mRNA_H-canaliculatus_F_contig10133.158.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI) HSP 1 Score: 426 bits (1094), Expect = 1.000e-138 Identity = 220/261 (84.29%), Postives = 232/261 (88.89%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGG--------KSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAKMEYRENVAETRAA 759 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYN++ ERHLR SAL TLTRPSVLITDAHNALTGG RK RE LISTVMDTVRGGGNVLLPTDTAGRVLELLVLL+D+WQKHRLG+YKLVLLHNTAFNT EFAKSQ LEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELG+DPKVV+ATDMSLD+GFSKALLLRWASGGANTILLTGRGHG+TTAR L+AK EYR++ A RAA Sbjct: 265 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQ-------LEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSEYRKSEAGRRAA 518
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA) HSP 1 Score: 298 bits (763), Expect = 3.560e-91 Identity = 152/239 (63.60%), Postives = 181/239 (75.73%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALT-GGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714 GRGAGVTITPYAAG +IG ++WR+ WQT+DNDIVYA +YNH RE HL A+ TL+RPS++ITDAH LT K + R + L V TVR GGNVLLP DTAGRVLELL+LLD HW +++LG+Y LVLLH+ AFNT EFAKSQ LEWMS+ I + FDLQRSNPFE+R+V + HSLEEL LG P VVLATD+SLD+GF+KALLL WA+ N +LLT RGHG + AR LL Sbjct: 191 GRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVETLSRPSIMITDAHQVLTMQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQ-------LEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELL 422
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO) HSP 1 Score: 232 bits (591), Expect = 4.710e-67 Identity = 120/242 (49.59%), Postives = 161/242 (66.53%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAKME 726 G+G G+TITP+ AG +G WR++ + ED I+YA YNH +ERHL +AL T RP+VLITDA+N LT SRK R+ L++ VM T+R GGNVL+P DTA RVLELL++LD HW+ ++G Y LVLL+N A+N EFAKS LE+M+ DI ++F+ R N F+ +NVH+ HSLEEL+EL + PKVVLA+ SL+ G + LL+ WAS N IL R T + + M+ Sbjct: 150 GKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALHTFNRPAVLITDAYNGLTEQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLYSLVLLNNVAYNVVEFAKSM-------LEFMNSDISKSFEHTRDNVFDCKNVHLCHSLEELEELPDQPKVVLASMASLEAGLGRNLLVDWASDPDNLILFVERAQAGTLSSFIQTYMD 382
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: L8GYA6_ACACA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYA6_ACACA) HSP 1 Score: 231 bits (590), Expect = 1.760e-66 Identity = 120/240 (50.00%), Postives = 159/240 (66.25%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAK 720 GRGAG+ +TPY G MIG VW+++ +TE+ I+YA YNH +ERHL P+ L TL RP++LITDA N L+ SR+ R+ L+ T M T++G GNVLLPTDTAGRVLELL+ D HW +RL Y LVLL A+NT EFAKSQ LEWMS + ++FDL R NPFE + V + HS+EEL+ L P VVLAT SL++GF++ L + W+S + ++ T R T +L + Sbjct: 103 GRGAGIELTPYVGGHMIGGTVWKITKETEE--ILYAVDYNHKKERHLNPTVLETLNRPTLLITDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRLSQYGLVLLEKQAYNTIEFAKSQ-------LEWMSTAVQKSFDLDRVNPFEFKFVRLCHSVEELEALPK-PLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQPGTLGHLVLTQ 332
