mRNA_H-canaliculatus_F_contig10106.139.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig10106	contig	H-canaliculatus_F_contig10106:3505..4261 +

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig10106.139.1	prot_H-canaliculatus_F_contig10106.139.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig10106 3567..4098 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928639.777846-UTR-H-canaliculatus_F_contig10106:3504..3566	1622928639.777846-UTR-H-canaliculatus_F_contig10106:3504..3566	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig10106 3505..3566 +
1696845508.0978196-UTR-H-canaliculatus_F_contig10106:3504..3566	1696845508.0978196-UTR-H-canaliculatus_F_contig10106:3504..3566	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig10106 3505..3566 +
1622928639.8221283-UTR-H-canaliculatus_F_contig10106:4098..4261	1622928639.8221283-UTR-H-canaliculatus_F_contig10106:4098..4261	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig10106 4099..4261 +
1696845508.130379-UTR-H-canaliculatus_F_contig10106:4098..4261	1696845508.130379-UTR-H-canaliculatus_F_contig10106:4098..4261	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig10106 4099..4261 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928639.7927666-CDS-H-canaliculatus_F_contig10106:3566..3600	1622928639.7927666-CDS-H-canaliculatus_F_contig10106:3566..3600	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10106 3567..3600 +
1696845508.1099563-CDS-H-canaliculatus_F_contig10106:3566..3600	1696845508.1099563-CDS-H-canaliculatus_F_contig10106:3566..3600	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10106 3567..3600 +
1622928639.8115606-CDS-H-canaliculatus_F_contig10106:3847..4098	1622928639.8115606-CDS-H-canaliculatus_F_contig10106:3847..4098	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10106 3848..4098 +
1696845508.1213493-CDS-H-canaliculatus_F_contig10106:3847..4098	1696845508.1213493-CDS-H-canaliculatus_F_contig10106:3847..4098	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10106 3848..4098 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig10106:3505..4261+
coding sequence from alignment at H-canaliculatus_F_contig10106:3505..4261+

protein sequence of mRNA_H-canaliculatus_F_contig10106.139.1

>prot_H-canaliculatus_F_contig10106.139.1 ID=prot_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MCRCVLSPHVRSLELPLARSTSGDVPAVLFCFSLKKRSRIIAATTAIRLP
PKATSAGESEIYSGNNLRESISSSDTINGTNCSNNRNDSSRGKH*

mRNA from alignment at H-canaliculatus_F_contig10106:3505..4261+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig10106.139.1 ID=mRNA_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=757bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10106:3505..4261+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCTCCTGTGGCCGGTACGCCTGCCACACGTGTGTGTGTGTGTGCGT
GCGCGCGGGGGTATGTGTAGGTGTGTTCTGTCGCCGCACGTCAGATGCTT
ACAGGGGAAAACCCCAAGATGGTCTAAGAACAGCGCGGAGGAGAGACGAA
GCTCGTCCTACGACATATAGACTAAATGTGGCAATCAGACGCCTATACGT
TTTCCTGGTATCACCATCGACATCGAAGAAAATATCGGTTGTGACAACCC
GGGTGCAATGCCGATGGAAGTGGTAGGAAGAAAAGGGCTTTTGTCCCAAC
CTTGTACATCAATTAATCCTTGTTGTTTGGTGCTCAGCAGAAGCTCTCGA
GCTACCCCTAGCACGAAGTACCTCAGGAGATGTTCCTGCGGTGTTGTTTT
GTTTTTCTTTAAAAAAACGATCGAGAATAATAGCAGCGACGACAGCAATA
AGATTGCCGCCAAAAGCAACGTCGGCAGGAGAAAGCGAAATATATAGTGG
CAACAACCTCCGCGAGAGCATCAGCAGTAGCGACACCATCAACGGCACCA
ACTGCAGCAACAACAGAAATGATAGCAGTAGAGGTAAGCACTAACGCAAT
GCAATAACAACAACAACAACAACCACAACACAAACAGAGGGGAAAAGCAA
CAGCAAAGATGACGGCGTGCCACGTGTAGCGACAAGTGCAAGATTGCTCT
GGCGATGCCGTCCTTGGGTACCTGCGACCGATGAATCCCCTCACGACTCG
CTGCAGC

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10106:3505..4261+

>mRNA_H-canaliculatus_F_contig10106.139.1 ID=mRNA_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10106:3505..4261+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTAGGTGTGTTCTGTCGCCGCACGTCAGATATGTGTAGGTGTGTTC
TGTCGCCGCACGTCAGATCTCTCGAGCTACCCCTAGCACGAAGTACCTCA
GGAGATGTTCCTGCGGTGTTGTTTTGTTTTTCTTTAAAAAAACGATCGAG
AATAATAGCAGCGACGACAGCAATAAGATTGCCGCCAAAAGCAACGTCGG
CAGGAGAAAGCGAAATATATAGTGGCAACAACCTCCGCGAGAGCATCAGC
AGTAGCGACACCATCAACGGCACCAACTGCAGCAACAACAGAAATGATAG
CAGTAGAGGTAAGCACTAACTCTCGAGCTACCCCTAGCACGAAGTACCTC
AGGAGATGTTCCTGCGGTGTTGTTTTGTTTTTCTTTAAAAAAACGATCGA
GAATAATAGCAGCGACGACAGCAATAAGATTGCCGCCAAAAGCAACGTCG
GCAGGAGAAAGCGAAATATATAGTGGCAACAACCTCCGCGAGAGCATCAG
CAGTAGCGACACCATCAACGGCACCAACTGCAGCAACAACAGAAATGATA
GCAGTAGAGGTAAGCACTAA

mRNA_H-canaliculatus_F_contig10106.139.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

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