Homology
BLAST of mRNA_H-canaliculatus_F_contig10120.149.1 vs. uniprot
Match: A0A6H5KYB6_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB6_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 5.690e-18 Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 257 QMLMHRFPAVVPAGCLPLLLCFYVIFQLVFPVRKTWEFWRVIFRSLVAPLCK 412
++LM+RFP ++PAGCLPLLLCFYVIFQ+++PV K+ EFWRVI RSLVAPLCK
Sbjct: 32 KILMNRFPPILPAGCLPLLLCFYVIFQVIYPVHKSKEFWRVIIRSLVAPLCK 83
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 414 |
| Cds size | 414 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928641.7183528-CDS-H-canaliculatus_F_contig10120:2268..2345 | 1622928641.7183528-CDS-H-canaliculatus_F_contig10120:2268..2345 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10120 2269..2345 - |
| 1696845509.1368139-CDS-H-canaliculatus_F_contig10120:2268..2345 | 1696845509.1368139-CDS-H-canaliculatus_F_contig10120:2268..2345 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10120 2269..2345 - |
| 1622928641.7323923-CDS-H-canaliculatus_F_contig10120:3161..3498 | 1622928641.7323923-CDS-H-canaliculatus_F_contig10120:3161..3498 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10120 3162..3498 - |
| 1696845509.1458976-CDS-H-canaliculatus_F_contig10120:3161..3498 | 1696845509.1458976-CDS-H-canaliculatus_F_contig10120:3161..3498 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10120 3162..3498 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10120.149.1 >prot_H-canaliculatus_F_contig10120.149.1 ID=prot_H-canaliculatus_F_contig10120.149.1|Name=mRNA_H-canaliculatus_F_contig10120.149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp
LTLPHSSPCLVSPAIAWPGARPGTLCFAPDHHRRHHPGGLRARGGDLSLP
PPLLGVCGWFGCGGADRLSLFLEMEHGTKSTRSARADADAPVPRGRTGWL
PSAAPVLLRHLSARIPGPEDLGVLASDLPILGGAPLQG back to topmRNA from alignment at H-canaliculatus_F_contig10120:2269..3498- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10120.149.1 ID=mRNA_H-canaliculatus_F_contig10120.149.1|Name=mRNA_H-canaliculatus_F_contig10120.149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1230bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10120:2269..3498- (Hapterophycus canaliculatus Oshoro5f female)
CTTACTCTCCCTCATTCCTCTCCCTGCCTGGTGTCGCCTGCTATCGCGTG
GCCTGGCGCGCGGCCTGGGACGCTTTGCTTCGCCCCCGACCACCACCGCC
GCCATCACCCCGGGGGGTTGCGCGCGCGCGGTGGTGACCTGTCGTTGCCC
CCGCCGCTGCTTGGTGTGTGCGGGTGGTTCGGCTGCGGCGGCGCCGACCG
ACTGTCTCTTTTCCTCGAAATGGAACACGGAACGAAATCAACGCGATCGG
CGAGGGCAGATGCTGATGCACCGGTTCCCCGCGGTCGTACCGGCTGGTTG
CCTTCCGCTGCTCCTGTGCTTCTACGTCATCTTTCAGGTGCGGACAAGTA
GAGGTCGAGAGGACGGAACACGCAGAACGCACTCGCGCATCGCCGTGAGA
AAGGAAGAACTCTCGTTTGCGCAGAGGAGCAGAGGCGGAAAGGGCAGAAA
GCAAAGCAAAGCGAAGCTCGCTCGCTCGAAAATGAGGTCAAAAACGCGAC
CACTCTTGAAAAACAGGCGAGATCTGCCGTCTTGCATGCACCCTCGGCCC
CGGAGGGTTACACCTCGAGCGAGTCCTTTTGTGCACGGCGTTTTTCTTGT
TTCGTGTGCAGGGCCTCTCAATCGAAGCAATCGCTGCTGCTGCCGCTACT
GCTGCTGATGTGGCGCGATTTGTGCCTTGCGGCTGTTTGAAACGAACGAC
CCTCAAGCCCCCGACGCCAAGCGACGCCTTCCAGAGACCTTTTGGTCTTG
TCCTTTCTGCAGGATGCACGGGGGCACACGAAGGCGGGAACGACGCACGC
AAGCACGTTTTCGCCGAGTTCGCGGCCGCCCGCTCCTTTCTTCGTAGAGT
GCCGATCTCTCCCTGCAGCACAGGCCCCCCTTTTTTTGTTTCTCGCAGCT
CAAATAGCGCTCGTTCTTTGCACGCTTTCCCCCTCCTGGTATTTCTACCT
CCACCCTCTAGTTTCTCCTAAATCGGGATGCGATTTGCCTTGCCACCGTT
GTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTCATTGATAGTGTTGTCGTCGTTCTTGCTAACTGCTGCCACTCCT
GCTTCTGTTGGCGTTCTGTTTGTGCTCGTGCTGTCGCTGCCCACTTCCGA
AAGCTCGTATTCCCGGTCCGGAAGACTTGGGAGTTCTGGCGAGTGATCTT
CCGATCCTTGGTGGCGCCCCTCTGCAAGGT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10120:2269..3498- >mRNA_H-canaliculatus_F_contig10120.149.1 ID=mRNA_H-canaliculatus_F_contig10120.149.1|Name=mRNA_H-canaliculatus_F_contig10120.149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10120:2269..3498- (Hapterophycus canaliculatus Oshoro5f female)
CTTACTCTCCCTCATTCCTCTCCCTGCCTGGTGTCGCCTGCTATCGCGTG
GCCTGGCGCGCGGCCTGGGACGCTTTGCTTCGCCCCCGACCACCACCGCC
GCCATCACCCCGGGGGGTTGCGCGCGCGCGGTGGTGACCTGTCGTTGCCC
CCGCCGCTGCTTGGTGTGTGCGGGTGGTTCGGCTGCGGCGGCGCCGACCG
ACTGTCTCTTTTCCTCGAAATGGAACACGGAACGAAATCAACGCGATCGG
CGAGGGCAGATGCTGATGCACCGGTTCCCCGCGGTCGTACCGGCTGGTTG
CCTTCCGCTGCTCCTGTGCTTCTACGTCATCTTTCAGCTTACTCTCCCTC
ATTCCTCTCCCTGCCTGGTGTCGCCTGCTATCGCGTGGCCTGGCGCGCGG
CCTGGGACGCTTTGCTTCGCCCCCGACCACCACCGCCGCCATCACCCCGG
GGGGTTGCGCGCGCGCGGTGGTGACCTGTCGTTGCCCCCGCCGCTGCTTG
GTGTGTGCGGGTGGTTCGGCTGCGGCGGCGCCGACCGACTGTCTCTTTTC
CTCGAAATGGAACACGGAACGAAATCAACGCGATCGGCGAGGGCAGATGC
TGATGCACCGGTTCCCCGCGGTCGTACCGGCTGGTTGCCTTCCGCTGCTC
CTGTGCTTCTACGTCATCTTTCAGCTCGTATTCCCGGTCCGGAAGACTTG
GGAGTTCTGGCGAGTGATCTTCCGATCCTTGGTGGCGCCCCTCTGCAAGG
TCTCGTATTCCCGGTCCGGAAGACTTGGGAGTTCTGGCGAGTGATCTTCC
GATCCTTGGTGGCGCCCCTCTGCAAGGT back to top
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