Homology
BLAST of mRNA_H-canaliculatus_F_contig1017.197.1 vs. uniprot
Match: D8LU63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU63_ECTSI) HSP 1 Score: 131 bits (330), Expect = 3.370e-28 Identity = 197/482 (40.87%), Postives = 232/482 (48.13%), Query Frame = 1 Query: 532 RTGAQLDFHGNVRMDVPFLMDGAFLEK--GDTGDAALS--VDSGQAELRSILLGTL-DAEDEEDASPDAKLKAATKSFASRTYRGGRTLVGLDTSASNANANETARPPTGISSXXXXXXXXXXXTSMGPGRLFPASTGXXXXXXXXXXXXXXXNGPFES--VIAGGGG---GTGLSGETYADFGLDNLPELTSNDFTGLAAFDTG--GAHLAREAHQQHN-----TLPRQPDSPNFAAATSGSYAPSFVNVRLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLVAAKMPA-----------------EEAWWDILEGEEFVAMPEPVWGVA--LDAQSVEEESLRGNPRG--WQRGGGG--AAERSRGMTENMDISSPGLGGDELGGGHAPGRXXXXXXXSAAAVPSYLSKSRPLLPPCSSSLTVT--AAGLGGVLVGPGDECFAGDSSRGNRRDRNCEV 1851
R + F G+ RMD FLMDG + G G A+L VD+G+AELRSILLG D + D+ D L A S ++R + + + +E RP G+ G GR AS G FES +A GGG + + DFGLD+LPEL+SNDF GL +TG +L R Q H T R P AA +G ++ S VRLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EEAWW++LEGEEFVAMPEP WG A LD QS+ EE R NPRG W+ GGG E +RGM E+ G P S AA LS SSS+T AAGLGGV+V PGDE F+GD S + RN V
Sbjct: 360 RVAVDISFRGDTRMDGSFLMDGGSFGETSGGAGGASLGAGVDTGRAELRSILLGDAGDTPEVRDSVADGGLSFAVPSSSARVAKPAPGVQAV---------HEALRPAGGL----------------GFGRDSAASRGGEHAGARSS---------FESGGSLASGGGTAPAPAPAAGVFVDFGLDHLPELSSNDFAGLGGVETGVCANYLPRVTLQHHRYHQQRTASRGPYDLAGAAVAAGVFS-SCEGVRLGSDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAWWEVLEGEEFVAMPEPTWGGAGGLDTQSMMEEPFRTNPRGCGWRSDGGGRGGVETNRGMAES---------------GRGPHGDGGRTVASHAATARSLSLD-------SSSITAATAAAGLGGVVVMPGDEGFSGDMSGRDSCGRNGGV 784
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1860 |
| Cds size | 1860 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.5794098-CDS-H-canaliculatus_F_contig1017:29565..31425 | 1622928646.5794098-CDS-H-canaliculatus_F_contig1017:29565..31425 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1017 29566..31425 + |
| 1696845511.645845-CDS-H-canaliculatus_F_contig1017:29565..31425 | 1696845511.645845-CDS-H-canaliculatus_F_contig1017:29565..31425 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1017 29566..31425 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1017.197.1 >prot_H-canaliculatus_F_contig1017.197.1 ID=prot_H-canaliculatus_F_contig1017.197.1|Name=mRNA_H-canaliculatus_F_contig1017.197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=620bp
