mRNA_H-canaliculatus_F_contig10.17.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10.17.1 vs. uniprot
Match: D7G539_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G539_ECTSI) HSP 1 Score: 207 bits (527), Expect = 5.210e-57 Identity = 124/240 (51.67%), Postives = 143/240 (59.58%), Query Frame = 1 Query: 2530 LWRDSGFGRVTELILEGLPQGIAEACQPMMEGFQRQLSIALGCNAAGEMSLMIDQPCRKQVIMRDALMGLGTMAILCGDDCGGCVFYERAAQCCRSLGDWIGMANALAAKARLYMATGCLAEAGRGFELVLKLAYELNDDILAASAHSFQGWVMASQKDVEEALSHFRQCRNLSFRNQDDSAAAASELGIAHMHLRRATTSQGGDDHGGVYSNARQTGIAPALEIASHMELVAARRHYMR 3249
LWR+SG GRVTEL EG+ G+ E C+P+ E +RQL+IA+ C + E S + RKQVI RDALMGLGTMA LCGDD G YERA QCCR+ GDWIG+A+ALAAKA L A G EA GF+LVLKLA EL DD LAASAHS GW MAS+ IAHMH+R A G D V + QT PALE++SH ELV ARRHY R
Sbjct: 7 LWRESGVGRVTELTAEGVLHGMGETCRPVTEYLRRQLAIAMACESTEESSP--PKSPRKQVIARDALMGLGTMATLCGDDRGARDLYERAVQCCRASGDWIGLAHALAAKAHLQAAAGRFEEAVGGFKLVLKLACELRDDALAASAHSCLGWAMASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCIAHMHVRLAIVLSGDGDQA-VCHDTPQTDPNPALELSSHAELVGARRHYSR 243
BLAST of mRNA_H-canaliculatus_F_contig10.17.1 vs. uniprot
Match: D7G540_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G540_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.730e-18 Identity = 67/146 (45.89%), Postives = 88/146 (60.27%), Query Frame = 1 Query: 1 KAKAHQLQVTDTIVRILGRIRPEEPRPIAEPSQL-STSGELAEEDVNVDADVDDVEEGDGNEVVSASDTSSDAWTGGTGVVH---SPILKPEDYTTLPSTHPAQQLLKTGKGLVRLKRPEQAVVVWSQAAEIFRSVIKVDPRQSLT 426
KAKA QL++++T+VRILG+I P+ P P+Q TSG AE+ V VD +D NEV S+S +P + P+D+TTL S HP+QQLLK GK L+R KRPEQAVVVW QAAEI R+ I+ + + T
Sbjct: 205 KAKAQQLRISNTVVRILGQIHPDNV-PSRPPTQRPDTSGASAEDRVEVDGTKEDE-----NEVASSSSXXXXXXXXXXXXXXXXPAPTVTPDDFTTLASDHPSQQLLKAGKELMRQKRPEQAVVVWGQAAEILRNTIEDSSKPATT 344 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10.17.1 >prot_H-canaliculatus_F_contig10.17.1 ID=prot_H-canaliculatus_F_contig10.17.1|Name=mRNA_H-canaliculatus_F_contig10.17.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1157bp KAKAHQLQVTDTIVRILGRIRPEEPRPIAEPSQLSTSGELAEEDVNVDADback to top mRNA from alignment at H-canaliculatus_F_contig10:40105..49767+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10.17.1 ID=mRNA_H-canaliculatus_F_contig10.17.1|Name=mRNA_H-canaliculatus_F_contig10.17.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9663bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:40105..49767+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10:40105..49767+ >mRNA_H-canaliculatus_F_contig10.17.1 ID=mRNA_H-canaliculatus_F_contig10.17.1|Name=mRNA_H-canaliculatus_F_contig10.17.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:40105..49767+ (Hapterophycus canaliculatus Oshoro5f female)back to top |