mRNA_H-canaliculatus_F_contig10049.82.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10049.82.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI) HSP 1 Score: 302 bits (773), Expect = 3.060e-94 Identity = 153/221 (69.23%), Postives = 173/221 (78.28%), Query Frame = 1 Query: 1 GVLIFEGDSAFRRNEVHTDDSVEQGKGGAISNTGSGSIFFKSKLTMDENRAYGFFEGIGGAIYTRGNIVIEGDSQFSLNIASNGGGIYQTAIGSLVFNGMATFSENSAYDLRGGGLYNGGGVVDFXXXXXXXXXXASGSGDGGQGGAIYNGDEGVVTLTGSTTFSSNSAYWGXXXXXDDGDVEDGEAASTTTFPADTVFVDNRAEYCPNVHDGDNDNCPEV 663
G L FEGD+ F RN VHT+DSVEQGK GAISNTGSG+I+FKSKLTM +N A GFFEG+GGAIY RG I+++G+S FSLN AS+GGGIYQT IG + FN MATFSENSAY+LRGGGL N GGVV+ ASGSGDGG GGAIYNG+EG VTL GSTTF N+AY G DDG V +GEAAS TTFP DTVF DNRA++CP+V DGDNDNCP V
Sbjct: 161 GTLTFEGDATFERNAVHTEDSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGLGGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSENSAYELRGGGLMNYGGVVNINAGSLFELNGASGSGDGGLGGAIYNGNEGAVTLMGSTTFRENAAYEGGAIYTDDGSVANGEAASVTTFPDDTVFEDNRADFCPDVFDGDNDNCPVV 381
BLAST of mRNA_H-canaliculatus_F_contig10049.82.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI) HSP 1 Score: 297 bits (760), Expect = 2.660e-92 Identity = 152/221 (68.78%), Postives = 172/221 (77.83%), Query Frame = 1 Query: 1 GVLIFEGDSAFRRNEVHTDDSVEQGKGGAISNTGSGSIFFKSKLTMDENRAYGFFEGIGGAIYTRGNIVIEGDSQFSLNIASNGGGIYQTAIGSLVFNGMATFSENSAYDLRGGGLYNGGGVVDFXXXXXXXXXXASGSGDGGQGGAIYNGDEGVVTLTGSTTFSSNSAYWGXXXXXDDGDVEDGEAASTTTFPADTVFVDNRAEYCPNVHDGDNDNCPEV 663
G L FEGD+ F RNEVHT+DSVEQGK GAISNTGSG+I FKSKLTM +N A GFFEGIGGAIY RG IV+EG+S FSLN +S+GGGIYQT+IG++ FNG ATFSENSAYDL GGGL N GGVV+ ASGSGDGG GGAIYN + GVVTL GSTTF N+A+ G DGD E+GE AS TTFP DTVF DN AE+CP+VH+GD+DNCP V
Sbjct: 161 GTLTFEGDATFERNEVHTEDSVEQGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGIGGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVTLMGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTVFEDNSAEHCPDVHNGDSDNCPVV 381
BLAST of mRNA_H-canaliculatus_F_contig10049.82.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI) HSP 1 Score: 210 bits (534), Expect = 2.110e-60 Identity = 115/221 (52.04%), Postives = 139/221 (62.90%), Query Frame = 1 Query: 1 GVLIFEGDSAFRRNEVHTDDSVEQGKGGAISNTGSGSIFFKSKLTMDENRAYGFFEGIGGAIYTRGNIVIEGDSQFSLNIASNGGGIYQTAIGSLVFNGMATFSENSAYDLRGGGLYNGGGVVDFXXXXXXXXXXASGSGDGGQGGAIYNGDEGVVTLTGSTTFSSNSAYWGXXXXXDDGDVEDGEAASTTTFPADTVFVDNRAEYCPNVHDGDNDNCPEV 663
G L F+GD+ F RN HT+ S ++G GGAISNTGSG+I FKSKLTM +N+A F G+GGAIY RG I++EG S FSLN A+ GGGI+QT+IG++ FNGMATFSEN A + GGGL N GGVV+ AS SGDGG GGAI+N +WG +D D S TTFP D RAEYCP+VH+GD+DNCP V
Sbjct: 46 GTLTFDGDATFERNVAHTESSNQRGNGGAISNTGSGTILFKSKLTMKDNQADANFAGLGGAIYNRGEIIVEGASLFSLNHAAAGGGIHQTSIGTMTFNGMATFSENFAGEPTGGGLTNNGGVVNINAGSLFEHNWASASGDGGFGGAIFNTKXXXXXXXXXXXXXXXXXHWGGAIYTNDADGP----GSVTTFPDDXXXXXXRAEYCPDVHNGDDDNCPVV 262
