mRNA_H-canaliculatus_F_contig1.5.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1.5.1
Unique NamemRNA_H-canaliculatus_F_contig1.5.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: D8LQK8_ECTSI (Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQK8_ECTSI)

HSP 1 Score: 426 bits (1095), Expect = 1.270e-143
Identity = 199/234 (85.04%), Postives = 212/234 (90.60%), Query Frame = 3 
Query:  312 SSTSPPDLANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            SS++PPDLANLRE+YVS GID   LP EPHILM KWVEEAC CKEVIEPNAMCL+TVGEGGKPSARFVLMKGYDERGVTWYTNY SRKS ELKAFPHAAITFWWGALHRSVRFEGEV  VSEEESD YF+CRPTGSKIGAWVSDQSEPIASREEM  KAKE+E+AFASEGDN+PRPPHWGGFRL+P+RVEFWEGQPSRLHDRF+YSLAS++    G GGEDA A  WTITRLQP
Sbjct:   24 SSSAPPDLANLREHYVSTGIDRATLPSEPHILMVKWVEEACRCKEVIEPNAMCLATVGEGGKPSARFVLMKGYDERGVTWYTNYNSRKSQELKAFPHAAITFWWGALHRSVRFEGEVAMVSEEESDTYFNCRPTGSKIGAWVSDQSEPIASREEMTLKAKEVEDAFASEGDNIPRPPHWGGFRLKPSRVEFWEGQPSRLHDRFMYSLASDD--ADGAGGEDAKAMPWTITRLQP 255
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BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: A0A0G4EI35_VITBC (Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EI35_VITBC)

HSP 1 Score: 246 bits (627), Expect = 2.480e-73
Identity = 120/227 (52.86%), Postives = 155/227 (68.28%), Query Frame = 3 
Query:  333 LANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            ++ LR+ Y   G+DE ++P +P  L  +W E+A +    +EPNAMCLST  + G+PSARFVL+KGYDERG  +YTNY SRK  EL   P A++TFWW AL RS+R EG V +V  EESD YF+ RP  S++GA  SDQS PIASRE + AK  E+E  +    + VPRP HWGGFRL P+R+EFW+G+ SRLHDR VY+      +G+GEGG +     W I R+QP
Sbjct:   56 ISALRKEYSMKGLDEASMPADPLTLFGEWFEDAKTVS--VEPNAMCLSTASKEGRPSARFVLLKGYDERGFVFYTNYESRKGKELTENPFASLTFWWEALERSIRIEGRVQQVPPEESDAYFTSRPKASRLGAIASDQSRPIASREALEAKWSELEGRYEGTAE-VPRPLHWGGFRLVPSRIEFWKGRESRLHDRLVYTRG----EGEGEGGGE-----WRIERMQP 270
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: A0A7S2XW57_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW57_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.350e-71
Identity = 121/229 (52.84%), Postives = 151/229 (65.94%), Query Frame = 3 
Query:  333 LANLRENYVS-AGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGE-GGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            LA+ RE Y    G+DE+ +   P+ L  +W ++A + K V+EPNAMCLST     G+PS+R+VL+KG+DERG  WYTNY SRK  EL A P A++ FWWG LHRSVR EG+V +VS EESDEYF  RP GS++GA VS QS P+ SR E+ AK +E+ EA      +V RPPHWGGFRL   RVEFW G+ SRLHDR VY+              D  +  W+I RLQP
Sbjct:   74 LADFREEYSKDEGLDESMVSSTPYPLFQRWFDDAKNAK-VVEPNAMCLSTTEPTNGRPSSRYVLLKGFDERGWVWYTNYESRKGQELSANPWASLVFWWGDLHRSVRIEGKVEKVSAEESDEYFYSRPVGSQLGAMVSTQSRPVQSRSELEAKFQELTEAAEKNPSSVVRPPHWGGFRLAADRVEFWHGRSSRLHDRLVYTRP------------DFESVTWSIERLQP 289
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: A0A836CLR6_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR6_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.250e-71
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3 
