mRNA_H-canaliculatus_F_contig1015.168.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI) HSP 1 Score: 283 bits (725), Expect = 1.380e-89 Identity = 138/159 (86.79%), Postives = 150/159 (94.34%), Query Frame = 2 Query: 239 PLALSS-KTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFGKY 712 PL L++ +TSLYRRRVAELKHGRVCMLATVGVLVQSFV FPDP+RSAFSNTRP+GAL QVW ERPVIL IVA+MGLIELT+GREDYGSSEAEPGKLG+FWQ ARPEDPQ+WRRRQLQELKHGRLASLGITG+LAQELVTHEGPVEQLL+GDINPF +Y Sbjct: 14 PLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 172
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE) HSP 1 Score: 282 bits (722), Expect = 2.540e-88 Identity = 138/159 (86.79%), Postives = 149/159 (93.71%), Query Frame = 2 Query: 239 PLALSS-KTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFGKY 712 PL L++ +TSLYRRRVAELKHGRVCMLATVGVLVQSFV FPDP+RSAFSNTRP+GAL QVW ERPVIL IVA+MGLIELT+GREDYGSSEAEPGKLGE WQ ARPEDPQ+WRRRQLQELKHGRLASLGITG+LAQELVTHEGPVEQLL+GDINPF +Y Sbjct: 69 PLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPFHEY 227
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH) HSP 1 Score: 159 bits (402), Expect = 1.730e-42 Identity = 80/147 (54.42%), Postives = 106/147 (72.11%), Query Frame = 2 Query: 239 PLALSS-KTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQ 676 PL S + SL+RRRV ELKHGR+CMLAT+GV VQ+ +H PDP FSN RPIGALLQV+ ERP+ ++ I+ +G IEL++G++DY + PG LG F A+P DP W + QL+ELK+GRLA + I G+L QE +T +GP+EQ Sbjct: 3 PLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPDP---VFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKA--PGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA) HSP 1 Score: 161 bits (407), Expect = 2.750e-42 Identity = 85/157 (54.14%), Postives = 108/157 (68.79%), Query Frame = 2 Query: 239 PLALSS-KTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 706 PL S + SL+RRR ELKHGR+CMLAT GVLVQ++VH PD + FSN RPIGALLQV ++RPV I+ +GL+ELT G +DY + PG LG F +P+D QL+ELK+GRLA +GI G+L QE +T +GP+EQLL G +PFG Sbjct: 59 PLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVHLPD---AVFSNPRPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKA--PGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFG 210
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.080e-36 Identity = 85/159 (53.46%), Postives = 104/159 (65.41%), Query Frame = 2 Query: 239 PLALSS-KTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSN-TRPIGAL--LQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPF 703 PL S + SL+RRR ELKHGRV MLA G+LVQSFVHFP SN RP+ L L E V+LF + G++ELT+G++DY + PG+LGEF A+P D + W + Q+ ELKHGRLA LG+ G L QELVT EGPVEQLL G+I PF Sbjct: 79 PLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGT--GVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 233
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA) HSP 1 Score: 143 bits (360), Expect = 5.350e-36 Identity = 76/157 (48.41%), Postives = 100/157 (63.69%), Query Frame = 2 Query: 239 PLALSSKT-SLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 706 PL LS +L++ R ELKHGRV MLAT+GVLVQSF H PDP FSN RP+ AL Q+ ERPV + I +G EL++G++DY + PG + F +P D W + QL+ELK+GRLA + G+ QE +T +GP+EQL G I+PFG Sbjct: 31 PLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDP---VFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKA--PGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFG 182
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.420e-34 Identity = 77/157 (49.04%), Postives = 100/157 (63.69%), Query Frame = 2 Query: 239 PLALSS-KTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 706 PL S + SLY+ R ELKHGRV MLA +G LVQS+ H PD FSN RP+GAL Q+ ERP+ + IV + LIE+T G++D E PG+LG F + +PE QL+ELK+GRLA + I G QEL+T +GP+EQ+ G I+PFG Sbjct: 19 PLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPD---DVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD---PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFG 169
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A0G4FFG9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG9_VITBC) HSP 1 Score: 133 bits (334), Expect = 4.880e-32 Identity = 72/157 (45.86%), Postives = 101/157 (64.33%), Query Frame = 2 Query: 239 PLALS-SKTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 706 PL LS ++ +L R AELKHGRVCM+A +GV+VQ++ PDP F+N RP+ A++QVW++RP + I+ +G EL R+ S E PG L F RP D + Q +ELK+GRLA +GI+G+L QE +T +GP+EQ+ G I+PFG Sbjct: 59 PLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDP---VFNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQ---SPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPFG 209
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC) HSP 1 Score: 127 bits (320), Expect = 4.080e-30 Identity = 76/157 (48.41%), Postives = 98/157 (62.42%), Query Frame = 2 Query: 239 PLALSS-KTSLYRRRVAELKHGRVCMLATVGVLVQSF-VHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPF 703 PL S + SL+RRR ELKHGR+ MLA +G VQS VH PDP FS RP+ AL +V ERP IVA + IEL GR+DY + PG LG F + DP+ +R+ QL+ELK+GRLA +GI G++ QE +T + EQ+ G+INPF Sbjct: 62 PLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDP---VFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKA--PGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Match: W7TEK9_9STRA (Fucoxanthin chlorophyll a c binding protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK9_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.020e-26 Identity = 79/172 (45.93%), Postives = 100/172 (58.14%), Query Frame = 2 Query: 206 VVCAFVSTPE-PPLALSS---KTSLYRRRVAELKHGRVCMLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAI-VAVMGLIELTVGREDYGSSEAEPGKLGEFWQVARPEDPQVWRRRQLQELKHGRLASLGITGILAQELVTHEGPVEQLLRGDINPFG 706 +V + V PE PL L+ + +L R AELKHGRVCMLA+VG LVQ H PD F ++PI ALL+V ERP+ I +A+ L L + Y + PG L +PEDP+ QL+ELK+GRLA L G+ AQE VT +GPVEQLL G I+PFG Sbjct: 56 IVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPD---GPFEASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKYTA----PGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFG 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1015.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1015.168.1 >prot_H-canaliculatus_F_contig1015.168.1 ID=prot_H-canaliculatus_F_contig1015.168.1|Name=mRNA_H-canaliculatus_F_contig1015.168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp MLATVGVLVQSFVHFPDPERSAFSNTRPIGALLQVWEERPVILFAIVAVMback to top mRNA from alignment at H-canaliculatus_F_contig1015:3447..6284+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1015.168.1 ID=mRNA_H-canaliculatus_F_contig1015.168.1|Name=mRNA_H-canaliculatus_F_contig1015.168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2838bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1015:3447..6284+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1015:3447..6284+ >mRNA_H-canaliculatus_F_contig1015.168.1 ID=mRNA_H-canaliculatus_F_contig1015.168.1|Name=mRNA_H-canaliculatus_F_contig1015.168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1015:3447..6284+ (Hapterophycus canaliculatus Oshoro5f female)back to top |