mRNA_H-canaliculatus_F_contig10147.166.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE) HSP 1 Score: 342 bits (876), Expect = 1.550e-111 Identity = 180/338 (53.25%), Postives = 227/338 (67.16%), Query Frame = 1 Query: 7 QVLKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIF-RLEMEPAWTEEGSTV-RQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRR--LIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAA-DNGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSACGLHGEAGSRRVWRCTLRSTSTYLLNKYFHRVGRDSI 1005
Q LK+LSD V A G++ GK +RK +TAGPLCR+VLQ+V +++ PA E+G+T RQ RPHG Q+W A L +D Q WQ+ V + LPS ++L+ Y GCGR GEA C +R CS+CWR+R + L+ +V+V NHWGGA EA+AGTG+VRG PV+DA +GWTRS SR +DVEIYLTA +R + G T LG+VA+F EHQGN WRR D+S PEG YT+ +AVSEYVTA N ++ +GL EF+MR L FYP AIR + ++MHACP +G SACGL E S+R WRC L TSTYLLNKYFH GRDSI
Sbjct: 92 QALKSLSDSVTWDACGFENGKEMRKEVTAGPLCREVLQDVFAFLPAMQLSPASVEDGTTTGRQGGRPHGYQQWTADLKG--VDAGIELQTWQEEVFKMLPSPQELDQHYADYFGCGRIDGEAPCNTRTCSYCWRNRTYKDGLVHDSVEVFNHWGGAPGEANAGTGTVRGCPVKDAGRHSGWTRSTASRGSDVEIYLTANDQREGRYGLEQTTLGKVAFFFEHQGNPWRRDDESNVLPEGEYTIWMAVSEYVTAGVGNNLQLHHTTGLAEFKMRHTLTFYPTPAIRRVVHMMHACPTSGESACGLVRE--SKRQWRCNLLGTSTYLLNKYFHSPGRDSI 425
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE) HSP 1 Score: 272 bits (696), Expect = 4.230e-86 Identity = 138/234 (58.97%), Postives = 163/234 (69.66%), Query Frame = 1 Query: 7 QVLKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAADNGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSE-AAPE 705
Q LKAL D V SA G G V K LTAGPLCR+VLQEV KI L+ PA +E+ +T R+ RPHG Q+W+AGL P ++T AWQQA+S+TLPS EQL+ CY+ SLGCGR A EA C+ R CSFCWR+RG+ ++R+TV V NHWG A E SAG G++RG PV+DA W RS SR NDVEIYL A +R RG G T LG+VAYF EHQGNDWRRGD S A PE
Sbjct: 70 QALKALCDGVRWSAKGRVGGVEVTKELTAGPLCREVLQEVFKILPLQTTPAASEDDTTGRRGGRPHGYQQWDAGLVPTRVETGLDAPAWQQAISKTLPSAEQLQKCYDDSLGCGRTAQEAPCSRRTCSFCWRNRGQGIVRQTVVVFNHWGQAPAEVSAGIGTIRGGPVKDAGTPTWVRSAASRGNDVEIYLKAEDQRAGNRGLGRTTLGKVAYFFEHQGNDWRRGDSSSNAIPE 303
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.800e-58 Identity = 122/296 (41.22%), Postives = 160/296 (54.05%), Query Frame = 1 Query: 91 AGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGRRLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAAD--NGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCIENIMHACPVAGHSACGLHGEAGSRRVWRCTLRSTSTYLLN 972
+G LCRQ L+EV + L + PA ++ P + W+ WQ V TLP+ QLE Y+V LGCGR C C+FCWR L +V NHWG A EASAGTG++RG PV+DAA+ N W TSRANDVE+Y+ +ARR+ +R +T LGR+A F EHQGND R + G +T+ VAV EYVT RKV+ +G D F +R + F+ AS IR + ++MHAC G S+C L G + WRCT ++ YLLN
Sbjct: 287 SGDLCRQTLREVFSV--LPLAPALSD---------TPSAGRPWDRA-------------DWQSVVRGTLPTALQLEALYKVKLGCGREESGPLCNDDVCAFCWRGNS-GLHNGSVTCFNHWGNAPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVELYVDTSARRSGERRQAATTLGRIACFFEHQGNDSRHLVDGKVQEGGEWTIWVAVKEYVTVGMGQGRKVNYPTGCDVFYLRRSVQFFHASGIRSMVHMMHACATTGASSCCLLRGEGKKDEWRCTPTQSAHYLLN 557
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Match: A0A6H5JWC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC7_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.490e-28 Identity = 97/284 (34.15%), Postives = 134/284 (47.18%), Query Frame = 1 Query: 13 LKALSDDVI*SAVGYDKGKAVRKVLTAGPLCRQVLQEVVKIFRLEMEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLPSVEQLEGCYEVSLGCGRRAGEAACTSRACSFCWRSRGR--RLIRRTVKVLNHWGGAAVEASAGTGSVRGSPVRDAAD--NGWTRSITSRANDVEIYLTAAARRNEKRGYGSTMLGRVAYFCEHQGNDWRRGDKSEAAPEGAYTVRVAVSEYVTAATRNRRKVDPVSGLDEFRMRARLMFYPASAIRCI 852
+K+L+D + +A G+ K R+ +TAG LCRQ LQ+V + L + PA S A R GN EW+ L L T +S R L +V NHWG + EASAGTG++RG PV+DAA+ N W TSRANDV +Y+ ARR +R +T LGR+AY EHQGND R + G +T+ VAV EY+TA RKV+ +G D F +R++ + + +RC+
Sbjct: 204 IKSLADGIEWTASGWTGSKWERRTVTAGDLCRQTLQDVFSV--LPLAPAL----SDTLSAGRSWGNVEWDEDL----LGTEASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRADCPGLHNGSVTCFNHWGNSPEEASAGTGTLRGGPVKDAAEFGNKWMIQETSRANDVGLYVDTNARRFGEREQAATTLGRIAYCFEHQGNDSRHLVDGKVQEGGEWTIWVAVEEYITAGRGQGRKVNHPTGCDVFYLRSQDVL-GSPRVRCL 476 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10147.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10147.166.1 >prot_H-canaliculatus_F_contig10147.166.1 ID=prot_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=289bp MEPAWTEEGSTVRQARRPHGNQEWNAGLSPHTLDTLSSPQAWQQAVSRTLback to top mRNA from alignment at H-canaliculatus_F_contig10147:2306..3892+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10147.166.1 ID=mRNA_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1587bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:2306..3892+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10147:2306..3892+ >mRNA_H-canaliculatus_F_contig10147.166.1 ID=mRNA_H-canaliculatus_F_contig10147.166.1|Name=mRNA_H-canaliculatus_F_contig10147.166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1734bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:2306..3892+ (Hapterophycus canaliculatus Oshoro5f female)back to top |