mRNA_H-canaliculatus_F_contig10.11.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10.11.1 vs. uniprot
Match: D8LU30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU30_ECTSI) HSP 1 Score: 545 bits (1404), Expect = 6.260e-182 Identity = 407/676 (60.21%), Postives = 454/676 (67.16%), Query Frame = 1 Query: 7 LAEALVGRGGGAGSSSKLGKAASY-GLD----EKARQDQAVGVFPPLEEKHNSPLLLAERDDHSGGGDGRASIADAGAGIAVTAQQPAA-LAPFHSAAADAEXXXXXXXXXXPPDSSSQSPGRVEAGADVGA-AVLAEAALMPTAADSANAASEGGRVGCLPGGGVFAQWRRRXXXXXRRDSFSSEAXXXXXXXXXXXXXXXXXXXXXXXGIDXXXXXXTGKNYWRSSSRNSSCSNXXXXXXXXXGGLSVGKAGSRESSGISSSLSKKVAGESSKPKA--LTLEEAETLTTSNWGGGGANGSARDIWKELVHVGGGXXXXXXXXXXXXXXXVALGSS-GPAVRLRLRFIPLWDCLSDGGGVNGLGALHAAARDGDARLVTSLVHLWQSLSPGSQVLSLPCRRGLTPIQHCIEAGQGSALRDLLRGIARESLRGGGKEGEDTPLHTAIKAGEEGMLRMLLAQTRRTEMPSRVLNALRLGLGAPPSTMVDSVGSDGLTPLALAAICGNETMVKCLLEEGANAAWVDVRGXXXXXXXXXXXXXXXXXXXLKAKATGSTGSGVPGLRRSRLARMACAPCKTNEEGMGPVALAAASGSAQVVSELLRADIPYRTRDRDGRTPLHLAARNGHIPVLRVLVAEMRKSRDKRGPRAG----GGDGADGTPPGDNTLMMDGGPFK 1992
LAEALVGRGGG+G+S + +A+ GL V P EEK+ SP L ER + + +S+ D G A A +P +AP HSA D S+Q EA AD G A A+A P++ A + GCLPGGGVF WRR XXXXX XXXXXXXXXXXXXXXXXXXXXXX XXXXXX XXXXXXXXX GKA ++++ KK +KP A LTLEE E L T++WG G ANGSARDIWKEL HVGG XXXXXXXXXXXXX GS GPAVRLRLRFIPLWDCL+DG G+NGLGALHAAARDGDARLV SL LWQ LSPGSQVLSLPCRRGLTPIQHCIEAG+ +ALR+LLRGIAR+S+RGGG EG+D+PLHTA+KAGEEGML+MLLAQ+RR E+PSRVLNALR GL PP+TMVDS+GSDGLTPLALAAI GNE+MV+CLLEEGANAA VD RG LKAK+TG TGSGV GL RSRLARMACAPCKTNE+GMGP+ALAAASGSAQVVSEL+RADIPYRTRDRD H+PVLRVLV EMRK +K G GGDG D PPGDNTLMMDGGPFK
Sbjct: 33 LAEALVGRGGGSGASCRQERASXXXGLKGTXXXXXXXXXXXXVLFPKEEKNQSPTLPPERHEDN------SSVLDEGDADADAAGRPRLDVAPSHSATGDEGAII-----------SAQ-----EASADAGTGADAADAVPGPSSTAGATTGTPEESAGCLPGGGVFGSWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGKA-------VAAAAGKKA----NKPAATALTLEEVEMLATNDWGEGYANGSARDIWKELTHVGG---XXXXXXXXXXXXXXXXGSRLGPAVRLRLRFIPLWDCLADGAGMNGLGALHAAARDGDARLVASLARLWQKLSPGSQVLSLPCRRGLTPIQHCIEAGKENALRELLRGIARDSVRGGGPEGKDSPLHTAVKAGEEGMLKMLLAQSRRNEIPSRVLNALRFGLATPPNTMVDSLGSDGLTPLALAAIYGNESMVRCLLEEGANAALVDARGMTPIAHASRGGHLLAVRALLKAKSTGGTGSGVAGLSRSRLARMACAPCKTNEDGMGPIALAAASGSAQVVSELVRADIPYRTRDRDXXXXXXXXXXXXHVPVLRVLVEEMRKDNNKGGTXXXXXXXGGDGKDVLPPGDNTLMMDGGPFK 672
BLAST of mRNA_H-canaliculatus_F_contig10.11.1 vs. uniprot
