|
|
Homology
BLAST of mRNA_H-canaliculatus_F_contig10064.96.1 vs. uniprot
Match: A0A6H5KT18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT18_9PHAE) HSP 1 Score: 211 bits (538), Expect = 9.870e-60 Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 1 Query: 172 SNRLIEGAVPTEFAGRSWDGYLHHVDFIVALMHVGTSLIPKSLMKLIEHVVGYTPSFDKGLSLLSSCCRTKGMRRPCAGAVLELLVFRELKREAKLMKAAKGAPKPSSSRVSQNGDNASAAVSGKRGFRRRIQFRQAAA 588
S RLIEGAVPTEFAGR W GYLHHVDFIVALMHVGTSL+PK L+KLIE +VGY PSFDKGLSLLS CC TKGMRRPCA AVLELLVFRELKRE KLMKAAK A KP+SSRV QNG + SA VSGKRGFRRRIQF QAAA
Sbjct: 1889 SYRLIEGAVPTEFAGRDWVGYLHHVDFIVALMHVGTSLMPKGLVKLIEQMVGYAPSFDKGLSLLSGCCSTKGMRRPCAVAVLELLVFRELKRETKLMKAAK-AVKPASSRVPQNGGDDSA-VSGKRGFRRRIQFGQAAA 2025
BLAST of mRNA_H-canaliculatus_F_contig10064.96.1 vs. uniprot
Match: D7FMA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA1_ECTSI) HSP 1 Score: 164 bits (416), Expect = 2.380e-43 Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 1 Query: 172 SNRLIEGAVPTEFAGRSWDGYLHHVDFIVALMHVGTSLIPKSLMKLIEHVVGYTPSFDKGLSLLSSCCRTKGMRRPCAGAVLELLVFRE 438
S RLIEGAVPTEFAGR W GYLHHVDFIVALMHVGTSL+PK L+KLIEHVVGYTPSFDKGLSLLS CC TKGMRRPCA AVLELLVFRE
Sbjct: 1595 SYRLIEGAVPTEFAGRDWVGYLHHVDFIVALMHVGTSLMPKGLVKLIEHVVGYTPSFDKGLSLLSGCCSTKGMRRPCAVAVLELLVFRE 1683
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 611 |
| Cds size | 609 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928634.3063478-CDS-H-canaliculatus_F_contig10064:1697..2003 | 1622928634.3063478-CDS-H-canaliculatus_F_contig10064:1697..2003 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10064 1698..2003 + |
| 1696845505.345571-CDS-H-canaliculatus_F_contig10064:1697..2003 | 1696845505.345571-CDS-H-canaliculatus_F_contig10064:1697..2003 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10064 1698..2003 + |
| 1622928634.317436-CDS-H-canaliculatus_F_contig10064:2393..2525 | 1622928634.317436-CDS-H-canaliculatus_F_contig10064:2393..2525 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10064 2394..2525 + |
| 1696845505.357502-CDS-H-canaliculatus_F_contig10064:2393..2525 | 1696845505.357502-CDS-H-canaliculatus_F_contig10064:2393..2525 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10064 2394..2525 + |
| 1622928634.3259952-CDS-H-canaliculatus_F_contig10064:3130..3301 | 1622928634.3259952-CDS-H-canaliculatus_F_contig10064:3130..3301 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10064 3131..3301 + |
| 1696845505.3677902-CDS-H-canaliculatus_F_contig10064:3130..3301 | 1696845505.3677902-CDS-H-canaliculatus_F_contig10064:3130..3301 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10064 3131..3301 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10064.96.1 >prot_H-canaliculatus_F_contig10064.96.1 ID=prot_H-canaliculatus_F_contig10064.96.1|Name=mRNA_H-canaliculatus_F_contig10064.96.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=203bp
ANDAAAAAAARINGDSGVVVVVNGRRDSGRWSSSSAAAKMVNGNGGGGGA
ATAAEEESNRLIEGAVPTEFAGRSWDGYLHHVDFIVALMHVGTSLIPKSL
MKLIEHVVGYTPSFDKGLSLLSSCCRTKGMRRPCAGAVLELLVFRELKRE
AKLMKAAKGAPKPSSSRVSQNGDNASAAVSGKRGFRRRIQFRQAAAGGGR
GGG back to topmRNA from alignment at H-canaliculatus_F_contig10064:1698..3303+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10064.96.1 ID=mRNA_H-canaliculatus_F_contig10064.96.1|Name=mRNA_H-canaliculatus_F_contig10064.96.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10064:1698..3303+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAACGATGCCGCTGCCGCCGCCGCCGCAAGGATCAACGGCGACAGCGG
