Homology
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match:
A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)
HSP 1 Score: 176 bits (445), Expect = 9.410e-53
Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 1
Query: 4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
ER ++ RQ RLDKRVSGG+GKLHRCTGA+ NG K T GC V ARACK WKVTEV L+HV CTGQ+ KKQRI RR V+ EAAAL++SN S+T ALA++LK+T VDI ERTA RM + GK I +Y++LQSY +LG+DNGNVV+C+
Sbjct: 43 IERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match:
D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)
HSP 1 Score: 168 bits (426), Expect = 1.850e-50
Identity = 89/157 (56.69%), Postives = 115/157 (73.25%), Query Frame = 1
Query: 16 LVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
++ RQ RLDKRVSGG+GKLHRCTGAI NG K T GC VRAR CKQ WKVTEV L+HV CTGQ+ KKQRI RR V+ EAAAL+++N S+T +L ++LK+T VD+ ER+A+RM + GK I +Y++LQS +LG+DNGN+V+C+
Sbjct: 1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match:
A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)
HSP 1 Score: 176 bits (445), Expect = 7.970e-49
Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 1
Query: 4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
ER ++ RQ RLDKRVSGG+GKLHRCTGA+ NG K T GC V ARACK WKVTEV L+HV CTGQ+ KKQRI RR V+ EAAAL++SN S+T ALA++LK+T VDI ERTA RM + GK I +Y++LQSY +LG+DNGNVV+C+
Sbjct: 43 IERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match:
A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)
HSP 1 Score: 163 bits (413), Expect = 7.130e-47
Identity = 88/155 (56.77%), Postives = 111/155 (71.61%), Query Frame = 1
Query: 4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNG 468
FER ++ RQ RLDKR+ GG+GKLHRCTGAI NG K T GC V AR CKQ WKVTEV L+HV CTGQ+S KKQRI RR V+ EAAAL+++N +T +L ++LK+T VD+ ERTA+RM + GK I +Y++LQSY +LG+DNG
Sbjct: 151 FERCMIAQSRQCRLDKRIIGGRGKLHRCTGAIVNG--KATSGCPVLARGCKQTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match:
A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)
HSP 1 Score: 160 bits (406), Expect = 7.220e-46
Identity = 86/156 (55.13%), Postives = 111/156 (71.15%), Query Frame = 1
Query: 16 LVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDC 483
++ RQ RLDKR SGG+ KLHRCTGAI NG K T GC VRAR CKQ WKVTE L+HV CTGQ+ KKQ I RR V+ +AAAL+++N S+T +L ++LK+T VDI ERTA RM + GK + I +Y++LQ+Y +LG+DNGN+V+C
Sbjct: 1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
The following BLAST results are available for this feature:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10123.152.1
>prot_H-canaliculatus_F_contig10123.152.1 ID=prot_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp
MFERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARA
CKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSM
TALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSI
LGQDNGNVVDCE
back to topmRNA from alignment at H-canaliculatus_F_contig10123:4518..5003-
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10123.152.1 ID=mRNA_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10123:4518..5003- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGAGCGGGTGCTTGTGGGGCATGGACGGCAGTCTCGTTTAGATAA
AAGAGTCAGTGGCGGCAAGGGCAAGCTCCATCGTTGCACTGGAGCAATCT
ACAACGGCACGGAGAAGACGACGCTGGGCTGTCAAGTGCGCGCTCGTGCG
TGCAAGCAGAAAACTAAAGAGTGGAAAGTAACGGAAGTAGAGTTGAATCA
CGTCAACTGCACCGGGCAGTCGTCGGAAAAGAAGCAGCGGATTTGCCGGC
GGTCTGTGCAGGCAGAGGCGGCTGCGCTGATCAACTCCAACGGCTCCATG
ACAGCGCTGGCACTGGCGAGGTCACTGAAGTCCACGCAACATGTTGATAT
CAAGGAGCGCACGGCGAACCGCATGATCCGCGAAGAGCGGGGCAAAGAAG
ATGCGGTAATCAAGGGACAGTACGAAGTACTCCAGAGCTACCTGTCCATC
CTCGGGCAAGACAACGGCAACGTCGTCGATTGTGAA
back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10123:4518..5003-
>mRNA_H-canaliculatus_F_contig10123.152.1 ID=mRNA_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10123:4518..5003- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGAGCGGGTGCTTGTGGGGCATGGACGGCAGTCTCGTTTAGATAA
AAGAGTCAGTGGCGGCAAGGGCAAGCTCCATCGTTGCACTGGAGCAATCT
ACAACGGCACGGAGAAGACGACGCTGGGCTGTCAAGTGCGCGCTCGTGCG
TGCAAGCAGAAAACTAAAGAGTGGAAAGTAACGGAAGTAGAGTTGAATCA
CGTCAACTGCACCGGGCAGTCGTCGGAAAAGAAGCAGCGGATTTGCCGGC
GGTCTGTGCAGGCAGAGGCGGCTGCGCTGATCAACTCCAACGGCTCCATG
ACAGCGCTGGCACTGGCGAGGTCACTGAAGTCCACGCAACATGTTGATAT
CAAGGAGCGCACGGCGAACCGCATGATCCGCGAAGAGCGGGGCAAAGAAG
ATGCGGTAATCAAGGGACAGTACGAAGTACTCCAGAGCTACCTGTCCATC
CTCGGGCAAGACAACGGCAACGTCGTCGATTGTGAAATGTTCGAGCGGGT
GCTTGTGGGGCATGGACGGCAGTCTCGTTTAGATAAAAGAGTCAGTGGCG
GCAAGGGCAAGCTCCATCGTTGCACTGGAGCAATCTACAACGGCACGGAG
AAGACGACGCTGGGCTGTCAAGTGCGCGCTCGTGCGTGCAAGCAGAAAAC
TAAAGAGTGGAAAGTAACGGAAGTAGAGTTGAATCACGTCAACTGCACCG
GGCAGTCGTCGGAAAAGAAGCAGCGGATTTGCCGGCGGTCTGTGCAGGCA
GAGGCGGCTGCGCTGATCAACTCCAACGGCTCCATGACAGCGCTGGCACT
GGCGAGGTCACTGAAGTCCACGCAACATGTTGATATCAAGGAGCGCACGG
CGAACCGCATGATCCGCGAAGAGCGGGGCAAAGAAGATGCGGTAATCAAG
GGACAGTACGAAGTACTCCAGAGCTACCTGTCCATCCTCGGGCAAGACAA
CGGCAACGTCGTCGATTGTGAA
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