Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 524 |
| Cds size | 324 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928627.0811162-UTR-H-canaliculatus_F_contig100:50104..50304 | 1622928627.0811162-UTR-H-canaliculatus_F_contig100:50104..50304 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 50105..50304 + |
| 1696845500.1630366-UTR-H-canaliculatus_F_contig100:50104..50304 | 1696845500.1630366-UTR-H-canaliculatus_F_contig100:50104..50304 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 50105..50304 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928627.097666-CDS-H-canaliculatus_F_contig100:50304..50628 | 1622928627.097666-CDS-H-canaliculatus_F_contig100:50304..50628 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 50305..50628 + |
| 1696845500.1763072-CDS-H-canaliculatus_F_contig100:50304..50628 | 1696845500.1763072-CDS-H-canaliculatus_F_contig100:50304..50628 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 50305..50628 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig100.29.1 >prot_H-canaliculatus_F_contig100.29.1 ID=prot_H-canaliculatus_F_contig100.29.1|Name=mRNA_H-canaliculatus_F_contig100.29.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MPRRCLDIIIRLGHDMAKTGHDVAGCVPSSCHMQFAFLRVKCRGFTVPFS
HVRPTKRVSVESEPTRGKGNTILLTLRVGRSSKDRCVLSFCVVVQVQRLL
LLEERRV* back to topmRNA from alignment at H-canaliculatus_F_contig100:50105..50628+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig100.29.1 ID=mRNA_H-canaliculatus_F_contig100.29.1|Name=mRNA_H-canaliculatus_F_contig100.29.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=524bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:50105..50628+ (Hapterophycus canaliculatus Oshoro5f female)
GAATGCTCGGATTCAAGAACGACACAGAGCAGTCGTTGAACTCGTCCGTA
ACGATCGGTGCCGCGGCACGGGATGAACATTGCGCAAGAGCAAGATGCTT
GGTTTGTGAGACCGTGTGCAACGCGACGGTCAAGGTCACAATTTCTTACC
AACGGCATCGAAGCAACAGGCAGGGCTGGAATAAGGACACAGATACATAG
ATGCCTAGACGGTGTCTCGACATAATAATAAGACTGGGTCATGATATGGC
TAAGACTGGTCATGATGTGGCTGGCTGTGTACCAAGCTCATGTCACATGC
AGTTCGCCTTCTTGAGAGTGAAGTGTCGAGGTTTTACTGTACCCTTTTCC
CACGTACGACCAACCAAACGGGTGAGCGTTGAATCAGAGCCAACTCGTGG
AAAGGGAAACACAATATTGCTCACTCTGCGGGTGGGACGATCATCGAAAG
ACCGGTGCGTGCTTTCGTTTTGTGTTGTCGTCCAGGTGCAGCGCTTGCTC
CTGCTCGAAGAGAGAAGGGTCTGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig100:50105..50628+ >mRNA_H-canaliculatus_F_contig100.29.1 ID=mRNA_H-canaliculatus_F_contig100.29.1|Name=mRNA_H-canaliculatus_F_contig100.29.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:50105..50628+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTAGACGGTGTCTCGACATAATAATAAGACTGGGTCATGATATGGC
TAAGACTGGTCATGATGTGGCTGGCTGTGTACCAAGCTCATGTCACATGC
AGTTCGCCTTCTTGAGAGTGAAGTGTCGAGGTTTTACTGTACCCTTTTCC
CACGTACGACCAACCAAACGGGTGAGCGTTGAATCAGAGCCAACTCGTGG
AAAGGGAAACACAATATTGCTCACTCTGCGGGTGGGACGATCATCGAAAG
ACCGGTGCGTGCTTTCGTTTTGTGTTGTCGTCCAGGTGCAGCGCTTGCTC
CTGCTCGAAGAGAGAAGGGTCTGAATGCCTAGACGGTGTCTCGACATAAT
AATAAGACTGGGTCATGATATGGCTAAGACTGGTCATGATGTGGCTGGCT
GTGTACCAAGCTCATGTCACATGCAGTTCGCCTTCTTGAGAGTGAAGTGT
CGAGGTTTTACTGTACCCTTTTCCCACGTACGACCAACCAAACGGGTGAG
CGTTGAATCAGAGCCAACTCGTGGAAAGGGAAACACAATATTGCTCACTC
TGCGGGTGGGACGATCATCGAAAGACCGGTGCGTGCTTTCGTTTTGTGTT
GTCGTCCAGGTGCAGCGCTTGCTCCTGCTCGAAGAGAGAAGGGTCTGA back to top
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