mRNA_H-canaliculatus_F_contig10103.136.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10103.136.1
Unique NamemRNA_H-canaliculatus_F_contig10103.136.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10103.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10103contigH-canaliculatus_F_contig10103:3..4474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size588
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10103.136.1prot_H-canaliculatus_F_contig10103.136.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10103 3..4472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928639.5761569-CDS-H-canaliculatus_F_contig10103:2..1321622928639.5761569-CDS-H-canaliculatus_F_contig10103:2..132Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 3..132 +
1696845507.961038-CDS-H-canaliculatus_F_contig10103:2..1321696845507.961038-CDS-H-canaliculatus_F_contig10103:2..132Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 3..132 +
1622928639.5865088-CDS-H-canaliculatus_F_contig10103:901..10431622928639.5865088-CDS-H-canaliculatus_F_contig10103:901..1043Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 902..1043 +
1696845507.9729657-CDS-H-canaliculatus_F_contig10103:901..10431696845507.9729657-CDS-H-canaliculatus_F_contig10103:901..1043Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 902..1043 +
1622928639.5965257-CDS-H-canaliculatus_F_contig10103:1987..20971622928639.5965257-CDS-H-canaliculatus_F_contig10103:1987..2097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 1988..2097 +
1696845507.987454-CDS-H-canaliculatus_F_contig10103:1987..20971696845507.987454-CDS-H-canaliculatus_F_contig10103:1987..2097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 1988..2097 +
1622928639.6072536-CDS-H-canaliculatus_F_contig10103:3717..38801622928639.6072536-CDS-H-canaliculatus_F_contig10103:3717..3880Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 3718..3880 +
1696845507.996647-CDS-H-canaliculatus_F_contig10103:3717..38801696845507.996647-CDS-H-canaliculatus_F_contig10103:3717..3880Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 3718..3880 +
1622928639.6199338-CDS-H-canaliculatus_F_contig10103:4432..44721622928639.6199338-CDS-H-canaliculatus_F_contig10103:4432..4472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 4433..4472 +