CGTGGTCGTGGTCGTGAACGGGCGGAGGGATAGCGGGCGTTGGTCGTCCT
CGTCGGCAGCGGCGAAGATGGTCAACGGGAACGGCGGCGGCGGCGGGGCG
GCGACGGCGGCGGAAGAGGAGAGCAACCGATTGATAGAGGGGGCTGTTCC
CACGGAGTTCGCCGGCAGGAGTTGGGACGGGTACCTGCACCACGTGGATT
TTATCGTGGCGCTGATGCACGTGGGCACCTCGCTGATACCAAAGAGCTTG
ATGAAGGTAGGCGTTACCGGTGCTGGTGCTGGTGCTGGTGCTGGTGCCGT
TGGTGATGCAACTCCGTGGAGGGGTAGTGCACGCTGCTTGCCCTTCATCC
TGCGAAGGAGCAAGGGTTGGTGTAGCCCGTCGGGAGCGTTGGGCACGCTG
TCGTTTTGCTTGTCCGCCCGACCGTTCGTGCGTGGACTACTTGTCCGGGT
TACGCGACCTAGGGCGACCTCGGAATGCAGCACGCGGTGGCTTGTGTAAA
CAAACGTTTCTTTAGCCTGCTTTGCCTTTTGATACTTGGAACCCCTCAGA
TTACGCGGTGTGCCCGTCGATATCTAAGTTCCCCCCCCCCTCCTCTGCCC
CCTCCCCTGCGTTCCTTTGGTTATTCCCATGGCATGCAACGCTCAGCTTA
TCGAGCACGTCGTTGGCTACACCCCGTCCTTCGACAAGGGTCTGAGCCTC
CTGTCTAGCTGCTGTCGGACAAAGGGCATGCGACGGCCGTGTGCCGGTGC
TGTCCTGGAGCTGCTGGTCTTCCGAGAGGTACGCGTTGGAGTAAAACCGC
AACCCTTTGCCGCGCTTGCTGGCGCCGTTCACTGTGAGTTCGTGTCGGAG
ATGTGTCGGAGATGTGTCGGAGACGTCTGGTGTTACCGCGGTGTTTGTTG
CGTATTGATGGTCGTCGTCGTCGTCGTCGTCGGTTGGGAGGGGGTCGGAT
GCTCTTCCGATTGGGAATGCTTTATCCATCCAGGAGTCAGGACAGCTGTA
GAGAGCGGTTCCATCGTACTTCTCTATCTATCTATCAGAGTATGTTCGTT
GCCAAGAAGAAGGCCGATGAGGGTTACACGTACGAGTAGACCATTGAGAA
TTTCTCACATTTGGCTGAACTCCCGCGGGGTTCTGTTCCTTCCCACCTCA
GACTGGTGCGTCAATACAGCAGTCTACCAAGATTGTACACTAACGTGCAC
GTTGACTTGGTAGATGAAAGCAAGACCAACGAAAAAGCGGTTATCCACCG
GATCACGTGAGTGCCTAATCACCGCCATCGCCACGACCACGACCACGACC
CACGACTCACCGCCCACAACCACAACCACAACCACCCGCGTGCCCTTCCC
TCCTTCCTTCGGTCTTGACTGTCGGATGATCAGCTGAAGCGAGAGGCGAA
GCTCATGAAGGCCGCAAAGGGGGCTCCCAAGCCCTCCAGTTCTCGCGTCT
CCCAAAACGGGGACAACGCCTCCGCCGCCGTCAGCGGCAAGAGGGGTTTC
CGGAGACGCATCCAGTTCCGACAGGCGGCGGCGGGCGGGGGTAGGGGCGG
CGGCGG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10064:1698..3303+ >mRNA_H-canaliculatus_F_contig10064.96.1 ID=mRNA_H-canaliculatus_F_contig10064.96.1|Name=mRNA_H-canaliculatus_F_contig10064.96.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1218bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10064:1698..3303+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAACGATGCCGCTGCCGCCGCCGCCGCAAGGATCAACGGCGACAGCGG
CGTGGTCGTGGTCGTGAACGGGCGGAGGGATAGCGGGCGTTGGTCGTCCT
CGTCGGCAGCGGCGAAGATGGTCAACGGGAACGGCGGCGGCGGCGGGGCG
GCGACGGCGGCGGAAGAGGAGAGCAACCGATTGATAGAGGGGGCTGTTCC
CACGGAGTTCGCCGGCAGGAGTTGGGACGGGTACCTGCACCACGTGGATT
TTATCGTGGCGCTGATGCACGTGGGCACCTCGCTGATACCAAAGAGCTTG
ATGAAGGCAAACGATGCCGCTGCCGCCGCCGCCGCAAGGATCAACGGCGA
CAGCGGCGTGGTCGTGGTCGTGAACGGGCGGAGGGATAGCGGGCGTTGGT
CGTCCTCGTCGGCAGCGGCGAAGATGGTCAACGGGAACGGCGGCGGCGGC
GGGGCGGCGACGGCGGCGGAAGAGGAGAGCAACCGATTGATAGAGGGGGC
TGTTCCCACGGAGTTCGCCGGCAGGAGTTGGGACGGGTACCTGCACCACG
TGGATTTTATCGTGGCGCTGATGCACGTGGGCACCTCGCTGATACCAAAG
AGCTTGATGAAGCTTATCGAGCACGTCGTTGGCTACACCCCGTCCTTCGA
CAAGGGTCTGAGCCTCCTGTCTAGCTGCTGTCGGACAAAGGGCATGCGAC
GGCCGTGTGCCGGTGCTGTCCTGGAGCTGCTGGTCTTCCGAGAGCTTATC
GAGCACGTCGTTGGCTACACCCCGTCCTTCGACAAGGGTCTGAGCCTCCT
GTCTAGCTGCTGTCGGACAAAGGGCATGCGACGGCCGTGTGCCGGTGCTG
TCCTGGAGCTGCTGGTCTTCCGAGAGCTGAAGCGAGAGGCGAAGCTCATG
AAGGCCGCAAAGGGGGCTCCCAAGCCCTCCAGTTCTCGCGTCTCCCAAAA
CGGGGACAACGCCTCCGCCGCCGTCAGCGGCAAGAGGGGTTTCCGGAGAC
GCATCCAGTTCCGACAGGCGGCGGCGGGCGGGGGTAGGGGCGGCGGCCTG
AAGCGAGAGGCGAAGCTCATGAAGGCCGCAAAGGGGGCTCCCAAGCCCTC
CAGTTCTCGCGTCTCCCAAAACGGGGACAACGCCTCCGCCGCCGTCAGCG
GCAAGAGGGGTTTCCGGAGACGCATCCAGTTCCGACAGGCGGCGGCGGGC
GGGGGTAGGGGCGGCGGC back to top
|