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A7S0N1Z8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1Z8_9CHLO) HSP 1 Score: 209 bits (532), Expect = 5.920e-61 Identity = 107/235 (45.53%), Postives = 153/235 (65.11%), Query Frame = 1 Query: 10 AGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714 A VT+TPY AG ++G +W++S +TED +VYA +NH +ERHL + L + RPS+LITDA NA +R R+ L TV +RGGG+VL+P DTAGRVLEL++ L+ +W +L +YKLVLL N A+NT EFAKS +EWM++ I FD R+N F+ R++H+ HS+EEL LG PK+V+A+ SL+ G ++ L + WA+ N +L G +T AR ++ Sbjct: 149 AAVTVTPYNAGHLLGGTLWKISKETED--VVYAVDFNHKKERHLNGTVLESFNRPSLLITDAFNAANRPPARAARDKELTDTVAKVLRGGGSVLIPIDTAGRVLELVLHLEQYWTVAKLASYKLVLLTNVAYNTMEFAKSH-------IEWMNDAISTTFDQTRTNAFKTRHLHLCHSVEELAGLGPGPKLVMASMQSLEVGPARELFVTWATNPRNLLLFPDMGQPNTLAREVM 374
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A6B2KYM6_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYM6_9EUKA) HSP 1 Score: 211 bits (536), Expect = 4.940e-59 Identity = 115/238 (48.32%), Postives = 153/238 (64.29%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714 G+G + ITPYAAG +IG +W++ +T++ I+YA YNH +ERHL P+ L TLT+P++LITDA NAL SR R++ LI ++ T+R GGNVLLP DTAGRVLELLV+LD HW H +Y L+ L+N A+NT EFAKSQ LEWMSE I F R N F+ NV + H E++E + PKVVLA+ SL+ GF++ + + W S N I+ T T AR L+ Sbjct: 139 GKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNSQDSRGNRDSLLIESITSTLRAGGNVLLPVDTAGRVLELLVILDQHWS-HFHYSYPLLFLNNVAYNTIEFAKSQ-------LEWMSEAIMNKFISHRENCFQFSNVKLCHKTSEVNEFPS-PKVVLASMSSLNSGFAQDIFVEWCSDAKNRIIFTDTSRPGTIARRLM 365
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A7RPX1_NEMVE (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPX1_NEMVE) HSP 1 Score: 210 bits (535), Expect = 5.800e-59 Identity = 113/253 (44.66%), Postives = 161/253 (63.64%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQK--HRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAKMEYRENVAETR 753 G+G G+TITPYAAG MIG +W++ E+ DI+YA YNH +ERHL + L TL+RPS+LITD+ NAL R+ R+ +L+ ++ T+R GNV++ DTAGRVLEL LLD W+ L Y L +L+N ++N EFAKSQ +EWMS+ I +AF++ R+NP++ R H+ HSL +L + +PKVVLA+ M L GFS+ L + WA NT++ T R T AR L+ +E ++ E + Sbjct: 139 GKGHGITITPYAAGHMIGGTMWKIVKDGEE-DIIYAVDYNHKKERHLNGAVLETLSRPSLLITDSFNALNIQTRRRERDTQLMGEILKTMRRHGNVMIAIDTAGRVLELSQLLDQLWRNLDSGLSAYSLAMLNNVSYNVIEFAKSQ-------VEWMSDKIMKAFEIGRNNPYQFRYCHLCHSLADLARVP-EPKVVLASMMDLTAGFSRDLFVEWADNPKNTVIFTARSSPGTLARTLIDNLELKQVELEVK 382
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A2R6XNT6_MARPO (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XNT6_MARPO) HSP 1 Score: 210 bits (535), Expect = 6.430e-59 Identity = 110/240 (45.83%), Postives = 157/240 (65.42%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAK 720 G+G G+TITPYAAGR++G VW+++ TED I+YA +NH +ERHL + L + RP+VLITD++NAL +K R+A + VM +R GGNVLLP +TAGRVLEL++ LD W +L NY + LL N +++T EFAKS LEWMS+ I ++F+ R N F L+ + + H+ ++LD+L PKVV A+ SL+ GF++ L + WA+ N +L T RG T +R L A+ Sbjct: 156 GKGEGITITPYAAGRLLGGTVWKITVDTED--IIYAVDFNHRKERHLNGTVLQSFVRPAVLITDSYNALNNQPLQKQRDAEFLDVVMKALRAGGNVLLPVETAGRVLELVLYLDKCWAGDKL-NYPMALLTNVSYSTLEFAKSL-------LEWMSDAIAKSFEHTRDNSFVLKYLKLCHTRKDLDDLPAGPKVVFASMASLEAGFARELFVEWATDPNNLVLFTERGQVGTLSRKLQAE 385
