mRNA_H-canaliculatus_F_contig10123.152.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE) HSP 1 Score: 176 bits (445), Expect = 9.410e-53 Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 1 Query: 4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
ER ++ RQ RLDKRVSGG+GKLHRCTGA+ NG K T GC V ARACK WKVTEV L+HV CTGQ+ KKQRI RR V+ EAAAL++SN S+T ALA++LK+T VDI ERTA RM + GK I +Y++LQSY +LG+DNGNVV+C+
Sbjct: 43 IERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI) HSP 1 Score: 168 bits (426), Expect = 1.850e-50 Identity = 89/157 (56.69%), Postives = 115/157 (73.25%), Query Frame = 1 Query: 16 LVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
++ RQ RLDKRVSGG+GKLHRCTGAI NG K T GC VRAR CKQ WKVTEV L+HV CTGQ+ KKQRI RR V+ EAAAL+++N S+T +L ++LK+T VD+ ER+A+RM + GK I +Y++LQS +LG+DNGN+V+C+
Sbjct: 1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE) HSP 1 Score: 176 bits (445), Expect = 7.970e-49 Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 1 Query: 4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDCE 486
ER ++ RQ RLDKRVSGG+GKLHRCTGA+ NG K T GC V ARACK WKVTEV L+HV CTGQ+ KKQRI RR V+ EAAAL++SN S+T ALA++LK+T VDI ERTA RM + GK I +Y++LQSY +LG+DNGNVV+C+
Sbjct: 43 IERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE) HSP 1 Score: 163 bits (413), Expect = 7.130e-47 Identity = 88/155 (56.77%), Postives = 111/155 (71.61%), Query Frame = 1 Query: 4 FERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNG 468
FER ++ RQ RLDKR+ GG+GKLHRCTGAI NG K T GC V AR CKQ WKVTEV L+HV CTGQ+S KKQRI RR V+ EAAAL+++N +T +L ++LK+T VD+ ERTA+RM + GK I +Y++LQSY +LG+DNG
Sbjct: 151 FERCMIAQSRQCRLDKRIIGGRGKLHRCTGAIVNG--KATSGCPVLARGCKQTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 7.220e-46 Identity = 86/156 (55.13%), Postives = 111/156 (71.15%), Query Frame = 1 Query: 16 LVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARACKQKTKEWKVTEVELNHVNCTGQSSEKKQRICRRSVQAEAAALINSNGSMTALALARSLKSTQHVDIKERTANRMIREERGKEDAVIKGQYEVLQSYLSILGQDNGNVVDC 483
++ RQ RLDKR SGG+ KLHRCTGAI NG K T GC VRAR CKQ WKVTE L+HV CTGQ+ KKQ I RR V+ +AAAL+++N S+T +L ++LK+T VDI ERTA RM + GK + I +Y++LQ+Y +LG+DNGN+V+C
Sbjct: 1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10123.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10123.152.1 >prot_H-canaliculatus_F_contig10123.152.1 ID=prot_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp MFERVLVGHGRQSRLDKRVSGGKGKLHRCTGAIYNGTEKTTLGCQVRARAback to top mRNA from alignment at H-canaliculatus_F_contig10123:4518..5003- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10123.152.1 ID=mRNA_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10123:4518..5003- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10123:4518..5003- >mRNA_H-canaliculatus_F_contig10123.152.1 ID=mRNA_H-canaliculatus_F_contig10123.152.1|Name=mRNA_H-canaliculatus_F_contig10123.152.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10123:4518..5003- (Hapterophycus canaliculatus Oshoro5f female)back to top |