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Homology
BLAST of mRNA_H-canaliculatus_F_contig10062.94.1 vs. uniprot
Match: D7G2I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I0_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 2.140e-12 Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 Query: 1 QVKRIMIYQDMGFQENVLLSAIKSGSLDDFSAVLSSVSNRLTPQEVTDLILRADEGK 171
QVKR+MIYQDM QEN+L SAI S S + F VLSSV++RLTP E + +LRAD+GK
Sbjct: 149 QVKRMMIYQDMDLQENLLHSAINSRSTNAFDTVLSSVTSRLTPTEARNFLLRADDGK 205
BLAST of mRNA_H-canaliculatus_F_contig10062.94.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 2.250e-12 Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 Query: 1 QVKRIMIYQDMGFQENVLLSAIKSGSLDDFSAVLSSVSNRLTPQEVTDLILRADEGK 171
QVKR+MIYQDM QEN+L SAI S S + F VLSSV++RLTP E + +LRAD+GK
Sbjct: 193 QVKRMMIYQDMDLQENLLHSAINSRSTNAFDTVLSSVTSRLTPTEARNFLLRADDGK 249
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.2 |
| Seed ortholog evalue | 6.7e-08 |
| Seed eggNOG ortholog | 2880.D7FLB1 |
| KEGG ko | ko:K04981 |
| KEGG TC | 1.A.4.5.8 |
| KEGG Pathway | ko04978,map04978 |
| EggNOG free text desc. | ion channel activity |
| EggNOG OGs | KOG3614@1,KOG3614@2759 |
| EC | 2.7.11.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko04040 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 261 |
| Cds size | 246 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928634.148415-CDS-H-canaliculatus_F_contig10062:415..541 | 1622928634.148415-CDS-H-canaliculatus_F_contig10062:415..541 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10062 416..541 - |
| 1696845505.2138832-CDS-H-canaliculatus_F_contig10062:415..541 | 1696845505.2138832-CDS-H-canaliculatus_F_contig10062:415..541 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10062 416..541 - |
| 1622928634.1583245-CDS-H-canaliculatus_F_contig10062:757..877 | 1622928634.1583245-CDS-H-canaliculatus_F_contig10062:757..877 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10062 758..877 - |
| 1696845505.2340624-CDS-H-canaliculatus_F_contig10062:757..877 | 1696845505.2340624-CDS-H-canaliculatus_F_contig10062:757..877 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10062 758..877 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928634.1687868-UTR-H-canaliculatus_F_contig10062:877..892 | 1622928634.1687868-UTR-H-canaliculatus_F_contig10062:877..892 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10062 878..892 - |
| 1696845505.2454574-UTR-H-canaliculatus_F_contig10062:877..892 | 1696845505.2454574-UTR-H-canaliculatus_F_contig10062:877..892 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10062 878..892 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10062.94.1 >prot_H-canaliculatus_F_contig10062.94.1 ID=prot_H-canaliculatus_F_contig10062.94.1|Name=mRNA_H-canaliculatus_F_contig10062.94.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp
MIYQDMGFQENVLLSAIKSGSLDDFSAVLSSVSNRLTPQEVTDLILRADE
GKNILHAAAEGGSKDVFEAVLRALQREVDAEK back to topmRNA from alignment at H-canaliculatus_F_contig10062:416..892- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10062.94.1 ID=mRNA_H-canaliculatus_F_contig10062.94.1|Name=mRNA_H-canaliculatus_F_contig10062.94.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=477bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10062:416..892- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGAAGCGCATTATGATCTACCAGGACATGGGCTTCCAGGAAAACGT
CTTACTTTCTGCAATCAAGAGCGGGAGCCTGGATGATTTCAGTGCCGTAC
TATCTTCTGTGTCAAACCGCCTCACTCCACAGGAGGTACGACGTGCCGTT
GTATCCGCATGCTACTCGGTGTGCCGTCGAAGGCCTCTGAAGTGTCTCGG
TTTTATGATCGCTGTGTCCTGCTTTTTTTCGATTCACCAGCACCCTCCGA
CACCTCGACGATGTCCCCGCTCGTGGTGGGTACCGGGGCAGCCCTGTTCT
CAATGTGCGTCTCGGTCTATTCGTCTAAACCTAAACACCCTTCCTGACCA
GGTCACCGATCTCATCCTTCGTGCGGATGAGGGCAAGAATATCCTGCATG
CAGCGGCGGAGGGCGGTAGCAAGGACGTCTTTGAAGCCGTGCTACGTGCT
CTACAGCGAGAGGTGGATGCAGAGAAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10062:416..892- >mRNA_H-canaliculatus_F_contig10062.94.1 ID=mRNA_H-canaliculatus_F_contig10062.94.1|Name=mRNA_H-canaliculatus_F_contig10062.94.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10062:416..892- (Hapterophycus canaliculatus Oshoro5f female)
ATGATCTACCAGGACATGGGCTTCCAGGAAAACGTCTTACTTTCTGCAAT
CAAGAGCGGGAGCCTGGATGATTTCAGTGCCGTACTATCTTCTGTGTCAA
ACCGCCTCACTCCACAGGAGATGATCTACCAGGACATGGGCTTCCAGGAA
AACGTCTTACTTTCTGCAATCAAGAGCGGGAGCCTGGATGATTTCAGTGC
CGTACTATCTTCTGTGTCAAACCGCCTCACTCCACAGGAGGTCACCGATC
TCATCCTTCGTGCGGATGAGGGCAAGAATATCCTGCATGCAGCGGCGGAG
GGCGGTAGCAAGGACGTCTTTGAAGCCGTGCTACGTGCTCTACAGCGAGA
GGTGGATGCAGAGAAGGTCACCGATCTCATCCTTCGTGCGGATGAGGGCA
AGAATATCCTGCATGCAGCGGCGGAGGGCGGTAGCAAGGACGTCTTTGAA
GCCGTGCTACGTGCTCTACAGCGAGAGGTGGATGCAGAGAAG back to top
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