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: A0A388KIQ1_CHABU (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KIQ1_CHABU) HSP 1 Score: 207 bits (528), Expect = 4.340e-58 Identity = 110/241 (45.64%), Postives = 155/241 (64.32%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHRLGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDE-LGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLLAK 720 G+G G+TIT YAAG ++G VW+++ TED I+YA Y+H +ERHL + L T RP+VLITDA+NAL+ +K R+ I ++M T+RG G+VL+P +TAGRVLEL++ L+ HW RL Y LV L + +++T + AKS LEWMS+ I + FD R N FE++ +++ HS EE D L P+VVLA+ SL+ GF++ L + WA N +L T RG T AR L A+ Sbjct: 140 GKGEGITITAYAAGHLLGGTVWKITKDTED--IIYAVDYHHRKERHLSGTVLETFVRPAVLITDAYNALSNQAFKKERDHLFIDSIMSTLRGNGSVLIPVETAGRVLELILYLEQHWATERLA-YPLVFLTHVSYHTIDTAKSS-------LEWMSDTISKTFDTSRDNAFEVKYINLKHSREEFDSMLTKGPQVVLASTASLEAGFARDLFVEWAGDPKNLVLFTERGPAGTLARVLQAE 370
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Match: B3S6C6_TRIAD (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Trichoplax TaxID=10227 RepID=B3S6C6_TRIAD) HSP 1 Score: 208 bits (529), Expect = 4.620e-58 Identity = 112/239 (46.86%), Postives = 154/239 (64.44%), Query Frame = 1 Query: 1 GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSALSTLTRPSVLITDAHNALTGGKSRKWREARLISTVMDTVRGGGNVLLPTDTAGRVLELLVLLDDHWQKHR-LGNYKLVLLHNTAFNTSEFAKSQASKQGFRLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGNDPKVVLATDMSLDYGFSKALLLRWASGGANTILLTGRGHGSTTARNLL 714 G+G G+TITPYAAG M+G +W++ E+ DI+YA YNH +ERHL S L TLT PS+LITDA+NA R+ R+ +LIS V++ +R GGNVL+ DTAGRVLEL +LLD W+K L Y + LL++ ++N EFAKSQ +EWM + + AF+ R+NPF+ + + + HSL EL L +PKVVLA+ L GF++ L L+WA N + TGR T R++L Sbjct: 139 GKGNGLTITPYAAGHMVGGTIWKIIKDGEE-DIIYAVDYNHKKERHLNGSVLETLTHPSLLITDAYNAQYNQAKRRDRDQKLISRVLNALRSGGNVLIAVDTAGRVLELSLLLDHLWRKDPGLSAYPIALLNHVSYNVVEFAKSQ-------VEWMCDKVLVAFEDNRNNPFQFKYIQLCHSLNELSGLP-EPKVVLASSPDLTCGFARDLFLQWAGNSKNLTIFTGRSSPGTLGRHIL 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10133.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10133.158.1 >prot_H-canaliculatus_F_contig10133.158.1 ID=prot_H-canaliculatus_F_contig10133.158.1|Name=mRNA_H-canaliculatus_F_contig10133.158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=309bp GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHNRERHLRPSback to top mRNA from alignment at H-canaliculatus_F_contig10133:15..3652- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10133.158.1 ID=mRNA_H-canaliculatus_F_contig10133.158.1|Name=mRNA_H-canaliculatus_F_contig10133.158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10133:15..3652- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10133:15..3652- >mRNA_H-canaliculatus_F_contig10133.158.1 ID=mRNA_H-canaliculatus_F_contig10133.158.1|Name=mRNA_H-canaliculatus_F_contig10133.158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1854bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10133:15..3652- (Hapterophycus canaliculatus Oshoro5f female)back to top |