VRRPSYLHREEVGSDGDRAARFGNAGGGGGGNSSGRGNATGGGGDRFKSA
KTEERKPASVPPSLVPLAKRGEDLEAAGAGASSNTCPDAGNLGCGSGRVR
PRGGGTGLGQAAASVTAGLLEPRQGSGVSTSSSRGGGGSGDGGKAAKFHT
RFPAAGGGREGGGRGAGQAEAGVGKVKRTGAQLDFHGNVRMDVPFLMDGA
FLEKGDTGDAALSVDSGQAELRSILLGTLDAEDEEDASPDAKLKAATKSF
ASRTYRGGRTLVGLDTSASNANANETARPPTGISSSSTSSTSCCSSTSMG
PGRLFPASTGTGTGTGTGRGTGTGTNGPFESVIAGGGGGTGLSGETYADF
GLDNLPELTSNDFTGLAAFDTGGAHLAREAHQQHNTLPRQPDSPNFAAAT
SGSYAPSFVNVRLGGGGSLPPMESSSGVSDDVSSEAFSSSDGSSSVSVAA
AGGEGSAGGASSDTLVAAKMPAEEAWWDILEGEEFVAMPEPVWGVALDAQ
SVEEESLRGNPRGWQRGGGGAAERSRGMTENMDISSPGLGGDELGGGHAP
GRGAAPSEGSAAAVPSYLSKSRPLLPPCSSSLTVTAAGLGGVLVGPGDEC
FAGDSSRGNRRDRNCEVGRG back to topmRNA from alignment at H-canaliculatus_F_contig1017:29566..31425+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1017.197.1 ID=mRNA_H-canaliculatus_F_contig1017.197.1|Name=mRNA_H-canaliculatus_F_contig1017.197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1860bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1017:29566..31425+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCGACGTCCAAGCTACTTGCATAGGGAAGAGGTCGGCTCTGACGGTGA
CAGGGCCGCGAGGTTCGGCAATGCTGGTGGCGGCGGCGGCGGCAACAGCA
GCGGCCGGGGCAACGCTACCGGGGGCGGAGGCGACAGGTTCAAGAGCGCT
AAGACCGAAGAGCGGAAACCCGCGTCGGTACCGCCCTCTCTGGTGCCCCT
TGCCAAGCGCGGAGAGGACCTAGAAGCCGCTGGAGCTGGAGCTAGCTCGA
ACACGTGTCCTGACGCGGGGAACTTGGGGTGCGGCTCTGGCCGTGTACGC
CCGCGGGGAGGGGGCACAGGGCTCGGGCAGGCTGCGGCCTCCGTGACCGC
CGGTCTTCTCGAGCCGCGGCAGGGGAGCGGCGTGTCCACCTCCTCCTCTC
GCGGCGGGGGTGGTAGTGGCGACGGGGGCAAGGCAGCCAAGTTCCACACG
AGGTTTCCCGCCGCAGGAGGCGGACGAGAAGGAGGAGGAAGAGGAGCAGG
GCAGGCAGAGGCAGGGGTCGGCAAGGTGAAAAGAACGGGAGCGCAACTCG
ACTTCCACGGGAACGTAAGGATGGACGTGCCGTTTTTGATGGACGGCGCT
TTCCTGGAGAAGGGCGACACGGGAGACGCGGCCCTGAGCGTGGACAGCGG
CCAGGCAGAGCTACGCAGCATCCTGCTCGGGACGTTGGACGCGGAGGACG
AGGAGGACGCGTCGCCCGATGCGAAGCTTAAAGCCGCCACCAAGAGCTTC
GCCTCTCGAACCTACAGAGGCGGGAGAACGCTGGTTGGCCTGGACACCTC
CGCCTCCAACGCCAACGCCAACGAGACTGCACGACCGCCGACTGGCATCA
GCTCCAGCAGCACCAGCAGCACCAGCTGTTGCAGCAGCACCAGCATGGGG
CCCGGGCGGCTTTTTCCGGCGTCAACGGGAACGGGAACGGGAACGGGAAC
AGGAAGAGGAACAGGAACAGGAACGAACGGGCCGTTCGAGAGCGTGATCG
CCGGCGGGGGTGGTGGAACGGGCTTGTCAGGCGAGACCTACGCGGATTTC
GGTCTCGACAACCTGCCCGAGCTCACCAGCAACGACTTCACGGGCCTCGC
CGCGTTCGACACCGGCGGCGCTCACCTGGCCAGAGAGGCCCACCAACAGC
ACAACACATTGCCTCGACAGCCCGACTCGCCAAACTTCGCCGCCGCCACC
TCTGGGTCCTATGCGCCGAGCTTCGTGAACGTCCGGCTCGGGGGCGGCGG
GTCGCTGCCTCCGATGGAGTCCTCGAGCGGGGTGAGCGACGACGTTTCGT
