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Homology
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE) HSP 1 Score: 342 bits (876), Expect = 1.550e-111 Identity = 180/338 (53.25%), Postives = 227/338 (67.16%), Query Frame = 1 Query: 7 QVLKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIF-RLEMEPAWTEEGSTV-RQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRR--LIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAA-DNGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSACGLHGEAGSRRVWRCTLRSTSTYLLNKYFHRVGRDSI 1005
Q LK+LSD V A G++ GK +RK +TAGPLCR+VLQ+V +++ PA E+G+T RQ RPHG Q+W A L +D Q WQ+ V + LPS ++L+ Y GCGR GEA C +R CS+CWR+R + L+ +V+V NHWGGA EA+AGTG+VRG PV+DA +GWTRS SR +DVEIYLTA +R + G T LG+VA+F EHQGN WRR D+S PEG YT+ +AVSEYVTA N ++ +GL EF+MR L FYP AIR + ++MHACP +G SACGL E S+R WRC L TSTYLLNKYFH GRDSI
Sbjct: 92 QALKSLSDSVTWDACGFENGKEMRKEVTAGPLCREVLQDVFAFLPAMQLSPASVEDGTTTGRQGGRPHGYQQWTADLKG--VDAGIELQTWQEEVFKMLPSPQELDQHYADYFGCGRIDGEAPCNTRTCSYCWRNRTYKDGLVHDSVEVFNHWGGAPGEANAGTGTVRGCPVKDAGRHSGWTRSTASRGSDVEIYLTANDQREGRYGLEQTTLGKVAFFFEHQGNPWRRDDESNVLPEGEYTIWMAVSEYVTAGVGNNLQLHHTTGLAEFKMRHTLTFYPTPAIRRVVHMMHACPTSGESACGLVRE--SKRQWRCNLLGTSTYLLNKYFHSPGRDSI 425
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE) HSP 1 Score: 272 bits (696), Expect = 4.230e-86 Identity = 138/234 (58.97%), Postives = 163/234 (69.66%), Query Frame = 1 Query: 7 QVLKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAADNGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSE-AAPE 705
Q LKAL D V SA G G V K LTAGPLCR+VLQEV KI L+ PA +E+ +T R+ RPHG Q+W+AGL P ++T AWQQA+S+TLPS EQL+ CY+ SLGCGR A EA C+ R CSFCWR+RG+ ++R+TV V NHWG A E SAG G++RG PV+DA W RS SR NDVEIYL A +R RG G T LG+VAYF EHQGNDWRRGD S A PE
Sbjct: 70 QALKALCDGVRWSAKGRVGGVEVTKELTAGPLCREVLQEVFKILPLQTTPAASEDDTTGRRGGRPHGYQQWDAGLVPTRVETGLDAPAWQQAISKTLPSAEQLQKCYDDSLGCGRTAQEAPCSRRTCSFCWRNRGQGIVRQTVVVFNHWGQAPAEVSAGIGTIRGGPVKDAGTPTWVRSAASRGNDVEIYLKAEDQRAGNRGLGRTTLGKVAYFFEHQGNDWRRGDSSSNAIPE 303
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.800e-58 Identity = 122/296 (41.22%), Postives = 160/296 (54.05%), Query Frame = 1 Query: 91 AGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAAD--NGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSACGLHGEAGSRRVWRCTLRSTSTYLLN 972
+G LCRQ L+EV + L + PA ++ P + W+ WQ V TLP+ QLE Y+V LGCGR C C+FCWR L +V NHWG A EASAGTG++RG PV+DAA+ N W TSRANDVE+Y+ +ARR+ +R +T LGR+A F EHQGND R + G +T+ VAV EYVT RKV+ +G D F +R + F+ AS IR + ++MHAC G S+C L G + WRCT ++ YLLN