Query:  333 LANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYD-ERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASE--GDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            L +LRE Y +  ++E   P +P  L   W+ +A     + +PNAMCL+T    G+PS+RFVL+KG D + G  +YTNY SRK+ EL+A P AA TFWW  LHRSVR EG V RVS  ESD Y++ RP GS++GAWVSDQS+P+A R+ M AK +E+E  F ++    +VPRPPHWGG+R+ P R+EFW G+PSRLHDR VY+ +SE   G G GG       WT+ RLQP
Sbjct:   13 LPDLREEYRADPLEEGCAPGDPMELFQTWLADATRAG-LQDPNAMCLATATPEGRPSSRFVLLKGCDADGGFVFYTNYGSRKARELEANPFAAATFWWAPLHRSVRVEGAVARVSAAESDTYYASRPRGSRLGAWVSDQSQPVAGRDAMDAKQQEVEARFGADDAAGDVPRPPHWGGYRVVPDRIEFWGGRPSRLHDRLVYTRSSE---GGGNGG-------WTMQRLQP 231
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BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: A0A4D9D582_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D582_9STRA)

HSP 1 Score: 239 bits (609), Expect = 4.980e-71
Identity = 120/254 (47.24%), Postives = 155/254 (61.02%), Query Frame = 3 
Query:  333 LANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFP----------------------HAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDN-----VPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            +A+LR+ Y ++G+ E  +P EP  +  +W++EA +  +V+EPNAMCLSTV   GKPS RFVL+KG D+RG TW+TNY+SRK H+L   P                       AA+TFWWG L RSVR EG V R+SEE S  YF  RP GS+IGAW S+QS PI SR ++ ++   +   F  E  N     +P+P  WGGFRL P RVEFW+G+ SRLHDR VY+L            ED   +AW +TRLQP
Sbjct:    4 VADLRKEYSASGLVEENMPSEPLSVFRQWLDEAVAA-QVLEPNAMCLSTVSSDGKPSGRFVLLKGLDDRGFTWFTNYQSRKGHDLAGAPVAPALTSSAXXXXXXXXXXXXXFAALTFWWGDLERSVRVEGWVERLSEEASQAYFDSRPRGSRIGAWASEQSRPIGSRYDLESQYASVSARFGGEEGNDSAHPIPKPAQWGGFRLVPERVEFWKGRQSRLHDRLVYTLE-----------EDKVGRAWRLTRLQP 245
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: A0A482SL99_9ARCH (Pyridoxamine 5'-phosphate oxidase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL99_9ARCH)

HSP 1 Score: 237 bits (605), Expect = 2.670e-70
Identity = 121/229 (52.84%), Postives = 149/229 (65.07%), Query Frame = 3 
Query:  333 LANLRENYVSAGIDE--TALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            LA+LR+ Y S G+ E    +   P  L   W+ +A + + VIEPNAMCLST  +  KPSARFVL+KG+DERG  WYTNY SRK  EL   PHAA+TFWWG L RSVR EG+V RVS  ESDEYF+ RP GS+IGAW S+QS  I +R  +  + + + E F  EG  VPRPPHWGGFRL P R+EFW+G+ SRLHDR V+  +               + AW + RLQP
Sbjct:   43 LADLRKEYSSRGLVEENVVISNGPFELFEAWLNDAVAAR-VIEPNAMCLSTCVDN-KPSARFVLLKGFDERGFVWYTNYESRKGQELVDNPHAALTFWWGELERSVRIEGKVERVSSAESDEYFNSRPRGSQIGAWTSNQSRAIENRAILEEQERIVAERFGKEGP-VPRPPHWGGFRLIPHRIEFWKGRASRLHDRLVFERS-------------CLSSAWALERLQP 255
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BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: A0A136P593_9BACT (Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 Tax=Chlorobi bacterium OLB7 TaxID=1619898 RepID=A0A136P593_9BACT)

HSP 1 Score: 235 bits (599), Expect = 7.710e-70
Identity = 115/228 (50.44%), Postives = 146/228 (64.04%), Query Frame = 3 
