mRNA_H-canaliculatus_F_contig10033.69.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: D8LU31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU31_ECTSI) HSP 1 Score: 167 bits (423), Expect = 3.830e-47 Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 1 Query: 10 FGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339 FG RLLGLPT LRLA LSRNITSPLAMAICS++GAD SLAIAIVV+TGVIGANFGAT LDALGV+DPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAV+MALTATA Sbjct: 393 FGTALVSRLLGLPTTLRLAALSRNITSPLAMAICSLIGADPSLAIAIVVLTGVIGANFGATALDALGVKDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVSMALTATA 502
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S1ZXA6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZXA6_TRICV) HSP 1 Score: 119 bits (297), Expect = 7.860e-31 Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = 1 Query: 1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339 G FG RLL + LRL LSRNITSPLAMAI SM+GAD+ LA++ VV+TG+IGANFGA++LDA G+ DP ARGL G +AHGLGTAA NE AF F+A+ MALTA+A Sbjct: 121 GGLFGTSLLVRLLAIADPILRLCMLSRNITSPLAMAIASMIGADVGLAVSTVVVTGLIGANFGASILDAFGITDPVARGLGVGAAAHGLGTAAFANEGDAFPFAAIGMALTASA 234
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S2R126_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R126_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.330e-30 Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 1 Query: 1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339 G FG R L + LRL+ LSRNITSPLAMAI ++GAD+SLA+++VVMTG+IGANFGA +LDA G+ D ARGL G +AHGLGTAA NEP AF F+A++MALTA+A Sbjct: 72 GGLFGTAALVRFLKIANPMLRLSLLSRNITSPLAMAIAGILGADVSLAVSMVVMTGLIGANFGAAILDAFGITDAVARGLGIGAAAHGLGTAAFANEPDAFPFAAISMALTASA 185
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A0G4H6K0_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H6K0_VITBC) HSP 1 Score: 120 bits (302), Expect = 9.530e-30 Identity = 68/109 (62.39%), Postives = 88/109 (80.73%), Query Frame = 1 Query: 10 FGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTAT 336 FG RL+GL + LRLATL R+IT+PLA+ + +M+GAD LA+A+VV+TG++GANFGA +L +LG+ +P ARGLA G +AHGLGTAA+VNE AF FSA+AMALTAT Sbjct: 418 FGTAIGARLIGLASDLRLATLPRSITAPLAIEVANMLGADGRLAVALVVLTGILGANFGALLLTSLGITNPTARGLAMGSAAHGLGTAAIVNEGEAFTFSAIAMALTAT 526
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A1Z5JZL6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZL6_FISSO) HSP 1 Score: 119 bits (297), Expect = 3.340e-29 Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 1 Query: 1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339 G +G RLL + LRL+ LSRNITSPLAMAI ++GAD+SLA+ VV+TGV GANFGAT+L ALG++DP ARGL+ G SAHGLGTAA NE AF F+A+AMALTA+A Sbjct: 362 GGLYGTALLVRLLDVGNPFLRLSLLSRNITSPLAMAIAGIIGADVSLAVTAVVITGVFGANFGATILTALGIKDPVARGLSIGASAHGLGTAAFANEKDAFPFAAIAMALTASA 475
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: B7FZ18_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZ18_PHATC) HSP 1 Score: 117 bits (294), Expect = 1.090e-28 Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = 1 Query: 1 GDHFGADCSRRLLGLPT-ALRLATLSRNITSPLAMAICSMVG-ADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339 G FG + R L + A+RL+ LSRNITSPLAM+I S++G AD+SLA+++VV+TG+IGANFGAT+LDALG+RD ARGL G +AHGLGTAA+VNE AF F+A++MALTA+A Sbjct: 388 GGLFGTAWAVRFLSIGNPAVRLSLLSRNITSPLAMSIASILGGADVSLAVSMVVITGLIGANFGATLLDALGIRDAVARGLGMGAAAHGLGTAAIVNEKDAFPFAAISMALTASA 502
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: B8CB30_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB30_THAPS) HSP 1 Score: 115 bits (287), Expect = 1.040e-27 Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 1 GDHFGADCSRRLLGLPTAL-RLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339 G +G + RLL + + RL+ LSRNITSPLAMAI S++GAD+SLA+ IVV+TG+ GANFGA++LDA G++D ARGL G +AHGLGTAA +E AF F+A+AMALTA+A Sbjct: 391 GGLYGTAAAVRLLNIVNPMIRLSLLSRNITSPLAMAIASILGADVSLAVTIVVLTGLFGANFGASILDAAGIKDSVARGLGIGAAAHGLGTAAFADEKDAFPFAAIAMALTASA 504
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S3VAA5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAA5_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.080e-27 Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1 Query: 1 GDHFGADCSRRLLGLPTA-LRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALTATA 339 G FG RL + LRL LSRNITSPLAMAI ++GAD+SLA+++VV+TG+IGANFGA +LDA+GV+D ARGL G +AHGLGTAA NE AF F+A++MALTA+A Sbjct: 396 GGLFGTAAMARLFNVGNPMLRLCLLSRNITSPLAMAIAGILGADVSLAVSMVVVTGLIGANFGAAILDAVGVKDAVARGLGIGAAAHGLGTAAFANEKDAFPFAAISMALTASA 509
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S2Y5J7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5J7_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.860e-27 Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 1 GDHFGADCSRRLL--GLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAMVNEPTAFAFSAVAMALT 330 G FG RLL G PT +RLA LSRNITSPLAMAI ++GAD+SLA+++VV+TG++GANFGA++L ALG++D ARGL G +AHGLGTAA+V+E AF F+A+AMALT Sbjct: 447 GGLFGTAAIVRLLEIGDPT-IRLALLSRNITSPLAMAIAGILGADVSLAVSMVVITGLLGANFGASILSALGIKDAVARGLGIGAAAHGLGTAAIVDEKDAFPFAAIAMALT 557
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Match: A0A7S0EAH9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EAH9_9EUKA) HSP 1 Score: 107 bits (267), Expect = 2.140e-27 Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 1 Query: 10 FGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIVVMTGVIGANFGATVLDALGVRDPAARGLAQGGSAHGLGTAAM-VNEPTAFAFSAVAMALTA 333 FG R +GLP+A+RLA + R +T+PLA+AI M+GAD SLA IVV+TG++ ANFGA LDA+ +DP ARGL G + HGLGTAAM +EP AF F+A+AMAL A Sbjct: 26 FGTAAFARYIGLPSAVRLAAVPRQVTAPLAIAIAGMLGADPSLAATIVVLTGLVVANFGAAALDAIKCKDPVARGLTMGAAGHGLGTAAMSASEPDAFPFAAIAMALNA 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10033.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10033.69.1 >prot_H-canaliculatus_F_contig10033.69.1 ID=prot_H-canaliculatus_F_contig10033.69.1|Name=mRNA_H-canaliculatus_F_contig10033.69.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp GDHFGADCSRRLLGLPTALRLATLSRNITSPLAMAICSMVGADLSLAIAIback to top mRNA from alignment at H-canaliculatus_F_contig10033:465..1694+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10033.69.1 ID=mRNA_H-canaliculatus_F_contig10033.69.1|Name=mRNA_H-canaliculatus_F_contig10033.69.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1230bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10033:465..1694+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10033:465..1694+ >mRNA_H-canaliculatus_F_contig10033.69.1 ID=mRNA_H-canaliculatus_F_contig10033.69.1|Name=mRNA_H-canaliculatus_F_contig10033.69.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10033:465..1694+ (Hapterophycus canaliculatus Oshoro5f female)back to top |