Sbjct: 287 SGDLCRQTLREVFSV--LPLAPALSD---------TPSAGRPWDRA-------------DWQSVVRGTLPTALQLEALYKVKLGCGREESGPLCNDDVCAFCWRGNS-GLHNGSVTCFNHWGNAPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVELYVDTSARRSGERRQAATTLGRIACFFEHQGNDSRHLVDGKVQEGGEWTIWVAVKEYVTVGMGQGRKVNYPTGCDVFYLRRSVQFFHASGIRSMVHMMHACATTGASSCCLLRGEGKKDEWRCTPTQSAHYLLN 557
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5JWC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC7_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.490e-28 Identity = 97/284 (34.15%), Postives = 134/284 (47.18%), Query Frame = 1 Query: 13 LKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGR--RLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAAD--NGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCI 852
+K+L+D + +A G+ K R+ +TAG LCRQ LQ+V + L + PA S A R GN EW+ L L T +S R L +V NHWG + EASAGTG++RG PV+DAA+ N W TSRANDV +Y+ ARR +R +T LGR+AY EHQGND R + G +T+ VAV EY+TA RKV+ +G D F +R++ + + +RC+
Sbjct: 204 IKSLADGIEWTASGWTGSKWERRTVTAGDLCRQTLQDVFSV--LPLAPAL----SDTLSAGRSWGNVEWDEDL----LGTEASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRADCPGLHNGSVTCFNHWGNSPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVGLYVDTNARRFGEREQAATTLGRIAYCFEHQGNDSRHLVDGKVQEGGEWTIWVAVEEYITAGRGQGRKVNHPTGCDVFYLRSQDVL-GSPRVRCL 476
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-04_002132.1 |
| Exons | 2 |
| Model size | 1165 |
| Cds size | 867 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928643.419918-UTR-H-canaliculatus_F_contig10147:2305..2452 | 1622928643.419918-UTR-H-canaliculatus_F_contig10147:2305..2452 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10147 2306..2452 + |
| 1696845509.8918264-UTR-H-canaliculatus_F_contig10147:2305..2452 | 1696845509.8918264-UTR-H-canaliculatus_F_contig10147:2305..2452 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10147 2306..2452 + |
| 1622928643.4403553-UTR-H-canaliculatus_F_contig10147:3319..3321 | 1622928643.4403553-UTR-H-canaliculatus_F_contig10147:3319..3321 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10147 3320..3321 + |
| 1696845509.9150407-UTR-H-canaliculatus_F_contig10147:3319..3321 | 1696845509.9150407-UTR-H-canaliculatus_F_contig10147:3319..3321 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10147 3320..3321 + |
| 1622928643.4580905-UTR-H-canaliculatus_F_contig10147:3743..3892 | 1622928643.4580905-UTR-H-canaliculatus_F_contig10147:3743..3892 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10147 3744..3892 + |