Query:  327 PDLANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQ 1010
            P LA++R+ Y +AG+ E  L   P    A W ++A +   V EP  M L+TV   G+PSAR VL+KG+DE G  ++TNY  RK  +L A PHA+++FWW  L R VR EG V +VS  ESDEYF+ RP GSKIGAW S+QS  IA REE+  + +EIE  FA  G  +PRPP WGG+RLRPT +EFW+G+PSRLHDR  Y       + Q EGG      AW I R +
Sbjct:    2 PSLADIRQEYTAAGLAEADLDPNPFAQFAHWFDQAMNAS-VPEPTGMTLATVNNAGQPSARVVLLKGFDEHGFLFFTNYEGRKGEDLAAHPHASLSFWWSQLQRQVRIEGRVEKVSAAESDEYFASRPLGSKIGAWASEQSRVIAGREELEERVREIEARFA--GGEIPRPPFWGGYRLRPTMIEFWQGRPSRLHDRLRY-------RWQEEGG------AWVIERCR 213
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: W7TXG4_9STRA (Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXG4_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.440e-69
Identity = 119/254 (46.85%), Postives = 155/254 (61.02%), Query Frame = 3 
Query:  333 LANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFP----------------------HAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDN-----VPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            +A+LR+ Y ++G+ E  +P EP  +  +W++EA +  +V+EPNAMCLSTV   GKPS RFVL+KG D+RG TW+TNY+SRK H+L   P                       AA+TFWWG L RSVR EG V R+SEE S  YF  RP GS+IGAW S+QS PI SR ++ ++   +   F  E  N     +P+P  WGGFRL P RVEFW+G+ SRLHDR +Y+L            ED A + W +TRLQP
Sbjct:   90 VADLRKEYSASGLVEENMPSEPLSVFRQWLDEAVAA-QVLEPNAMCLSTVSSDGKPSGRFVLLKGLDDRGFTWFTNYQSRKGHDLAGAPVAPAVTSSAAXXXXXXXXXXXXFAALTFWWGDLERSVRVEGWVERLSEEASQAYFDSRPRGSRIGAWASEQSRPIGSRSDLESQYASVSARFGGEEGNDSAHPIPKPAQWGGFRLVPERVEFWKGRQSRLHDRLMYTLE-----------EDKAGRIWKLTRLQP 331
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: PDXH_BURCJ (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=323 Tax=Proteobacteria TaxID=1224 RepID=PDXH_BURCJ)

HSP 1 Score: 230 bits (586), Expect = 4.400e-68
Identity = 112/227 (49.34%), Postives = 145/227 (63.88%), Query Frame = 3 
Query:  333 LANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            LA+LR NY  A +DE     +P     +W +EA + K + EPN M L+TVG  G+PSAR VL+KG DERG  ++TNY SRK H+L   P AA+ F+W  L R VR EG + + S EESD YF+ RP GS+IGAW S+QS  I SR  + A+ K + E +   GDN PRPPHWGG+RL P  +EFW+G+PSRLHDR +Y+             + AA+  WTI+RL P
Sbjct:    4 LADLRINYSRASLDEADAAPDPFAQFDRWFKEALAAK-LPEPNTMTLATVGADGRPSARIVLIKGVDERGFVFFTNYESRKGHDLAVHPQAALLFYWIELERQVRIEGRIEKTSAEESDRYFASRPLGSRIGAWASEQSAVIDSRATLEAREKAVSERY---GDNPPRPPHWGGYRLVPDSIEFWQGRPSRLHDRLLYTR------------DAAASPGWTISRLSP 214
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Match: A0A510HIA5_9ACTN (Pyridoxine/pyridoxamine 5'-phosphate oxidase n=2 Tax=Rubrobacter xylanophilus TaxID=49319 RepID=A0A510HIA5_9ACTN)

HSP 1 Score: 230 bits (586), Expect = 5.530e-68
Identity = 115/228 (50.44%), Postives = 147/228 (64.47%), Query Frame = 3 
Query:  330 DLANLRENYVSAGIDETALPQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDERGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEESDEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPRPPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAKAWTITRLQP 1013