CGGAGGCGTTTTCTTCTTCCGACGGGTCGTCCTCGGTGTCCGTCGCGGCT
GCGGGGGGGGAGGGGTCGGCGGGGGGAGCGAGCAGCGACACGCTCGTGGC
GGCCAAGATGCCAGCCGAGGAGGCCTGGTGGGACATCCTCGAGGGGGAGG
AGTTCGTGGCCATGCCGGAGCCGGTCTGGGGAGTGGCTCTAGACGCCCAG
AGCGTGGAAGAGGAGTCGCTCCGAGGGAACCCTCGCGGTTGGCAGAGGGG
CGGCGGGGGCGCCGCAGAGCGCAGCAGGGGCATGACCGAGAACATGGACA
TCAGCTCTCCGGGGCTCGGCGGTGACGAGCTCGGAGGGGGCCACGCCCCG
GGCAGGGGCGCTGCCCCCAGCGAGGGAAGCGCAGCGGCGGTGCCGTCGTA
CTTGTCGAAGAGCCGTCCGTTGCTGCCACCGTGTAGTTCGTCGCTGACGG
TGACTGCGGCGGGGCTCGGAGGCGTTCTAGTCGGACCGGGCGACGAGTGT
TTCGCGGGGGACAGCAGCAGGGGCAACCGCAGGGACCGCAACTGTGAGGT
CGGCCGGGGC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1017:29566..31425+ >mRNA_H-canaliculatus_F_contig1017.197.1 ID=mRNA_H-canaliculatus_F_contig1017.197.1|Name=mRNA_H-canaliculatus_F_contig1017.197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1017:29566..31425+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCGACGTCCAAGCTACTTGCATAGGGAAGAGGTCGGCTCTGACGGTGA
CAGGGCCGCGAGGTTCGGCAATGCTGGTGGCGGCGGCGGCGGCAACAGCA
GCGGCCGGGGCAACGCTACCGGGGGCGGAGGCGACAGGTTCAAGAGCGCT
AAGACCGAAGAGCGGAAACCCGCGTCGGTACCGCCCTCTCTGGTGCCCCT
TGCCAAGCGCGGAGAGGACCTAGAAGCCGCTGGAGCTGGAGCTAGCTCGA
ACACGTGTCCTGACGCGGGGAACTTGGGGTGCGGCTCTGGCCGTGTACGC
CCGCGGGGAGGGGGCACAGGGCTCGGGCAGGCTGCGGCCTCCGTGACCGC
CGGTCTTCTCGAGCCGCGGCAGGGGAGCGGCGTGTCCACCTCCTCCTCTC
GCGGCGGGGGTGGTAGTGGCGACGGGGGCAAGGCAGCCAAGTTCCACACG
AGGTTTCCCGCCGCAGGAGGCGGACGAGAAGGAGGAGGAAGAGGAGCAGG
GCAGGCAGAGGCAGGGGTCGGCAAGGTGAAAAGAACGGGAGCGCAACTCG
ACTTCCACGGGAACGTAAGGATGGACGTGCCGTTTTTGATGGACGGCGCT
TTCCTGGAGAAGGGCGACACGGGAGACGCGGCCCTGAGCGTGGACAGCGG
CCAGGCAGAGCTACGCAGCATCCTGCTCGGGACGTTGGACGCGGAGGACG
AGGAGGACGCGTCGCCCGATGCGAAGCTTAAAGCCGCCACCAAGAGCTTC
GCCTCTCGAACCTACAGAGGCGGGAGAACGCTGGTTGGCCTGGACACCTC
CGCCTCCAACGCCAACGCCAACGAGACTGCACGACCGCCGACTGGCATCA
GCTCCAGCAGCACCAGCAGCACCAGCTGTTGCAGCAGCACCAGCATGGGG
CCCGGGCGGCTTTTTCCGGCGTCAACGGGAACGGGAACGGGAACGGGAAC
AGGAAGAGGAACAGGAACAGGAACGAACGGGCCGTTCGAGAGCGTGATCG
CCGGCGGGGGTGGTGGAACGGGCTTGTCAGGCGAGACCTACGCGGATTTC
GGTCTCGACAACCTGCCCGAGCTCACCAGCAACGACTTCACGGGCCTCGC
CGCGTTCGACACCGGCGGCGCTCACCTGGCCAGAGAGGCCCACCAACAGC
ACAACACATTGCCTCGACAGCCCGACTCGCCAAACTTCGCCGCCGCCACC
TCTGGGTCCTATGCGCCGAGCTTCGTGAACGTCCGGCTCGGGGGCGGCGG
GTCGCTGCCTCCGATGGAGTCCTCGAGCGGGGTGAGCGACGACGTTTCGT
CGGAGGCGTTTTCTTCTTCCGACGGGTCGTCCTCGGTGTCCGTCGCGGCT
GCGGGGGGGGAGGGGTCGGCGGGGGGAGCGAGCAGCGACACGCTCGTGGC
GGCCAAGATGCCAGCCGAGGAGGCCTGGTGGGACATCCTCGAGGGGGAGG