Match: A0A6H5KTK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK8_9PHAE) HSP 1 Score: 159 bits (401), Expect = 7.490e-38 Identity = 190/381 (49.87%), Postives = 212/381 (55.64%), Query Frame = 1 Query: 1 ARLAEALVGRGGGAGSSSKLGKAASY-GLDEKA----RQDQAVGVFPPLEEKHNSPLLLAER-DDHSGGGDGRASIADAGAGIAVTAQQPAA-LAPFHSAAADAEXXXXXXXXXXPPDSSSQSPGRVEAGADVGAAVLAEAALMPTAADSANAASEGGRVGCLPGGGVFAQWRRRXXXXXRRDSFSSEAXXXXXXXXXXXXXXXXXXXXXXXGIDXXXXXXTGKNYWRSSSRNSSCSNXXXXXXXXXGGLSVGKAGSRESSGISSSLSKKVAGESSKPKALTLEEAETLTTSNWGGGGANGSARDIWKELVHVGGGXXXXXXXXXXXXXXXVALGSS--GPAVRLRLRFIPLWDCLSDGGGVNGLGALHAAARDGDARLVT 1116
ARLAEALVGR GG+G+S + +A+S GL A R QA V P EEK+ SP L ER +D+S S+ D G A A +P LAP SAA + + SP A A GA A+A P++ S + GCLPGGGVF WRRR RR XXX XXXXXXXXXXXXXXXXXG + +G R XXXXXXXXX +K A ALTLEE E L TS+WGGG ANGSARDIWKEL HVGG XXXXXXXXXXXXX G S GPAVRLRLRFIPLWDCL+DGGGVNGLGALHAAARDGDARLV+
Sbjct: 231 ARLAEALVGRVGGSGASCRQERASSSSGLKGTAAAGGRPTQAAAVLFPKEEKNQSPTLPPERYEDNS-------SVRDEGDADANAAGRPRLDLAPSDSAAGG--------------EGAIISPQEASADAGTGADA-ADAVPGPSSTASXXXXTPEESAGCLPGGGVFGSWRRR-----RRGXXXXXXXXXGLAXXXXXXXXXXXXXXXXXGPEKMSNNSSGSKSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRANKPAA------TALTLEEVEMLATSDWGGGYANGSARDIWKELTHVGG---XXXXXXXXXXXXXTGAGGSRLGPAVRLRLRFIPLWDCLADGGGVNGLGALHAAARDGDARLVS 575
BLAST of mRNA_H-canaliculatus_F_contig10.11.1 vs. uniprot
Match: A0A835YV06_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV06_9STRA) HSP 1 Score: 116 bits (291), Expect = 6.620e-24 Identity = 100/327 (30.58%), Postives = 140/327 (42.81%), Query Frame = 1 Query: 985 SSGPAVRLRLRFIPLWDCLS----------------------DGGGVNGLGALHAAARDGDARLVTSLVHLWQSLSPGSQVLSLPCRRGLTPIQHCIEAGQGSALRDLLRGIARESLRGGGKEGEDTPLHTAIKAGEEGMLRMLLAQTRRTEMPSRVLNALRLGLGAPPSTMVDSVGSDGLTPLALAAICGNETMVKCLLEEGANAAWVDVRGXXXXXXXXXXXXXXXXXXXLKAKATGSTGSGVPGL--RRSRLARMACAPCKTNEEGMGPVAL--AAASGSAQVVSELLRADIPYRTRDRDGRTPLHLAARNGHIPVLRVLVAEM 1887
S PAVRLRLRFIPL DC+S G N A+H AA GD RLV +LV + +++PG +VLSL GLT + H I G +R LL+ + G + G D+P H A+ A E +L + A ++ E RL E + G ++ V G + + T S VPG RRS LA MAC PC T ++ +G AL AAA+G +VV L+ +P++ RD RTPLH+AA G + V+ +L+ ++
Sbjct: 86 SVAPAVRLRLRFIPLRDCVSAVQSDAPAHHAPIVIGPSLSQSQQGATN---AIHRAAMAGDVRLVMALVAMLDAVAPGGKVLSLRSGEGLTALDHLIRGGHVGPVRTLLKTYGHLCMEGV-ESGHDSPFHNAVTAAEPAVLPHIAATAKQYER--------RL-----------------------------ERHIDMFAAWGGGSSTSHVTGLPQRSPIVGHLDCTRELLAVTREVASYTSSLVPGSMHRRSYLATMACNPCAT-DKALGRPALMHAAANGHTRVVEALIWKGVPFKVRDASSRTPLHVAAEAGWLDVVTLLILQL 370