1696845508.0050256-CDS-H-canaliculatus_F_contig10103:4432..44721696845508.0050256-CDS-H-canaliculatus_F_contig10103:4432..4472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10103 4433..4472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10103.136.1

>prot_H-canaliculatus_F_contig10103.136.1 ID=prot_H-canaliculatus_F_contig10103.136.1|Name=mRNA_H-canaliculatus_F_contig10103.136.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=195bp
HVPERFAARRRRRHPRQLGTPPSVRRRDFSGEHGRERAGRALSASAPTAP
TAARVRPGTPARRPRGYRPPTAAAAEAAGWGAVAMPTEWTRCPHQRVWNS
VGGSGGRCRWWERLRHVGDGKTSCGPSADGVRLQRGTATRREEQVHPVLA
AAPVPQPATATAAGPPPVAAAGCWGAGSVYIPWNGSGCISGEQRH
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mRNA from alignment at H-canaliculatus_F_contig10103:3..4474+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10103.136.1 ID=mRNA_H-canaliculatus_F_contig10103.136.1|Name=mRNA_H-canaliculatus_F_contig10103.136.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4472bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10103:3..4474+ (Hapterophycus canaliculatus Oshoro5f female)
CACGTTCCTGAGCGCTTCGCCGCCCGTCGCCGCCGCCGCCACCCCCGGCA
ACTTGGGACTCCACCCAGCGTTCGCCGGCGTGACTTCTCCGGCGAGCATG
GGAGGGAGAGGGCGGGGCGAGCGCTATCAGGTAGGTTCTGTATGGTGTTC
CGGTGTTCTACCTCCTTAGCTGAGGTACCCACGTGCTGCCCTGGCCCGGC
GCCCCGTCCGCGAGCTATGGTTCCAATCCGTCGATCTCGGAGTCTGTCCG
CTATGACTGAGGGAGTCCGGCGCCCTGAATTGTAGTGAGGCGCACCTCTT
CCCTGCTCATCGTTGCTCTTGAACGTGATGTCCGTATTCTGGTCGAGAGT
GGGCGTCTGAACGGAGGCGGAGGGCTCGAATGGCAATGCCATGGTCGTCC
GCTATGCCTCCTGCTCTGCCGCCTCGACTATGCGCGGCCTGCAGTTATTC
CCTCTACGAAGCACCCACGTCCTCTTAGGTGGACTCACTCCCGACGCGAA
CCTTTGGGGAAGTCGTGACGGCCATCCCCTCGGACGTCAGCAGTACCGCG
TAGCTTGTCTTACCGCCGCTTCAAAAAGTAATGTCAGCACCTCTTGACGG
CAGACGCTCATAATCGGTATGGGTTCAGTTACTACTCTGTCACTTTCATA
GGCCGATCGGCTCCAGTGGGCACTACGATTTGTTTCCTGAGTCGTGCTCT
ATCCCGTCCTTGTCCCCCTGTCTTGTTCTGTTCCTACAAAGCTACGTTCA
TTGACCCAAGCTGTTGCCGCTGCAGCTGCCGCTACTGCTACTGCTGCTGC
TACTCCTACTACAGCCTCTTTCGCCTCTCATGCCGTCGTGGTCGTCGTCG
TGGTCGTTATCGTCGCTGGCGTTGCCCGGGTTGTAAATCGGCCAAGCAGC
CTCCGCGCCCACCGCGCCCACCGCAGCCAGGGTTCGGCCGGGTACTCCAG
CGCGACGCCCCCGCGGGTATCGACCACCGACTGCAGCAGCGGCAGAGGCA
GCAGGCTGGGGCGCCGTGGCGATGCCCACCGAGTGGACACGGTGAGTCCT
AACCTCCTTGTGTCGTGGTGCACATTCCTCTGCCGGAGCTACTTCGTATA
CACGCAGCATCGCTATCTCTCACCCGGGATGTTTGGAACCTGTCTGATAC
TTGAGCTCTTCCCAAGAGAGATTATGCCCACTGTTTGTTGCCCCCACCCT
GTTGTTTGTCTTTCGACGGCCGCCCTCACTCGAGCAGCAATGCTTCGGGA
ATGTACTGTAGTATCGTCAAGGATCAGTGCACATATTCGGTCCCCACGCA
CTCGTTTTGGGTTGGCCCATTCCCTCTAAAGGACACCTGTTATGGATTTG
