Homology
BLAST of mRNA_H-canaliculatus_F_contig10.13.1 vs. uniprot
Match: D7FQZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ0_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 2.260e-6 Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 Query: 202 RAEDFSGANLAALLREAGLDVLQDLEICKLVVGSGAYTDK 321
+AE FSGA+LAALLREAGLDVL+ L+ +L+VG GAYT+K
Sbjct: 861 KAEGFSGADLAALLREAGLDVLRQLKSRELIVGKGAYTEK 900
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 629 |
| Cds size | 354 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928625.2289445-CDS-H-canaliculatus_F_contig10:16253..16457 | 1622928625.2289445-CDS-H-canaliculatus_F_contig10:16253..16457 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 16254..16457 + |
| 1696845498.7110336-CDS-H-canaliculatus_F_contig10:16253..16457 | 1696845498.7110336-CDS-H-canaliculatus_F_contig10:16253..16457 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 16254..16457 + |
| 1622928625.2456243-CDS-H-canaliculatus_F_contig10:16653..16803 | 1622928625.2456243-CDS-H-canaliculatus_F_contig10:16653..16803 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 16654..16803 + |
| 1696845498.7275534-CDS-H-canaliculatus_F_contig10:16653..16803 | 1696845498.7275534-CDS-H-canaliculatus_F_contig10:16653..16803 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 16654..16803 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928625.2604475-UTR-H-canaliculatus_F_contig10:16803..17076 | 1622928625.2604475-UTR-H-canaliculatus_F_contig10:16803..17076 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 16804..17076 + |
| 1696845498.7448382-UTR-H-canaliculatus_F_contig10:16803..17076 | 1696845498.7448382-UTR-H-canaliculatus_F_contig10:16803..17076 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 16804..17076 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10.13.1 >prot_H-canaliculatus_F_contig10.13.1 ID=prot_H-canaliculatus_F_contig10.13.1|Name=mRNA_H-canaliculatus_F_contig10.13.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
GAVRYHFSGIRRRPRSDRQKLGGDYHRLVRRRNTFCVLRPPIKSPQGGAT
LFALQRAPPLPRQQEGSRAEDFSGANLAALLREAGLDVLQDLEICKLVVG
SGAYTDKAEKRVAELPT* back to topmRNA from alignment at H-canaliculatus_F_contig10:16254..17076+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10.13.1 ID=mRNA_H-canaliculatus_F_contig10.13.1|Name=mRNA_H-canaliculatus_F_contig10.13.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=823bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:16254..17076+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGCTGTCCGCTACCATTTCTCTGGGATCAGACGTCGACCTCGAAGTGA
TCGACAGAAGTTGGGAGGTGACTACCATCGTCTCGTTCGACGTCGAAACA
CGTTTTGCGTCCTCCGACCTCCCATCAAAAGCCCCCAAGGTGGCGCAACA
CTTTTTGCGTTGCAACGAGCCCCACCTTTGCCGCGGCAGCAGGAGGGTTC
TCGAGTGAGTCAGTGTTTGTTGAAGACACAAGGCTTACACGCACGCCGAT
TGCGCCTTATGAGGTGGAGTGGACCAAATCAGCCGCAGAATGCGCACGCA
CGCTCTCTATGAAAACTGCTGTCTTTTTCGCTTGACACATGTTTGGACAA
CCAAGCAAAATCCAAGCCTGGCTGACGGGCGGCAATTGGTTTCCATGCAG
GCGGAGGACTTCAGCGGAGCGAACTTGGCGGCTCTGTTGCGGGAGGCCGG
GCTGGACGTTCTGCAGGACCTCGAGATCTGCAAGTTGGTCGTGGGCAGCG
GCGCTTACACAGACAAGGCTGAGAAGCGAGTGGCGGAGTTGCCCACATAG
TTCGTCCTCGTGAAGAAAAAGAGTATATTGCACGAAAACAAAAAAGTGTC
GTAACGCGAAGGTGGCCTACCTTTTTTCTTCTTGGAGCAACCAGAGTTCG
TACATGGAGAAAATTGTTGAGAAGGACCTGAGACAGTCTTCTATCAGGGA
TATCGCATACCTGCGACGTCGCTCGCTCCCCCCTGTCTCCTCCCAGTCAC
TCAAGTAAGGGGTGCTACAGAGGGTAGCTCGCGTGCTGTGCCTCGCACCT
TCGAATCCCCGGACGCCTCACAC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10:16254..17076+ >mRNA_H-canaliculatus_F_contig10.13.1 ID=mRNA_H-canaliculatus_F_contig10.13.1|Name=mRNA_H-canaliculatus_F_contig10.13.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:16254..17076+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGCTGTCCGCTACCATTTCTCTGGGATCAGACGTCGACCTCGAAGTGA
TCGACAGAAGTTGGGAGGTGACTACCATCGTCTCGTTCGACGTCGAAACA
CGTTTTGCGTCCTCCGACCTCCCATCAAAAGCCCCCAAGGTGGCGCAACA
CTTTTTGCGTTGCAACGAGCCCCACCTTTGCCGCGGCAGCAGGAGGGTTC
TCGAGGTGCTGTCCGCTACCATTTCTCTGGGATCAGACGTCGACCTCGAA
GTGATCGACAGAAGTTGGGAGGTGACTACCATCGTCTCGTTCGACGTCGA
AACACGTTTTGCGTCCTCCGACCTCCCATCAAAAGCCCCCAAGGTGGCGC
AACACTTTTTGCGTTGCAACGAGCCCCACCTTTGCCGCGGCAGCAGGAGG
GTTCTCGAGCGGAGGACTTCAGCGGAGCGAACTTGGCGGCTCTGTTGCGG
GAGGCCGGGCTGGACGTTCTGCAGGACCTCGAGATCTGCAAGTTGGTCGT
GGGCAGCGGCGCTTACACAGACAAGGCTGAGAAGCGAGTGGCGGAGTTGC
CCACATAGGCGGAGGACTTCAGCGGAGCGAACTTGGCGGCTCTGTTGCGG
GAGGCCGGGCTGGACGTTCTGCAGGACCTCGAGATCTGCAAGTTGGTCGT
GGGCAGCGGCGCTTACACAGACAAGGCTGAGAAGCGAGTGGCGGAGTTGC
CCACATAG back to top
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