BLAST of mRNA_H-canaliculatus_F_contig10.11.1 vs. uniprot
Match: A0A835ZIX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIX4_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.730e-23 Identity = 100/327 (30.58%), Postives = 140/327 (42.81%), Query Frame = 1 Query: 985 SSGPAVRLRLRFIPLWDCLS----------------------DGGGVNGLGALHAAARDGDARLVTSLVHLWQSLSPGSQVLSLPCRRGLTPIQHCIEAGQGSALRDLLRGIARESLRGGGKEGEDTPLHTAIKAGEEGMLRMLLAQTRRTEMPSRVLNALRLGLGAPPSTMVDSVGSDGLTPLALAAICGNETMVKCLLEEGANAAWVDVRGXXXXXXXXXXXXXXXXXXXLKAKATGSTGSGVPGL--RRSRLARMACAPCKTNEEGMGPVAL--AAASGSAQVVSELLRADIPYRTRDRDGRTPLHLAARNGHIPVLRVLVAEM 1887
S PAVRLRLRFIPL DC+S G N A+H AA GD RLV +LV + +++PG +VLSL GLT + H I G +R LL+ + G + G D+P H A+ A E +L + A ++ E RL E + G ++ V G + + T S VPG RRS LA MAC PC T ++ +G AL AAA+G +VV L+ +P++ RD RTPLH+AA G + V+ +L+ ++
Sbjct: 251 SVAPAVRLRLRFIPLRDCVSAVQSDAPAHHAPIVIGPSLSQSQQGATN---AIHRAAMAGDVRLVMALVAMLDAVAPGGKVLSLRSGEGLTALDHLIRGGHVGPVRTLLKTYGHLCMEGV-ESGHDSPFHNAVTAAEPAVLPHIAATAKQYER--------RL-----------------------------ERHIDMFAAWGGGSSTSHVTGLPQRSPIVGHLDCTRELLAVTREVASYTSSLVPGSMHRRSYLATMACNPCAT-DKALGRPALMHAAANGHTRVVEALIWKGVPFKVRDASSRTPLHVAAEAGWLDVVTLLILQL 535 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10.11.1 >prot_H-canaliculatus_F_contig10.11.1 ID=prot_H-canaliculatus_F_contig10.11.1|Name=mRNA_H-canaliculatus_F_contig10.11.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=665bp ARLAEALVGRGGGAGSSSKLGKAASYGLDEKARQDQAVGVFPPLEEKHNSback to top mRNA from alignment at H-canaliculatus_F_contig10:452..7150- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10.11.1 ID=mRNA_H-canaliculatus_F_contig10.11.1|Name=mRNA_H-canaliculatus_F_contig10.11.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6699bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:452..7150- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10:452..7150- >mRNA_H-canaliculatus_F_contig10.11.1 ID=mRNA_H-canaliculatus_F_contig10.11.1|Name=mRNA_H-canaliculatus_F_contig10.11.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:452..7150- (Hapterophycus canaliculatus Oshoro5f female)back to top |