AGTTCGTGGCCATGCCGGAGCCGGTCTGGGGAGTGGCTCTAGACGCCCAG
AGCGTGGAAGAGGAGTCGCTCCGAGGGAACCCTCGCGGTTGGCAGAGGGG
CGGCGGGGGCGCCGCAGAGCGCAGCAGGGGCATGACCGAGAACATGGACA
TCAGCTCTCCGGGGCTCGGCGGTGACGAGCTCGGAGGGGGCCACGCCCCG
GGCAGGGGCGCTGCCCCCAGCGAGGGAAGCGCAGCGGCGGTGCCGTCGTA
CTTGTCGAAGAGCCGTCCGTTGCTGCCACCGTGTAGTTCGTCGCTGACGG
TGACTGCGGCGGGGCTCGGAGGCGTTCTAGTCGGACCGGGCGACGAGTGT
TTCGCGGGGGACAGCAGCAGGGGCAACCGCAGGGACCGCAACTGTGAGGT
CGGCCGGGGCGTGCGACGTCCAAGCTACTTGCATAGGGAAGAGGTCGGCT
CTGACGGTGACAGGGCCGCGAGGTTCGGCAATGCTGGTGGCGGCGGCGGC
GGCAACAGCAGCGGCCGGGGCAACGCTACCGGGGGCGGAGGCGACAGGTT
CAAGAGCGCTAAGACCGAAGAGCGGAAACCCGCGTCGGTACCGCCCTCTC
TGGTGCCCCTTGCCAAGCGCGGAGAGGACCTAGAAGCCGCTGGAGCTGGA
GCTAGCTCGAACACGTGTCCTGACGCGGGGAACTTGGGGTGCGGCTCTGG
CCGTGTACGCCCGCGGGGAGGGGGCACAGGGCTCGGGCAGGCTGCGGCCT
CCGTGACCGCCGGTCTTCTCGAGCCGCGGCAGGGGAGCGGCGTGTCCACC
TCCTCCTCTCGCGGCGGGGGTGGTAGTGGCGACGGGGGCAAGGCAGCCAA
GTTCCACACGAGGTTTCCCGCCGCAGGAGGCGGACGAGAAGGAGGAGGAA
GAGGAGCAGGGCAGGCAGAGGCAGGGGTCGGCAAGGTGAAAAGAACGGGA
GCGCAACTCGACTTCCACGGGAACGTAAGGATGGACGTGCCGTTTTTGAT
GGACGGCGCTTTCCTGGAGAAGGGCGACACGGGAGACGCGGCCCTGAGCG
TGGACAGCGGCCAGGCAGAGCTACGCAGCATCCTGCTCGGGACGTTGGAC
GCGGAGGACGAGGAGGACGCGTCGCCCGATGCGAAGCTTAAAGCCGCCAC
CAAGAGCTTCGCCTCTCGAACCTACAGAGGCGGGAGAACGCTGGTTGGCC
TGGACACCTCCGCCTCCAACGCCAACGCCAACGAGACTGCACGACCGCCG
ACTGGCATCAGCTCCAGCAGCACCAGCAGCACCAGCTGTTGCAGCAGCAC
CAGCATGGGGCCCGGGCGGCTTTTTCCGGCGTCAACGGGAACGGGAACGG
GAACGGGAACAGGAAGAGGAACAGGAACAGGAACGAACGGGCCGTTCGAG
AGCGTGATCGCCGGCGGGGGTGGTGGAACGGGCTTGTCAGGCGAGACCTA
CGCGGATTTCGGTCTCGACAACCTGCCCGAGCTCACCAGCAACGACTTCA
CGGGCCTCGCCGCGTTCGACACCGGCGGCGCTCACCTGGCCAGAGAGGCC
CACCAACAGCACAACACATTGCCTCGACAGCCCGACTCGCCAAACTTCGC
CGCCGCCACCTCTGGGTCCTATGCGCCGAGCTTCGTGAACGTCCGGCTCG
GGGGCGGCGGGTCGCTGCCTCCGATGGAGTCCTCGAGCGGGGTGAGCGAC
GACGTTTCGTCGGAGGCGTTTTCTTCTTCCGACGGGTCGTCCTCGGTGTC
CGTCGCGGCTGCGGGGGGGGAGGGGTCGGCGGGGGGAGCGAGCAGCGACA
CGCTCGTGGCGGCCAAGATGCCAGCCGAGGAGGCCTGGTGGGACATCCTC
GAGGGGGAGGAGTTCGTGGCCATGCCGGAGCCGGTCTGGGGAGTGGCTCT
AGACGCCCAGAGCGTGGAAGAGGAGTCGCTCCGAGGGAACCCTCGCGGTT
GGCAGAGGGGCGGCGGGGGCGCCGCAGAGCGCAGCAGGGGCATGACCGAG
AACATGGACATCAGCTCTCCGGGGCTCGGCGGTGACGAGCTCGGAGGGGG
CCACGCCCCGGGCAGGGGCGCTGCCCCCAGCGAGGGAAGCGCAGCGGCGG
TGCCGTCGTACTTGTCGAAGAGCCGTCCGTTGCTGCCACCGTGTAGTTCG
TCGCTGACGGTGACTGCGGCGGGGCTCGGAGGCGTTCTAGTCGGACCGGG
CGACGAGTGTTTCGCGGGGGACAGCAGCAGGGGCAACCGCAGGGACCGCA
ACTGTGAGGTCGGCCGGGGC back to top
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