            DLA LR+ Y  AG+ E     +P     +W +EA +   + EPNAM L+T    G+PSAR VL+KG+DERG  +YTNY  RK+ EL+A P AA+ F+WG L R VR EG  TRV+ EESD YF+ RP GS++GAW S QSEP+ASREE+  + +E+E  F  EG  VPRPP WGG+R+RP R+EFW+G+ SRLHDR +Y         +G G        W   RLQP
Sbjct:   12 DLAGLRQEYTRAGLSEADADPDPLRQFGRWFDEALAAG-LHEPNAMILATATSDGRPSARTVLLKGFDERGFVFYTNYGGRKARELEANPRAALLFYWGELERQVRIEGIATRVAREESDAYFASRPRGSQLGAWASRQSEPVASREELERRLREVERRF--EGRPVPRPPFWGGYRVRPERIEFWQGRESRLHDRLLYVR-------EGAG--------WRRVRLQP 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQK8_ECTSI1.270e-14385.04Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus... [more]
A0A0G4EI35_VITBC2.480e-7352.86Pyridoxal 5'-phosphate synthase n=2 Tax=Vitrella b... [more]
A0A7S2XW57_9STRA1.350e-7152.84Pyridoxal 5'-phosphate synthase n=1 Tax=Fibrocapsa... [more]
A0A836CLR6_9STRA2.250e-7152.17Pyridoxal 5'-phosphate synthase n=1 Tax=Tribonema ... [more]
A0A4D9D582_9STRA4.980e-7147.24Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochlor... [more]
A0A482SL99_9ARCH2.670e-7052.84Pyridoxamine 5'-phosphate oxidase n=1 Tax=archaeon... [more]
A0A136P593_9BACT7.710e-7050.44Pyridoxamine 5'-phosphate oxidase (Fragment) n=1 T... [more]
W7TXG4_9STRA1.440e-6946.85Pyridoxal 5'-phosphate synthase n=1 Tax=Nannochlor... [more]
PDXH_BURCJ4.400e-6849.34Pyridoxine/pyridoxamine 5'-phosphate oxidase n=323... [more]
A0A510HIA5_9ACTN5.530e-6850.44Pyridoxine/pyridoxamine 5'-phosphate oxidase n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1contigH-canaliculatus_F_contig1:44048..49453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.1
Seed ortholog evalue1.5e-117
Seed eggNOG ortholog2880.D8LQK8
Preferred namePDX3
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009987,GO:0010181,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032553,GO:0034641,GO:0036094,GO:0042364,GO:0042816,GO:0042818,GO:0042819,GO:0042822,GO:0042823,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.pyridoxamine-phosphate oxidase activity
EggNOG OGsCOG0259@1,KOG2586@2759
EC1.4.3.5
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
Ec32 orthologEc-10_006030.1
Exons6
Model size1899
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1.5.1prot_H-canaliculatus_F_contig1.5.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1 44931..49217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928618.475294-UTR-H-canaliculatus_F_contig1:44047..449301622928618.475294-UTR-H-canaliculatus_F_contig1:44047..44930Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 44048..44930 -
1696845496.5058107-UTR-H-canaliculatus_F_contig1:44047..449301696845496.5058107-UTR-H-canaliculatus_F_contig1:44047..44930Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 44048..44930 -
1622928618.5455132-UTR-H-canaliculatus_F_contig1:49217..494531622928618.5455132-UTR-H-canaliculatus_F_contig1:49217..49453Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 49218..49453 -