BLAST of mRNA_H-canaliculatus_F_contig10049.82.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI) HSP 1 Score: 177 bits (450), Expect = 2.440e-49 Identity = 97/177 (54.80%), Postives = 119/177 (67.23%), Query Frame = 1 Query: 136 MDENRAYGFFEGIGGAIYTRGNIVIEGDSQFSLNIASNGGGIYQTAIGSLVFNGMATFSENSAYDLRGGGLYNGGGVVDFXXXXXXXXXXASGSGDGGQGGAIYNGDEGVVTLTGSTTFSSNSAYWGXXXXXDDGDVEDGEAASTTTFPADTVFVDNRAE-YCPNVHDGDNDNCPEV 663
M+EN G + G+GGAIY RG I +EG+S FS N +S+GGGIYQT+IG + FN MATF N A +LRGGGL N GGVV+ A+ + DGG+GGAI+N + GVVTL G TTF N A+WG DDG AS TTFP DTVF DN A+ YCP+VH+GD++NCP V
Sbjct: 1 MNENDTDGQYGGLGGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHNVAENLRGGGLMNDGGVVNINAGSLFEQNFAAANADGGRGGAIHNRNGGVVTLMGPTTFRENGAWWGGAIYTDDG-----YPASVTTFPDDTVFEDNSADAYCPDVHNGDDNNCPVV 172
BLAST of mRNA_H-canaliculatus_F_contig10049.82.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE) HSP 1 Score: 120 bits (300), Expect = 5.620e-26 Identity = 84/226 (37.17%), Postives = 110/226 (48.67%), Query Frame = 1 Query: 1 GVLIFEGDSAFRRNEVHTDDSVEQGKGGAISNTGSGSIFFKSKLTMDENRAYGFFEGI-GGAIYTRGNIVIEGDSQFSLNIASNGGGIYQTAIGSLVFNGMATFSENSAYDLRGGGLYNGGGVVDFXXXXXXXXXXASGSGDGGQGGAIYNGDEGVVTLTGSTTFSSNSAYWGXXXXXDDGD------VEDGEAASTTTFPADTVFVDNRAEYCPN-VHDGDNDNC 654
G L FE D+ F N ++ G GGAIS GSI+F KLTM +N A +F G GGAI+ RG+IV++G+++F+ NI GG I+Q +LVFN TF+ N D GG + N GG V A SGDGG LTGSTTF N WG ++ T ++P DT+F DN A+YC + D D + C
Sbjct: 152 GSLTFEKDATFSGN-LNDRLYYGSGPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGRGGAIFQEKWATLVFNDFVTFTSNKCLDTFGGTIANIGGDVTANAGSLFFDGFAENSGDGGLXXXXXXXXXXXXXLTGSTTFRQNYGNWGGAVFNSAVPNAYFTAEDESYVMPTISYPEDTIFEDNDAQYCNDFASDFDEETC 376 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10049.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10049.82.1 >prot_H-canaliculatus_F_contig10049.82.1 ID=prot_H-canaliculatus_F_contig10049.82.1|Name=mRNA_H-canaliculatus_F_contig10049.82.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=177bp MDENRAYGFFEGIGGAIYTRGNIVIEGDSQFSLNIASNGGGIYQTAIGSLback to top mRNA from alignment at H-canaliculatus_F_contig10049:381..4396- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10049.82.1 ID=mRNA_H-canaliculatus_F_contig10049.82.1|Name=mRNA_H-canaliculatus_F_contig10049.82.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4016bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10049:381..4396- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10049:381..4396- >mRNA_H-canaliculatus_F_contig10049.82.1 ID=mRNA_H-canaliculatus_F_contig10049.82.1|Name=mRNA_H-canaliculatus_F_contig10049.82.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1062bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10049:381..4396- (Hapterophycus canaliculatus Oshoro5f female)back to top |