45_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 5.800e-22 Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 2 Query: 35 SSYDDLLASATGLQVKQRTEFRSEADEAFKLTVRQDVRSKAGLKQLGRSILVFDFQPAAAITASNSP 235
+SYD+LLASAT +VK +TEFRS ADEA KLTVRQDV KAG K+LGRS+LVFDFQPA AIT++NSP
Sbjct: 5 ASYDELLASAT--EVKHKTEFRSNADEALKLTVRQDVTRKAGFKKLGRSVLVFDFQPAGAITSTNSP 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 362 |
| Cds size | 333 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.6123798-CDS-H-canaliculatus_F_contig10170:886..1159 | 1622928646.6123798-CDS-H-canaliculatus_F_contig10170:886..1159 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10170 887..1159 - |
| 1696845511.6575387-CDS-H-canaliculatus_F_contig10170:886..1159 | 1696845511.6575387-CDS-H-canaliculatus_F_contig10170:886..1159 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10170 887..1159 - |
| 1622928646.6220572-CDS-H-canaliculatus_F_contig10170:1772..1832 | 1622928646.6220572-CDS-H-canaliculatus_F_contig10170:1772..1832 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10170 1773..1832 - |
| 1696845511.6667655-CDS-H-canaliculatus_F_contig10170:1772..1832 | 1696845511.6667655-CDS-H-canaliculatus_F_contig10170:1772..1832 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10170 1773..1832 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.6310935-UTR-H-canaliculatus_F_contig10170:1832..1860 | 1622928646.6310935-UTR-H-canaliculatus_F_contig10170:1832..1860 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10170 1833..1860 - |
| 1696845511.6750836-UTR-H-canaliculatus_F_contig10170:1832..1860 | 1696845511.6750836-UTR-H-canaliculatus_F_contig10170:1832..1860 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10170 1833..1860 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10170.198.1 >prot_H-canaliculatus_F_contig10170.198.1 ID=prot_H-canaliculatus_F_contig10170.198.1|Name=mRNA_H-canaliculatus_F_contig10170.198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
MASSYDDLLASATGLQVKQRTEFRSEADEAFKLTVRQDVRSKAGLKQLGR
SILVFDFQPAAAITASNSPSTSQRSTNAGIESNTEATAGSFVRDQAPVDI
AIDAAEPIENA back to topmRNA from alignment at H-canaliculatus_F_contig10170:887..1860- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10170.198.1 ID=mRNA_H-canaliculatus_F_contig10170.198.1|Name=mRNA_H-canaliculatus_F_contig10170.198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=974bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10170:887..1860- (Hapterophycus canaliculatus Oshoro5f female)
CTGGACTCTGGACGCTCGCTCGAACCACATGGCTTCCTCGTACGATGATC
TCTTGGCGTCGGCGACAGGCTTGCAAGTGAAGCAAAGGGTGAGTGTAAGA
TGATGAGATGGTTCGTATTGCGTGGGCACAACGAGAGGGGGAAAGCATAC
ATCCAAACCCCAACCAATATGTCGCCGTTGTCATGGAAATCAAGATCAAT
TTCGGGGACTCGAATCTCCGCCCGGCGCAACGCACAAAGGGCAGCACGGG
CAGCGTGCACATGGCAGAGAAAAAGGTGACTGGGTGCGGTCGTTGATTTC
TGCAGAGAAAAATCATGGGTCCAGTCCCGAATCGCTTTGTTGGGCGATGG
TTGCTGTGTTTGGTGTGGCTGCTGCTCTCGGCAAGACTCGACGGGAAGTT
TGATCGAAAAATTATCCCGATGTGCCGAGGAACATGAATCCAACGGCAAA
GAGAGTCGTTCTAAAAAGATGCCCTGCGTCGCGGTAGGAAGAGCAGGCAG
CGGCCGTTCACTGATTTGTCTTCTGTCCGGCTGCCGCATCGAGCTGAGCT
TTTGATGTGACAGACAGATCCTGTGCGATCTCGCAGCTCGCGCATCGAGA
GAGACGAGACACTCAGGTGTGTCTGCTGTACTGATGCACGCGTCCAATAT
CCTGACGGCTATCAACTTCTGCTGTCGCGCCCCCTGAACATGCGTTTCAA
GACGGAGTTCAGATCGGAAGCCGACGAAGCTTTCAAGCTCACGGTGCGAC
AGGACGTCAGGAGCAAGGCCGGCCTGAAACAACTAGGCCGGTCCATCCTC
GTTTTCGACTTCCAGCCGGCCGCCGCGATCACGGCCTCGAACAGCCCCAG
CACCTCACAACGGTCAACGAACGCCGGTATCGAAAGTAATACCGAGGCCA
CCGCCGGCAGCTTCGTCAGAGACCAGGCACCGGTTGACATCGCCATCGAT
GCGGCGGAACCGATAGAGAATGCA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10170:887..1860- >mRNA_H-canaliculatus_F_contig10170.198.1 ID=mRNA_H-canaliculatus_F_contig10170.198.1|Name=mRNA_H-canaliculatus_F_contig10170.198.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10170:887..1860- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTTCCTCGTACGATGATCTCTTGGCGTCGGCGACAGGCTTGCAAGT
GAAGCAAAGGATGGCTTCCTCGTACGATGATCTCTTGGCGTCGGCGACAG
GCTTGCAAGTGAAGCAAAGGACGGAGTTCAGATCGGAAGCCGACGAAGCT
TTCAAGCTCACGGTGCGACAGGACGTCAGGAGCAAGGCCGGCCTGAAACA
ACTAGGCCGGTCCATCCTCGTTTTCGACTTCCAGCCGGCCGCCGCGATCA
CGGCCTCGAACAGCCCCAGCACCTCACAACGGTCAACGAACGCCGGTATC
GAAAGTAATACCGAGGCCACCGCCGGCAGCTTCGTCAGAGACCAGGCACC
GGTTGACATCGCCATCGATGCGGCGGAACCGATAGAGAATGCAACGGAGT
TCAGATCGGAAGCCGACGAAGCTTTCAAGCTCACGGTGCGACAGGACGTC
AGGAGCAAGGCCGGCCTGAAACAACTAGGCCGGTCCATCCTCGTTTTCGA
CTTCCAGCCGGCCGCCGCGATCACGGCCTCGAACAGCCCCAGCACCTCAC
AACGGTCAACGAACGCCGGTATCGAAAGTAATACCGAGGCCACCGCCGGC
AGCTTCGTCAGAGACCAGGCACCGGTTGACATCGCCATCGATGCGGCGGA
ACCGATAGAGAATGCA back to top
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