1696845496.6018984-UTR-H-canaliculatus_F_contig1:49217..494531696845496.6018984-UTR-H-canaliculatus_F_contig1:49217..49453Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 49218..49453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928618.484794-CDS-H-canaliculatus_F_contig1:44930..450991622928618.484794-CDS-H-canaliculatus_F_contig1:44930..45099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 44931..45099 -
1696845496.5255384-CDS-H-canaliculatus_F_contig1:44930..450991696845496.5255384-CDS-H-canaliculatus_F_contig1:44930..45099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 44931..45099 -
1622928618.4938772-CDS-H-canaliculatus_F_contig1:46320..463671622928618.4938772-CDS-H-canaliculatus_F_contig1:46320..46367Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 46321..46367 -
1696845496.543286-CDS-H-canaliculatus_F_contig1:46320..463671696845496.543286-CDS-H-canaliculatus_F_contig1:46320..46367Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 46321..46367 -
1622928618.5069733-CDS-H-canaliculatus_F_contig1:47113..471911622928618.5069733-CDS-H-canaliculatus_F_contig1:47113..47191Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 47114..47191 -
1696845496.560842-CDS-H-canaliculatus_F_contig1:47113..471911696845496.560842-CDS-H-canaliculatus_F_contig1:47113..47191Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 47114..47191 -
1622928618.5159128-CDS-H-canaliculatus_F_contig1:47483..476371622928618.5159128-CDS-H-canaliculatus_F_contig1:47483..47637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 47484..47637 -
1696845496.576809-CDS-H-canaliculatus_F_contig1:47483..476371696845496.576809-CDS-H-canaliculatus_F_contig1:47483..47637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 47484..47637 -
1622928618.526829-CDS-H-canaliculatus_F_contig1:48160..482821622928618.526829-CDS-H-canaliculatus_F_contig1:48160..48282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 48161..48282 -
1696845496.585434-CDS-H-canaliculatus_F_contig1:48160..482821696845496.585434-CDS-H-canaliculatus_F_contig1:48160..48282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 48161..48282 -
1622928618.5363367-CDS-H-canaliculatus_F_contig1:49007..492171622928618.5363367-CDS-H-canaliculatus_F_contig1:49007..49217Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 49008..49217 -
1696845496.5937278-CDS-H-canaliculatus_F_contig1:49007..492171696845496.5937278-CDS-H-canaliculatus_F_contig1:49007..49217Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 49008..49217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1.5.1

>prot_H-canaliculatus_F_contig1.5.1 ID=prot_H-canaliculatus_F_contig1.5.1|Name=mRNA_H-canaliculatus_F_contig1.5.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=260bp
MSMLTRWTQSLASSAPHSNAAVSKASSTSPPDLANLRENYVSAGIDETAL
PQEPHILMAKWVEEACSCKEVIEPNAMCLSTVGEGGKPSARFVLMKGYDE
RGVTWYTNYRSRKSHELKAFPHAAITFWWGALHRSVRFEGEVTRVSEEES
DEYFSCRPTGSKIGAWVSDQSEPIASREEMAAKAKEIEEAFASEGDNVPR
PPHWGGFRLRPTRVEFWEGQPSRLHDRFVYSLASEENKGQGEGGEDAAAK
