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Homology
BLAST of mRNA_H-canaliculatus_F_contig10164.191.1 vs. uniprot
Match: A0A6H5L840_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L840_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.400e-27 Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 1 LPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFGGRPGAADALPWIRSHHGDKV-----------NGNNLHDVSLVHWLHGIRDDAATGAYRVSFGKAHTL 318
L GLPLE+L+ ILV F PRD+A + A SRGLRSLR+G V+ +L+ LF GRPGA +A+PWIRSHHG K NG + DVSLV WL G+RD +ATGAYR S G+ H+L
Sbjct: 7 LSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGRPGAGNAIPWIRSHHGGKDKXXXXXNKLKGNGGSHDDVSLVDWLCGLRDMSATGAYRASLGETHSL 123
BLAST of mRNA_H-canaliculatus_F_contig10164.191.1 vs. uniprot
Match: D8LDL9_ECTSI (Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.590e-26 Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 1 LPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFGGRPGAADALPWIRSHHGDKV-------------NGNNLHDVSLVHWLHGIRDDAATGAYRVSFGKAHTL 318
L GLPLE+L+ ILV F PRD+A + A SRGLRSLR+G V+ +L+ LF G+PGA +A+PWIRSHHG K NG ++ DVS+V WL G+RD +ATGAY S G+ H+L
Sbjct: 5 LSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAIPWIRSHHGGKDXXXXXXXXNKLKGNGGSVDDVSVVDWLCGLRDTSATGAYSASLGETHSL 123
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 122.9 |
| Seed ortholog evalue | 1.3e-25 |
| Seed eggNOG ortholog | 2880.D8LDL9 |
| EggNOG free text desc. | guanyl-nucleotide exchange factor activity |
| EggNOG OGs | COG5184@1,KOG1426@2759 |
| COG Functional cat. | DZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Regulator of chromosome condensation, RCC1 |
| Ec32 ortholog | Ec-15_000090.1 |
| Exons | 2 |
| Model size | 1520 |
| Cds size | 456 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928645.9593625-CDS-H-canaliculatus_F_contig10164:1670..1762 | 1622928645.9593625-CDS-H-canaliculatus_F_contig10164:1670..1762 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10164 1671..1762 + |
| 1696845511.3468275-CDS-H-canaliculatus_F_contig10164:1670..1762 | 1696845511.3468275-CDS-H-canaliculatus_F_contig10164:1670..1762 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10164 1671..1762 + |
| 1622928645.9730694-CDS-H-canaliculatus_F_contig10164:2137..2501 | 1622928645.9730694-CDS-H-canaliculatus_F_contig10164:2137..2501 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10164 2138..2501 + |
| 1696845511.3588285-CDS-H-canaliculatus_F_contig10164:2137..2501 | 1696845511.3588285-CDS-H-canaliculatus_F_contig10164:2137..2501 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10164 2138..2501 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928645.9838703-UTR-H-canaliculatus_F_contig10164:2501..3563 | 1622928645.9838703-UTR-H-canaliculatus_F_contig10164:2501..3563 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10164 2502..3563 + |
| 1696845511.3673031-UTR-H-canaliculatus_F_contig10164:2501..3563 | 1696845511.3673031-UTR-H-canaliculatus_F_contig10164:2501..3563 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10164 2502..3563 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10164.191.1 >prot_H-canaliculatus_F_contig10164.191.1 ID=prot_H-canaliculatus_F_contig10164.191.1|Name=mRNA_H-canaliculatus_F_contig10164.191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
LPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFG
GRPGAADALPWIRSHHGDKVNGNNLHDVSLVHWLHGIRDDAATGAYRVSF
GKAHTLGRRRVEAREVEEQNGTGVKKTSQQDRRSSQMRHCPSQGAFVNSI