TGCACCGCATGCCCCTCTTGCCGGTGAACTTCGACAGCAGTTTGTCGGTA
CATGTACGTCCTTGAGGAGAAAGCAAGCAGCCATAGAAGATACGCAGACC
GTCCAACCGTATCGGTGTATTCATGTTGGCCCACGAGCAGTCGGTCTGCC
CTGGTCATCCCCGACGCCACCTTCAGCTCGTTCATTCCTCGCTTTCTCTG
CGTATCTGCGTATCTGCGTATCTGAGGGACTTGTTGTTTGAGCCTTTCTT
GATCAAGAGTACAACAGCAGTGGTCGTATCGATCGTGAACACAAGAAAAT
GGTGCCCGTTTTTTTCGGTCAAGGCAAACGTCACCTTATCTCAAGCGCTG
TGTGCGGTATGCGGTTTCCCGACATGGGAGGGGCTCGTTAGAGACTAGTC
GGGAAGATCCGGACCCTGAACCGCGAGTGCTCACAGAGGAACATCTTCCA
CCGCCACGTACGGCATGTCGTCTCGCAATCATACTTCCTCCGTTGATGCG
TCCTGCAGCGTCGATACTGGTGCGGTTCGGCTTGGGCGGAGCTGTCGCCC
CCCACCACCGATTCTCTGACGCGTGCTGTCTTGTTGCGGTCTGCTGCCCC
CCCCCCTTGCCCTGCCATTGCTCTCTCCTTCGCAGGTGCCCACACCAACG
GGTTTGGAACAGCGTCGGCGGCAGTGGCGGCAGGTGTCGGTGGTGGGAGC
GGCTTCGGCACGTTGGCGATGGAAAGACAAGCTGCGGGCCCAGCGGTACG
CACATGTAGAAGAAGCACCTCTAGGTGGCGTTTGTTGAAGCATTTGGACG
AAAAACATAACAACACCGTTAGAACACCTCCTGAGGTACGCCGTGCGAGG
CGTAGGTCAAGGCTTCTGCTGAGCTCCAAACAGTGATGGTTCATTGATGT
GTAAGGTTGGGACAAAAGCATGAATAGGACAGACAGAGGTTTGTGTAAGT
TACCGCAGTTGTATGTAATGTGGTTGGAAAAAGATATCTTGGGACAAGAG
CAGATGTAGCGAGAGATAGGATGCACACTTCTCCAACGCGTTTCCACCTC
GCCTCAAATATCTAGCGGAGAGAACTACGTACAGTACCACCGCGGGATCC
AAATGCCGGCTTCTCCGAAAGTGAATGGGAGGGGGAGTGGGGAGCTAACA
CAAAATGGCAAACTACCTCTTCTCTGGCTGCTATTATAGATGTCGATATG
AAAGATACGTGGAGACCACGGGGCTGTGTATCAGAAGTCTACGAGGTCGG
AAACCCTTCCTTGTTTATCACCAGTTGAGATGTGGGCAGGGAAAGTGTGA
AAAGTCGGGTGGTAAGTATTCGTGAATGTGGTGTCGCCGTAGTTTCTGCT
TTTTACTTCATCTTTTTTTTGTGTTACGCTGTCGTTTTTATTCTTTTCTT
TTAACTTTGTAAGGGACGAGCCTTAGAGTTGAAGTACTCCATCTACAGTA
TGTTTCCCCGTGTGTTTTGACGAGTACATGAACATACTGTTATCTGCAAA
ATGTTTCCGTCGTACGTGAATATGAGTCCAGTTGTCCGTAGTCATGTTTT
ATCGACATACCCTACTGGGGTTATAATATGAAATCATAAAATGTGTCGAC
AAAAAGGTGGATGTGTCCACAAATGTGAAGTGATGTGTTAAGGGTAACGC
ACGGTGACGTGAGAAGAATGTGTAAGGGTTTAATTTTAATGTTGTGCAAC
AAGAGTAGGATATCATGGTGAAATAAAACATACTTCTCCCATCCCAGATC
TAGTGCGGAACGGTATGAAAATAATGTAGTCAGGAAGGTATGAAGGAAAT
CGAGTAGTACCATTCGTGTGCGGGGTAGTGAGTGTTTGTAAAGTTTGTGG
CCACGAGCACATTGATGATTCCCATCCATATGATATTCCGTAGAAACAAT
TATATCAACCCCGTATGAATATCTACCGAGGTACGTTGTGTGAGATGTTG
CTTGAGGCTTCTGTTGAGTTCCAAGTGATAAAAGGGTTTAATCATGTGAT
GCGGTCGACGAAAGCTTTCTGGCTTGTGCCTCCGTTCAACTTTCTTGGGG
CCGTTGGTTTGACGTGGCAGTCCTTGTTTGTAGCTCTTGTTGTTGCTGTT
ATTTTTCGGATTGCTCGTACTACTGCTGCTGCTCTAGCGCCTTCTTTTAT
TAGCTTTGTTAGGGTCGTGGCGGTGTTGCCTGTCGCGGAGGTGATTGTGG
TGGCTCGGCAAACGGTGGCGGCGGTGCTTCTTGTAGGGTTATGGCGTCCG
TGGTTTCGGCTTTGTGGTCGATCGTCTTGCTTGTCATCCAGCCGTTTGTT
GATAGGGAACCCCGCCACTCCTGCCGCCGTCGCCCTTGCTGCGTTCGTTT
