Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 510 |
| Cds size | 285 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928639.777846-UTR-H-canaliculatus_F_contig10106:3504..3566 | 1622928639.777846-UTR-H-canaliculatus_F_contig10106:3504..3566 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10106 3505..3566 + |
| 1696845508.0978196-UTR-H-canaliculatus_F_contig10106:3504..3566 | 1696845508.0978196-UTR-H-canaliculatus_F_contig10106:3504..3566 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10106 3505..3566 + |
| 1622928639.8221283-UTR-H-canaliculatus_F_contig10106:4098..4261 | 1622928639.8221283-UTR-H-canaliculatus_F_contig10106:4098..4261 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10106 4099..4261 + |
| 1696845508.130379-UTR-H-canaliculatus_F_contig10106:4098..4261 | 1696845508.130379-UTR-H-canaliculatus_F_contig10106:4098..4261 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10106 4099..4261 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928639.7927666-CDS-H-canaliculatus_F_contig10106:3566..3600 | 1622928639.7927666-CDS-H-canaliculatus_F_contig10106:3566..3600 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10106 3567..3600 + |
| 1696845508.1099563-CDS-H-canaliculatus_F_contig10106:3566..3600 | 1696845508.1099563-CDS-H-canaliculatus_F_contig10106:3566..3600 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10106 3567..3600 + |
| 1622928639.8115606-CDS-H-canaliculatus_F_contig10106:3847..4098 | 1622928639.8115606-CDS-H-canaliculatus_F_contig10106:3847..4098 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10106 3848..4098 + |
| 1696845508.1213493-CDS-H-canaliculatus_F_contig10106:3847..4098 | 1696845508.1213493-CDS-H-canaliculatus_F_contig10106:3847..4098 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10106 3848..4098 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10106.139.1 >prot_H-canaliculatus_F_contig10106.139.1 ID=prot_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MCRCVLSPHVRSLELPLARSTSGDVPAVLFCFSLKKRSRIIAATTAIRLP
PKATSAGESEIYSGNNLRESISSSDTINGTNCSNNRNDSSRGKH* back to topmRNA from alignment at H-canaliculatus_F_contig10106:3505..4261+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10106.139.1 ID=mRNA_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=757bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10106:3505..4261+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCTCCTGTGGCCGGTACGCCTGCCACACGTGTGTGTGTGTGTGCGT
GCGCGCGGGGGTATGTGTAGGTGTGTTCTGTCGCCGCACGTCAGATGCTT
ACAGGGGAAAACCCCAAGATGGTCTAAGAACAGCGCGGAGGAGAGACGAA
GCTCGTCCTACGACATATAGACTAAATGTGGCAATCAGACGCCTATACGT
TTTCCTGGTATCACCATCGACATCGAAGAAAATATCGGTTGTGACAACCC
GGGTGCAATGCCGATGGAAGTGGTAGGAAGAAAAGGGCTTTTGTCCCAAC
CTTGTACATCAATTAATCCTTGTTGTTTGGTGCTCAGCAGAAGCTCTCGA
GCTACCCCTAGCACGAAGTACCTCAGGAGATGTTCCTGCGGTGTTGTTTT
GTTTTTCTTTAAAAAAACGATCGAGAATAATAGCAGCGACGACAGCAATA
AGATTGCCGCCAAAAGCAACGTCGGCAGGAGAAAGCGAAATATATAGTGG
CAACAACCTCCGCGAGAGCATCAGCAGTAGCGACACCATCAACGGCACCA
ACTGCAGCAACAACAGAAATGATAGCAGTAGAGGTAAGCACTAACGCAAT
GCAATAACAACAACAACAACAACCACAACACAAACAGAGGGGAAAAGCAA
CAGCAAAGATGACGGCGTGCCACGTGTAGCGACAAGTGCAAGATTGCTCT
GGCGATGCCGTCCTTGGGTACCTGCGACCGATGAATCCCCTCACGACTCG
CTGCAGC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10106:3505..4261+ >mRNA_H-canaliculatus_F_contig10106.139.1 ID=mRNA_H-canaliculatus_F_contig10106.139.1|Name=mRNA_H-canaliculatus_F_contig10106.139.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10106:3505..4261+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTAGGTGTGTTCTGTCGCCGCACGTCAGATATGTGTAGGTGTGTTC
TGTCGCCGCACGTCAGATCTCTCGAGCTACCCCTAGCACGAAGTACCTCA
GGAGATGTTCCTGCGGTGTTGTTTTGTTTTTCTTTAAAAAAACGATCGAG
AATAATAGCAGCGACGACAGCAATAAGATTGCCGCCAAAAGCAACGTCGG
CAGGAGAAAGCGAAATATATAGTGGCAACAACCTCCGCGAGAGCATCAGC
AGTAGCGACACCATCAACGGCACCAACTGCAGCAACAACAGAAATGATAG
CAGTAGAGGTAAGCACTAACTCTCGAGCTACCCCTAGCACGAAGTACCTC
AGGAGATGTTCCTGCGGTGTTGTTTTGTTTTTCTTTAAAAAAACGATCGA
GAATAATAGCAGCGACGACAGCAATAAGATTGCCGCCAAAAGCAACGTCG
GCAGGAGAAAGCGAAATATATAGTGGCAACAACCTCCGCGAGAGCATCAG
CAGTAGCGACACCATCAACGGCACCAACTGCAGCAACAACAGAAATGATA
GCAGTAGAGGTAAGCACTAA back to top
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