Homology
BLAST of mRNA_H-canaliculatus_F_contig10136.162.1 vs. uniprot
Match: D7FIA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA2_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 4.840e-18 Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 Query: 193 EHCNAAVTHVRSQAAAIRKTTSEYLKGELLRGEGLCNGDPKW 318
EHCNAAVTHVRS+AAAIRKTTSEYLKGELLRGE L NGDPKW
Sbjct: 2 EHCNAAVTHVRSKAAAIRKTTSEYLKGELLRGERLTNGDPKW 43
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 508 |
| Cds size | 321 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928643.0507135-UTR-H-canaliculatus_F_contig10136:907..1075 | 1622928643.0507135-UTR-H-canaliculatus_F_contig10136:907..1075 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10136 908..1075 + |
| 1696845509.708083-UTR-H-canaliculatus_F_contig10136:907..1075 | 1696845509.708083-UTR-H-canaliculatus_F_contig10136:907..1075 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10136 908..1075 + |
| 1622928643.0790718-UTR-H-canaliculatus_F_contig10136:1396..1415 | 1622928643.0790718-UTR-H-canaliculatus_F_contig10136:1396..1415 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10136 1397..1415 + |
| 1696845509.7340996-UTR-H-canaliculatus_F_contig10136:1396..1415 | 1696845509.7340996-UTR-H-canaliculatus_F_contig10136:1396..1415 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10136 1397..1415 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928643.0655696-CDS-H-canaliculatus_F_contig10136:1075..1396 | 1622928643.0655696-CDS-H-canaliculatus_F_contig10136:1075..1396 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10136 1076..1396 + |
| 1696845509.721256-CDS-H-canaliculatus_F_contig10136:1075..1396 | 1696845509.721256-CDS-H-canaliculatus_F_contig10136:1075..1396 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10136 1076..1396 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10136.162.1 >prot_H-canaliculatus_F_contig10136.162.1 ID=prot_H-canaliculatus_F_contig10136.162.1|Name=mRNA_H-canaliculatus_F_contig10136.162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MGTFMASSPLWITVAETLAPEQLAFQVLRSCFPDCGGLGPDMGDGCVAVF
LRRHVKMHTFNEHEQVVTFEEHARNCDLTPMSEQTPTLTIGMAPKLAGEF
ATCCLL* back to topmRNA from alignment at H-canaliculatus_F_contig10136:908..1415+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10136.162.1 ID=mRNA_H-canaliculatus_F_contig10136.162.1|Name=mRNA_H-canaliculatus_F_contig10136.162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=508bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10136:908..1415+ (Hapterophycus canaliculatus Oshoro5f female)
GCAATTGTATAGGAAGTGGCCCCATTGCGTCAAGAAATCAGCCACCGAAA
CCTTTGTATATGCTTCAATGAAAGAGCACTCGAGACATCGTGCGTGATGA
TCCCTGTTGGGACGAAATGTCTCAAAAAATAGTCAAGCGGCAGGAGGCGG
CTCGTCTCGTCCTATGAAATGGGAACATTCATGGCGAGCTCACCACTTTG
GATCACCGTTGCAGAGACCCTCGCCCCTGAGCAGCTCGCCTTTCAAGTAC
TCAGAAGTTGTTTTCCGGATTGCGGCGGCTTGGGACCGGACATGGGTGAC
GGCTGCGTTGCAGTGTTCCTGCGGAGACACGTCAAGATGCACACATTCAA
CGAGCACGAACAGGTCGTGACCTTTGAAGAGCACGCGCGCAACTGTGACT
TGACGCCCATGTCTGAACAAACCCCAACTCTTACCATAGGAATGGCGCCG
AAGCTTGCTGGCGAATTTGCAACCTGTTGTCTGTTGTAGCGGGATTACGT
CGCGTGTT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10136:908..1415+ >mRNA_H-canaliculatus_F_contig10136.162.1 ID=mRNA_H-canaliculatus_F_contig10136.162.1|Name=mRNA_H-canaliculatus_F_contig10136.162.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10136:908..1415+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAACATTCATGGCGAGCTCACCACTTTGGATCACCGTTGCAGAGAC
CCTCGCCCCTGAGCAGCTCGCCTTTCAAGTACTCAGAAGTTGTTTTCCGG
ATTGCGGCGGCTTGGGACCGGACATGGGTGACGGCTGCGTTGCAGTGTTC
CTGCGGAGACACGTCAAGATGCACACATTCAACGAGCACGAACAGGTCGT
GACCTTTGAAGAGCACGCGCGCAACTGTGACTTGACGCCCATGTCTGAAC
AAACCCCAACTCTTACCATAGGAATGGCGCCGAAGCTTGCTGGCGAATTT
GCAACCTGTTGTCTGTTGTAGATGGGAACATTCATGGCGAGCTCACCACT
TTGGATCACCGTTGCAGAGACCCTCGCCCCTGAGCAGCTCGCCTTTCAAG
TACTCAGAAGTTGTTTTCCGGATTGCGGCGGCTTGGGACCGGACATGGGT
GACGGCTGCGTTGCAGTGTTCCTGCGGAGACACGTCAAGATGCACACATT
CAACGAGCACGAACAGGTCGTGACCTTTGAAGAGCACGCGCGCAACTGTG
ACTTGACGCCCATGTCTGAACAAACCCCAACTCTTACCATAGGAATGGCG
CCGAAGCTTGCTGGCGAATTTGCAACCTGTTGTCTGTTGTAG back to top
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