TTGTTACGATTTCAGCGGATGGGGTCCGCCTCCAACGAGGCACCGCAACT
CGGCGCGAGGAGCAGGTTCATCCCGTACTTGCAGCCGCACCCGTACCCCA
ACCAGCAACAGCGACAGCAGCAGGTCCACCACCAGTGGCAGCAGCAGGCT
GCTGGGGGGCGGGCTCCGTCTACATCCCGTGAGTTTGAATGGACCCCTAA
GTCGTTCCTCCAATGCGACTGCTGCTGCTAGCGCCGTCTCCGGCATCGTA
CCGTGGGGGCCTGCGTCTCAGGCAACTCAAGTCGAGCTGGAAGGGTCGTG
TTGACACCAGTGCATCCTTATACCGCCGTGTTGGGCTTGTTGACTACCGC
GATAGCTCCAATACCCGCGTCGATAACGTCGTGAGCATCATCAGCCGTCC
GTCCCCATTTCCTGCGTGGAGTCCACCTGCCCGGCCCCCTAGTAAGCTGA
GATGAAGCTTGCGTAGATACCACATTTCTACTGGCACCTCGCTGCGATGG
TGTTGCTATGGGTGCAGAGTGCTGGAGAATAGGCAATGATGCACCACAGC
GACGAAACACTGAACCTCGTGATAGTACACGCTTGTACGCCCACACACCG
CTCTTGTCTACTCTTCCGCCGCCACCGTGGCATTGATGTGCTTGTTCCAT
TGAATGCTTTCCTCATGCAAGTGACATCATTCTCCTTGTTTGCCCGCACC
GTCCCGATTGGGTCCCTCCCCGCCCCACAGGTGGAATGGGTCGGGGTGCA
TCAGCGGCGAGCAGCGGCATGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10103:3..4474+

>mRNA_H-canaliculatus_F_contig10103.136.1 ID=mRNA_H-canaliculatus_F_contig10103.136.1|Name=mRNA_H-canaliculatus_F_contig10103.136.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1170bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10103:3..4474+ (Hapterophycus canaliculatus Oshoro5f female)
CACGTTCCTGAGCGCTTCGCCGCCCGTCGCCGCCGCCGCCACCCCCGGCA
ACTTGGGACTCCACCCAGCGTTCGCCGGCGTGACTTCTCCGGCGAGCATG
GGAGGGAGAGGGCGGGGCGAGCGCTATCAGCACGTTCCTGAGCGCTTCGC
CGCCCGTCGCCGCCGCCGCCACCCCCGGCAACTTGGGACTCCACCCAGCG
TTCGCCGGCGTGACTTCTCCGGCGAGCATGGGAGGGAGAGGGCGGGGCGA
GCGCTATCAGCCTCCGCGCCCACCGCGCCCACCGCAGCCAGGGTTCGGCC
GGGTACTCCAGCGCGACGCCCCCGCGGGTATCGACCACCGACTGCAGCAG
CGGCAGAGGCAGCAGGCTGGGGCGCCGTGGCGATGCCCACCGAGTGGACA
CGCCTCCGCGCCCACCGCGCCCACCGCAGCCAGGGTTCGGCCGGGTACTC
CAGCGCGACGCCCCCGCGGGTATCGACCACCGACTGCAGCAGCGGCAGAG
GCAGCAGGCTGGGGCGCCGTGGCGATGCCCACCGAGTGGACACGGTGCCC
ACACCAACGGGTTTGGAACAGCGTCGGCGGCAGTGGCGGCAGGTGTCGGT
GGTGGGAGCGGCTTCGGCACGTTGGCGATGGAAAGACAAGCTGCGGGCCC
AGCGGTGCCCACACCAACGGGTTTGGAACAGCGTCGGCGGCAGTGGCGGC
AGGTGTCGGTGGTGGGAGCGGCTTCGGCACGTTGGCGATGGAAAGACAAG
CTGCGGGCCCAGCGCGGATGGGGTCCGCCTCCAACGAGGCACCGCAACTC
GGCGCGAGGAGCAGGTTCATCCCGTACTTGCAGCCGCACCCGTACCCCAA
CCAGCAACAGCGACAGCAGCAGGTCCACCACCAGTGGCAGCAGCAGGCTG
CTGGGGGGCGGGCTCCGTCTACATCCCCGGATGGGGTCCGCCTCCAACGA
GGCACCGCAACTCGGCGCGAGGAGCAGGTTCATCCCGTACTTGCAGCCGC
ACCCGTACCCCAACCAGCAACAGCGACAGCAGCAGGTCCACCACCAGTGG
CAGCAGCAGGCTGCTGGGGGGCGGGCTCCGTCTACATCCCGTGGAATGGG
TCGGGGTGCATCAGCGGCGAGCAGCGGCATGTGGAATGGGTCGGGGTGCA
TCAGCGGCGAGCAGCGGCAT
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