Q* back to topmRNA from alignment at H-canaliculatus_F_contig10164:1671..3563+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10164.191.1 ID=mRNA_H-canaliculatus_F_contig10164.191.1|Name=mRNA_H-canaliculatus_F_contig10164.191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10164:1671..3563+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCCGGCCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGACTTT
CTGCGGCCCGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGGTGCGTGT
ATTAAATCTCCTGCGTAGCGGTTGTGGTCCACCTGAGTTCAACCAACAAG
CGATAGCGCCGTTCGTCTTATGTTCTTGCTCGATGGAGTTGGACTTCCAG
GGGTTGGTGCACCACAGGTTTGCGAAGGTTGTTCAGCTGGGCGTGAGCGT
TGATGGATTTTTGCCAGGTTTCCTGCCGACCGCTTTAGGTTTTCGATTCA
CGCGGCGTTTGGTGTCAAGTGCAGGACGTCGGACGTCGATTTTGTGTTCC
GATGCCGCGGTAGCGTAAGCGCGTGGCCTTCATTACGCGCACGCCATGCT
CTCGCACACACCCATAAACACGAATCCCCGGGCCATGTTTGCACCGCTAC
CATATGTACAACGACAGCGGTCTCCGGTCTCTTCGTCAAGGGTGCGTCAC
TAGTCTTCTGGAAAAGCTGTTCGGCGGAAGACCCGGGGCAGCTGATGCCC
TCCCATGGATCCGCTCGCACCACGGCGACAAGGTCAACGGCAACAATCTG
CATGACGTCAGCCTGGTGCATTGGTTGCACGGCATAAGGGACGACGCGGC
GACGGGGGCCTACCGCGTCTCGTTTGGAAAGGCCCACACCCTCGGTAGGA
GGAGAGTAGAGGCAAGGGAGGTGGAGGAACAGAATGGGACAGGAGTTAAA
AAAACAAGTCAACAAGACCGAAGGAGTTCCCAGATGAGACACTGTCCATC
TCAAGGGGCTTTTGTCAATTCCATTCAGTGAGGGGTCCATTCGAGTGACA
GGATGAAATTGTGTATCAGTAGGCAAGTGGTGGACAACTGCGCGAAAAAC
ATGGGATGGGGGATGGATAAAAACAGAGAGGTGGTTTTTAAGAGATGGAT
GGGATGTGGAAGAGAACAACAACGTATGCACCGCGAGATCTTTGATACCT
CCTGCCTGTGATGATTCGCCGTGTGAGAGAATTCGCTGCCCGGGAGCTTG
GTGATCCATCGATTGATCCATCGGTCGAACCCTTGATGTCTGGTCACATG
TCTAATCCTTCATTGTCTTCCAGCAGTGGACCGAAATTACTCGAATTTTA
CACACCTGAGAACACGCATACCGTTTGAGCTCGTCAGGGACACCGTGGTG
GGATAAGTCGCCGTCCCATATCTCGGTGCTGCTGCACCTGACAGTTCCTT
TCCGCTACGACCGTTTTGTCCACGCACCCCGTCGTCGGCTTTTGATTACG
GGGCCGTCGTTGTCCACGAAGCTCAGCCGCCAAGGAGCGTGGAAGGGTAG
AGTGCCACAGGGGTGGCCACTGGGTGTGTGGCGTTCACTGGAGCTGTTTG
ACTTGTTTCGACGAGGCTTCGAAGAGCCGAACTGCTTTCGCATCTTTGGG
CGTGTTTCGTCTCCAAGCGTGTGCTGCTTCCGGGGGTTCGAGCGAAAAGC
CTACGCATGAAAACCTCAATCATGAGATGGCAAAGGGACGGGCACAGCAC
GTTGCAACGATAGCATGCAGCATGCATGGCGATGTCAGTGGCACATCCAT
GGGAATAGTACCCTTCATGACGATGGCGACGGCGATCGTCATGACCCCAC
ACTTACCGCAGGGACGGAGCCGCTCGTCGGGCAGGATCGCGGGCGCAGAC
CACATTTCAGCGTCGCACCACCGAGTATGCCTCTGCCAAGGCCCGAACTA
AAAATGTACCCCAACGCGAAACAACCGATGTTTATTGCATTTTCCAGTCG
TGCTCGCTCGCGGTGCCTCTGTCGATGACGATGGAGCTTTTTATGCCCTA
TCCTACATTTAACGACGTAGGTGGTTCTGCCCGCACTTTCGCT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10164:1671..3563+ >mRNA_H-canaliculatus_F_contig10164.191.1 ID=mRNA_H-canaliculatus_F_contig10164.191.1|Name=mRNA_H-canaliculatus_F_contig10164.191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10164:1671..3563+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCCGGCCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGACTTT
CTGCGGCCCGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGCTCCCCGG
CCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGACTTTCTGCGGCC
CGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGCGGTCTCCGGTCTCTT
CGTCAAGGGTGCGTCACTAGTCTTCTGGAAAAGCTGTTCGGCGGAAGACC
CGGGGCAGCTGATGCCCTCCCATGGATCCGCTCGCACCACGGCGACAAGG
TCAACGGCAACAATCTGCATGACGTCAGCCTGGTGCATTGGTTGCACGGC
ATAAGGGACGACGCGGCGACGGGGGCCTACCGCGTCTCGTTTGGAAAGGC
CCACACCCTCGGTAGGAGGAGAGTAGAGGCAAGGGAGGTGGAGGAACAGA
ATGGGACAGGAGTTAAAAAAACAAGTCAACAAGACCGAAGGAGTTCCCAG
ATGAGACACTGTCCATCTCAAGGGGCTTTTGTCAATTCCATTCAGTGACG
GTCTCCGGTCTCTTCGTCAAGGGTGCGTCACTAGTCTTCTGGAAAAGCTG
TTCGGCGGAAGACCCGGGGCAGCTGATGCCCTCCCATGGATCCGCTCGCA
CCACGGCGACAAGGTCAACGGCAACAATCTGCATGACGTCAGCCTGGTGC
ATTGGTTGCACGGCATAAGGGACGACGCGGCGACGGGGGCCTACCGCGTC
TCGTTTGGAAAGGCCCACACCCTCGGTAGGAGGAGAGTAGAGGCAAGGGA
GGTGGAGGAACAGAATGGGACAGGAGTTAAAAAAACAAGTCAACAAGACC
GAAGGAGTTCCCAGATGAGACACTGTCCATCTCAAGGGGCTTTTGTCAAT
TCCATTCAGTGA back to top
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