mRNA_H-canaliculatus_F_contig1003.66.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: D7G4Z5_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Z5_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.220e-59 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 Query: 1 MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFE KYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG
Sbjct: 1 MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 92
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A835YST4_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST4_9STRA) HSP 1 Score: 145 bits (367), Expect = 8.980e-44 Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 1 Query: 1 MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
ME+SG S+ +VSDMDDH EMR DAQ WAAAAIES ++EK IS+ IK + + KYGPTWHCIVGTDFKA+VTHE+K F+FFYHGKMA CLYKAG
Sbjct: 1 MENSGASSSVVSDMDDHSEMRTDAQAWAAAAIESHAEEKAISKDIKGRMDDKYGPTWHCIVGTDFKAYVTHETKTFMFFYHGKMAICLYKAG 92
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A7S2V5R3_9STRA (Dynein light chain (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5R3_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.890e-39 Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 1 Query: 1 MESSGVS-AKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
MES G K+V DMD+HGEM+ DA+N AAAA+E +EK+ISR IK+ F+QKYGPTWHCIVGTDF+AFVTHESKHF+FFY GK+A CLYKAG
Sbjct: 39 MESRGSGEGKLVCDMDEHGEMKNDAKNVAAAAVEQHQEEKDISRHIKAHFDQKYGPTWHCIVGTDFRAFVTHESKHFIFFYIGKIAICLYKAG 131
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A7S2CIH5_9STRA (Dynein light chain n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIH5_9STRA) HSP 1 Score: 125 bits (313), Expect = 3.130e-35 Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 1 Query: 19 SAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
S+K+V DMD+HGEM+ DA A AIE ++EK IS +IKS F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKAG
Sbjct: 31 SSKIVCDMDEHGEMKADAHTVAGEAIEKFTEEKAISTSIKSFFDAKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKAG 116
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A7S0SUZ6_9STRA (Dynein light chain n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUZ6_9STRA) HSP 1 Score: 121 bits (304), Expect = 4.700e-34 Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 1 Query: 7 SSGVSAKMVSDMDDHG---EMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 273
SSG +KMV DM+DHG EM+ DA + A+ A+E+ +EK+ISR IKS F+QKYGPTWHCIVG+DF+AFVT+ESKHF+FFY GK A CLYK
Sbjct: 10 SSGPHSKMVCDMEDHGIHGEMKNDALSVASTALEANQEEKDISRHIKSFFDQKYGPTWHCIVGSDFRAFVTYESKHFIFFYIGKTAICLYKT 101
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: F0XW00_AURAN (Dynein light chain (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW00_AURAN) HSP 1 Score: 111 bits (277), Expect = 3.140e-30 Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1 Query: 43 DDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
D+HGEM+ + N AA AIE E E+S+ IK+ F+QKYGPTWHCIVG+DF+A+VTHESK+F+FFY GK A CLYK G
Sbjct: 1 DEHGEMKQEVYNLAAYAIEQYVTEMEVSKHIKAHFDQKYGPTWHCIVGSDFRAYVTHESKNFIFFYQGKTAICLYKCG 78
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A482SJR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJR4_9ARCH) HSP 1 Score: 107 bits (267), Expect = 8.890e-29 Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 1 Query: 58 MRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 273
M+ DA AAA+E+ ++EK+IS+ +K+ F+QKYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKA
Sbjct: 1 MKHDAFTVVAAALETNTEEKDISKHVKTYFDQKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKA 72
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A8J2SHI5_9STRA ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHI5_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.500e-26 Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1 Query: 40 MDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
+D+HGEM+ +A N AA A+E E EIS+ IK++F++KYGPTWHCIVG+DFK THE+KHF+FFYHGK A LYK G
Sbjct: 300 VDEHGEMKQEAYNLAAYAVEQFVTEMEISKHIKAQFDEKYGPTWHCIVGSDFKLQCTHEAKHFIFFYHGKTAVALYKCG 378
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A7S1YV50_9STRA (Dynein light chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YV50_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.620e-25 Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1 Query: 25 KMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
K + DMD+H EM+ DA + A AIES EK+ + IK F+ KYGPTWH IVG+DFKA+ THE+K F FFY GK A C+YKAG
Sbjct: 36 KQICDMDEHSEMKSDAISVATNAIESHIQEKDQANHIKRAFDAKYGPTWHVIVGSDFKAYGTHEAKTFFFFYVGKAAICMYKAG 119
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Match: A0A0R3UCN8_MESCO (Dynein light chain n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UCN8_MESCO) HSP 1 Score: 94.4 bits (233), Expect = 3.090e-23 Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 13 GVSAKMV---SDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEQKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
G S K V +DM D EM+ DA + A+ A+++++ EK+I+ AIK KF+ KYGPTWHCIVG +F ++VTHESKHF++FY G++A L+K+G
Sbjct: 14 GQSQKAVVKNADMSD--EMQHDAVDCASEAMQNQTIEKDIAAAIKKKFDSKYGPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKSG 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1003.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1003.66.1 >prot_H-canaliculatus_F_contig1003.66.1 ID=prot_H-canaliculatus_F_contig1003.66.1|Name=mRNA_H-canaliculatus_F_contig1003.66.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEback to top mRNA from alignment at H-canaliculatus_F_contig1003:19198..23717+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1003.66.1 ID=mRNA_H-canaliculatus_F_contig1003.66.1|Name=mRNA_H-canaliculatus_F_contig1003.66.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4520bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1003:19198..23717+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1003:19198..23717+ >mRNA_H-canaliculatus_F_contig1003.66.1 ID=mRNA_H-canaliculatus_F_contig1003.66.1|Name=mRNA_H-canaliculatus_F_contig1003.66.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1003:19198..23717+ (Hapterophycus canaliculatus Oshoro5f female)back to top |