| 1696845509.9264598-UTR-H-canaliculatus_F_contig10147:3743..3892 | 1696845509.9264598-UTR-H-canaliculatus_F_contig10147:3743..3892 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10147 3744..3892 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928643.4309251-CDS-H-canaliculatus_F_contig10147:2452..3319 | 1622928643.4309251-CDS-H-canaliculatus_F_contig10147:2452..3319 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10147 2453..3319 + |
| 1696845509.9015713-CDS-H-canaliculatus_F_contig10147:2452..3319 | 1696845509.9015713-CDS-H-canaliculatus_F_contig10147:2452..3319 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10147 2453..3319 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10147.166.1 >prot_H-canaliculatus_F_contig10147.166.1 ID=prot_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=289bp
MEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTL
PSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLN
HWGGAAVEASAGTGSVRGSPVRDAADNGWTRSITSRANDVEIYLTAAARR
NEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVT
AATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSAC
GLHGEAGSRRVWRCTLRSTSTYLLNKYFHRVGRDSIAE* back to topmRNA from alignment at H-canaliculatus_F_contig10147:2306..3892+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10147.166.1 ID=mRNA_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1587bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:2306..3892+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGCACAGGTTTTGAAGGCGCTAAGCGATGACGTGATCTAGTCGGCGGT
GGGCTACGACAAGGGGAAAGCGGTCAGAAAGGTGCTAACGGCCGGCCCCC
TCTGCAGGCAAGTCCTACAGGAGGTCGTCAAGATTTTCCGGTTGGAGATG
GAGCCAGCATGGACGGAGGAGGGATCCACAGTTCGCCAAGCAAGACGGCC
GCACGGCAACCAGGAGTGGAACGCTGGCTTATCGCCGCACACCTTGGATA
CTCTCTCAAGCCCCCAAGCATGGCAGCAGGCAGTGTCCAGGACCTTGCCA
TCCGTAGAGCAGCTCGAAGGATGTTATGAAGTGTCGCTCGGCTGCGGAAG
GAGAGCGGGAGAGGCGGCATGCACTAGTCGGGCGTGCTCGTTTTGCTGGC
GGAGTAGGGGACGACGCCTCATCCGTCGAACGGTTAAAGTCTTAAATCAT
TGGGGAGGGGCAGCGGTAGAAGCGAGCGCCGGGACAGGAAGCGTCCGAGG
TAGCCCGGTGAGGGACGCGGCTGATAATGGCTGGACGCGGTCGATAACAT
CTCGGGCCAATGATGTCGAGATATACCTCACGGCCGCGGCACGACGCAAC
GAGAAGCGTGGCTATGGATCTACAATGCTGGGCAGAGTGGCATACTTCTG
TGAGCATCAAGGAAACGACTGGCGTCGTGGAGATAAGAGTGAAGCTGCGC
CGGAAGGGGCTTACACGGTGAGGGTGGCGGTGTCGGAGTACGTCACAGCT
GCAACCAGAAACAGACGGAAGGTCGATCCGGTTTCCGGCCTCGACGAATT
CCGAATGCGGGCGAGGCTAATGTTCTACCCCGCTTCGGCCATCCGGTGTA
TAGAGAACATTATGCATGCCTGTCCGGTCGCTGGGCATTCCGCATGCGGA
TTGCACGGCGAGGCGGGTTCCAGACGGGTGTGGCGGTGCACCCTTCGGAG
CACCTCAACGTACCTCCTGAACAAGTACTTCCATCGCGTCGGGCGCGACT
CCATCGCCGAATGATTGTGAGTGGCCTTCGTGTCCATCTAAGATCGAAGC
CCCACTCGTCCGGATTGTGCTAGAGTCCCGCAGAACGAACGACCTCACTC
TTGCCCTACAATCCGATTTTCAAGGTTCGACCGTCTCCGCCACCAGCATG
TTCGCAACCCCGGGCGATAAACCCGCTGCAGATAGGCTAGGGGGAGAAAT
