mRNA_H-canaliculatus_F_contig100.27.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI) HSP 1 Score: 207 bits (527), Expect = 5.810e-67 Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 1 Query: 145 MADDEQAATEAQESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 456
MADDEQAA+EAQESVTERKIE+LIAEIPE+LQQKAKRRVCLAMDKY+IEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct: 1 MADDEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA) HSP 1 Score: 103 bits (258), Expect = 4.730e-26 Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 196 RKIEILIAEIPE----DLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 456
RK+ IL AE PE DLQ+ A R+V ++ K+ I KD+AT+VK+HFDE+ G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct: 15 RKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.160e-25 Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 1 Query: 220 EIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 456
+IPE++ +KA + AMD++ IEKDIAT +K FD++ G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct: 20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 8.360e-23 Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1 Query: 193 ERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 429
ER + +L AE+PEDL+ KA A+D +E+EKD+A VKK FDE G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct: 10 ERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.500e-22 Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 220 EIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 417
+IPE LQ+KA RV + + + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct: 10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7S2CC43_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 8.150e-22 Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 145 MADDEQAATEAQESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
MADD ++ V+ RK+ + P ++ + A ++ A+DK+ IEKD+AT VK FD++ G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct: 1 MADDSDEEEVGKKKVSTRKVHLHQVLAPNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: H3BFR6_LATCH (Dynein light chain n=6 Tax=Eukaryota TaxID=2759 RepID=H3BFR6_LATCH) HSP 1 Score: 89.4 bits (220), Expect = 3.410e-20 Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 178 QESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
Q +++ERK I A++PED+QQ A A++KY IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S
Sbjct: 24 QANMSERKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 114
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A448WG77_9PLAT (Dynein light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT) HSP 1 Score: 88.2 bits (217), Expect = 4.990e-20 Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 196 RKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
RK I A++PED+Q +A R AMDKY IEKDIA +KK FD+ +WHC+ GR+FG VTHETKH +F Q+ VLLF S
Sbjct: 6 RKAVIKNADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: UPI001B88DF89 (dynein light chain 2, cytoplasmic-like isoform X2 n=3 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88DF89) HSP 1 Score: 89.0 bits (219), Expect = 7.600e-20 Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 184 SVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
++TERK + A++ ED+QQ+A AM+KY IEKDIA +KK FD++ +WHCV GR+FG VTHETKH +F Q+ VLLF S
Sbjct: 43 NMTERKAVVKNADMNEDMQQEAVDCATQAMEKYNIEKDIAAFIKKEFDKKYNPTWHCVVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 131
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Match: A0A7J6CV12_9TELE (Dynein light chain n=2 Tax=Cyprinoidei TaxID=30727 RepID=A0A7J6CV12_9TELE) HSP 1 Score: 89.0 bits (219), Expect = 8.670e-20 Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1 Query: 157 EQAATEAQESVTERKIEILIAEIPEDLQQKAKRRVCLAMDKYEIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 450
+Q TE + S+++RK I A++ E++QQ A A++KY IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S
Sbjct: 39 QQICTEIRSSMSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 136 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig100.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig100.27.1 >prot_H-canaliculatus_F_contig100.27.1 ID=prot_H-canaliculatus_F_contig100.27.1|Name=mRNA_H-canaliculatus_F_contig100.27.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp EFWRIEQSGGLREDTATRKWSKNTCAENIRDREAKRVRRLELTRYTQAMAback to top mRNA from alignment at H-canaliculatus_F_contig100:42833..44376+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig100.27.1 ID=mRNA_H-canaliculatus_F_contig100.27.1|Name=mRNA_H-canaliculatus_F_contig100.27.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1544bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:42833..44376+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig100:42833..44376+ >mRNA_H-canaliculatus_F_contig100.27.1 ID=mRNA_H-canaliculatus_F_contig100.27.1|Name=mRNA_H-canaliculatus_F_contig100.27.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:42833..44376+ (Hapterophycus canaliculatus Oshoro5f female)back to top |