ATTGATAAGATTTATTTAGAAATCATGCCTCGGGCGCATTGCTTCTCTCT
ACATCCACCGAACATCCGCCCCCCCCTGAACGCCAAGCCTAGATGAGGCG
GCTCGCGAAATAGTTTCAGGAGGTGCTCCTTCGGTGCTATCATGTCTTTC
TGACAAACTAGTGTTGCCCCTTGGTCCTGTGCCGACAACATCCAAATTTC
TCCCTCTCCCCTTTCTGACCCCCCCCATCGCCTCGCAGGCTCCGAATGAC
TCGCAGGATTTGCATGGCGTGCAAGTTTCCGAAGCTGTTCCCCGGAGGAG
AGGCAGGAGTGGCACGCATCTGCTATCGAGGTGTTGTCGGCAGCCCTTGC
CTTTTTGCGATCACCTATCTTTATCGAGAGGGCGTCT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10147:2306..3892+ >mRNA_H-canaliculatus_F_contig10147.166.1 ID=mRNA_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1734bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:2306..3892+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCCAGCATGGACGGAGGAGGGATCCACAGTTCGCCAAGCAAGACG
GCCGCACGGCAACCAGGAGTGGAACGCTGGCTTATCGCCGCACACCTTGG
ATACTCTCTCAAGCCCCCAAGCATGGCAGCAGGCAGTGTCCAGGACCTTG
CCATCCGTAGAGCAGCTCGAAGGATGTTATGAAGTGTCGCTCGGCTGCGG
AAGGAGAGCGGGAGAGGCGGCATGCACTAGTCGGGCGTGCTCGTTTTGCT
GGCGGAGTAGGGGACGACGCCTCATCCGTCGAACGGTTAAAGTCTTAAAT
CATTGGGGAGGGGCAGCGGTAGAAGCGAGCGCCGGGACAGGAAGCGTCCG
AGGTAGCCCGGTGAGGGACGCGGCTGATAATGGCTGGACGCGGTCGATAA
CATCTCGGGCCAATGATGTCGAGATATACCTCACGGCCGCGGCACGACGC
AACGAGAAGCGTGGCTATGGATCTACAATGCTGGGCAGAGTGGCATACTT
CTGTGAGCATCAAGGAAACGACTGGCGTCGTGGAGATAAGAGTGAAGCTG
CGCCGGAAGGGGCTTACACGGTGAGGGTGGCGGTGTCGGAGTACGTCACA
GCTGCAACCAGAAACAGACGGAAGGTCGATCCGGTTTCCGGCCTCGACGA
ATTCCGAATGCGGGCGAGGCTAATGTTCTACCCCGCTTCGGCCATCCGGT
GTATAGAGAACATTATGCATGCCTGTCCGGTCGCTGGGCATTCCGCATGC
GGATTGCACGGCGAGGCGGGTTCCAGACGGGTGTGGCGGTGCACCCTTCG
GAGCACCTCAACGTACCTCCTGAACAAGTACTTCCATCGCGTCGGGCGCG
ACTCCATCGCCGAATGAATGGAGCCAGCATGGACGGAGGAGGGATCCACA
GTTCGCCAAGCAAGACGGCCGCACGGCAACCAGGAGTGGAACGCTGGCTT
ATCGCCGCACACCTTGGATACTCTCTCAAGCCCCCAAGCATGGCAGCAGG
CAGTGTCCAGGACCTTGCCATCCGTAGAGCAGCTCGAAGGATGTTATGAA
GTGTCGCTCGGCTGCGGAAGGAGAGCGGGAGAGGCGGCATGCACTAGTCG
GGCGTGCTCGTTTTGCTGGCGGAGTAGGGGACGACGCCTCATCCGTCGAA
CGGTTAAAGTCTTAAATCATTGGGGAGGGGCAGCGGTAGAAGCGAGCGCC
GGGACAGGAAGCGTCCGAGGTAGCCCGGTGAGGGACGCGGCTGATAATGG
CTGGACGCGGTCGATAACATCTCGGGCCAATGATGTCGAGATATACCTCA
CGGCCGCGGCACGACGCAACGAGAAGCGTGGCTATGGATCTACAATGCTG
GGCAGAGTGGCATACTTCTGTGAGCATCAAGGAAACGACTGGCGTCGTGG
AGATAAGAGTGAAGCTGCGCCGGAAGGGGCTTACACGGTGAGGGTGGCGG
TGTCGGAGTACGTCACAGCTGCAACCAGAAACAGACGGAAGGTCGATCCG
GTTTCCGGCCTCGACGAATTCCGAATGCGGGCGAGGCTAATGTTCTACCC
CGCTTCGGCCATCCGGTGTATAGAGAACATTATGCATGCCTGTCCGGTCG
CTGGGCATTCCGCATGCGGATTGCACGGCGAGGCGGGTTCCAGACGGGTG
TGGCGGTGCACCCTTCGGAGCACCTCAACGTACCTCCTGAACAAGTACTT
CCATCGCGTCGGGCGCGACTCCATCGCCGAATGA back to top
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