AWTITRLQP*
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mRNA from alignment at H-canaliculatus_F_contig1:44048..49453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1.5.1 ID=mRNA_H-canaliculatus_F_contig1.5.1|Name=mRNA_H-canaliculatus_F_contig1.5.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1:44048..49453- (Hapterophycus canaliculatus Oshoro5f female)
GTGTGGCAATGCTATGCTCGCTGCGGATTGGCGTGATGGCCTTCAGGTCG
CTAAGTCCCGGTCGCGCAGGAAAACGAACGACTTTAAGGTGCGGGACAAC
ATGCAACAAACGTGCCCCAGGCCTACTTCCACCGCTTGCGCAGCAGTCGG
ATCGGGTACGTGCGTAGTTACCACTCGGCTTGCAACATAAAGGTGTTGCA
TCTCGGGGTTTCGTTGTACGGGGACACTTACGTGTCATGTCGATGCTCAC
GCGTTGGACCCAATCGCTCGCCTCTTCTGCTCCTCATAGCAATGCTGCTG
TATCGAAGGCTTCTTCAACTTCCCCTCCTGACCTGGCCAACCTCCGCGAG
AACTACGTGTCTGCCGGGATCGACGAGACGGCCCTGCCGCAAGAACCACA
CATTCTCATGGCCAAGTGGGTGGAGGAGGCTTGCAGCTGCAAGGAGGTCA
GTAATAGTATGAGCCGTCCGTTGCGCGAACCCCCTTGGAGTTTTCGATCT
TACCAGGTCGTGACTCATCACGCTCCACACGGACGTTTCTTCAGGCAGCC
GTCCGAAGCCCGTTGTTCCGTGTGTCAGGTGTTTGGTTTAGTTTACAGCA
GTAGATCGTGGAACGAGACGCAGGTCGTGGATCAAGGGGCCCACTTTCCC
AGAGTCCGGCTGTTGAACAGCAGGACGCTTGCGTGCATTTGGATCCCCTC
CAACTACGTACCTGGTAGAATAAATCCATTCAGTTGATGCCCCCCGGGAT
GACTACTGCTGTAAGCCGAAGAAATGCTTCGTCTCTCGTCCTACACATGT
TACCAACTCGAACGAAGCACGCCTCTAACTGTAAAACGTTTCTCCCTGGA
GTACTTGTGTCACCCAAACCACTGTCCTCGCTGCCGTGCCTGTCAGTGCT
GCTCGCACGGCGAGTGAGGCTCCTGGTGAAGTGTCCGATTTCGATGGGCG
TGGCGTGCGCACCTCCTGCTCGCAGCGTAGCGTGACGTCACTTGTCATGG
CCCTTCGCCATGGGAGAGCCTGAATTTCCACCAATGGAGATGCCGGCTCT
TGCTTCTCTTTGCCATCCATTGTGTAATTTCGTATCGAAAAAGCTGGCCA
AAAACGCTTTCTTGAAAACATTGCTTGTTCTTGGCGAATCCTCGAAATAT
TTGGCGCATCCATGCACGCAGGTAATCGAGCCGAACGCCATGTGCCTCTC
GACCGTGGGGGAGGGAGGGAAGCCCTCGGCTAGGTTCGTGCTGATGAAGG
GCTACGACGAGAGGGGTGTCACGTGGTACACCAACTATAGAAGGTGCGTC
TTGGGTTGTCGTATGCGCGACACAAACGCTGAGATACGAAGGATGCTGCT
TGTCCATTGAAAGCTTCCACTGCCTTCGCCAATGCGATGGAGACCAGAAG
TCGTCCAGGGAATGAATGCACTTGTATGATACTGCTGTGTAGCGTCTCAA
AGCTGAGTGACACGCTCGAGCTTCCAGCACATGAAACGGCTCTCACGGCA
TCGTGTGAGAGATGAGCTAAGTCAAAAGTGCGTATGAAACACAGCGATGA
GTCCTTTGAAATCGCGTACCCGCCGAGGGCAGGGGATCGACTGGAAAAAA
CACCAAAGGCGACGTATCGACTGGACCACAAACATATGATAGGTTTGGTG
GCGTGGTACGGAGCGTTGCATCGTGAGACACCCGTGAGATCGGATTGTGC
TGCCTGTCTGCCTGTCCGCCTGCCCGCCTGCCCGCCTGAATGCCTGCGTT
GCCTCTCCCACCCTGCCGTGTACGTTCGTCCGGGCCGTCCGGAATTCATA
TCCTCAACCAATACAGCCGTAAATCCCACGAGCTGAAGGCGTTTCCGCAC
GCGGCTATCACGTTCTGGTGGGGGGCTCTCCACCGCTCGGTCCGGTTCGA
GGGGGAGGTTACTAGGGTGAGCGAAGAGGAGAGCGACGAGTACTTCAGCT
GCCGTCCTACGGGAAGCAAGGTAAGCTTTCAAGCCCGGTACAGGGGCAAG
AACAGATTCTATATTTGTCCAGGCCACGGTAGCGTCCACCTCACCGACAC
ATAGCTAGGTGTAAGGTGCCTTAAAGGGTTTCCCAGCGGGGTCGAACACG
AGGCGAACGAGAGCTGATCGAATAGGGGACCCTCGACTGCTCATCCAGGA
GCTCGAACGTTTAACCATTTTGTCGAATTGTTGCCGCTCCCGCTCCCGCT
ACCGCTGCCGCTGCCGCTGCCTATACCGTTGCGTCACGTCTGTTCGCGAA
AATGAATCGAAGATCGGCGCCTGGGTGTCGGACCAAAGCGAGCCTATCGC
ATCCCGCGAGGAGATGGCGGCGAAGGCGAAAGAGATTGAGGTCAGCTACG
TGGAGATCCGCTCTTGCAAGTTTGACACTGTCTTGGCGCGCAGGCATCCT
TAAGAGGGCACTGCTGGTGTAGATGCTCGAACGTGGAGTAGTGTCCAGGT
TGCGGCTCTGGTAACGCTTATGTCAGACCCTCCTCCCAAGAGTGAGGCTC
TTGCAAGGTTGCACGAGCCCCTTTGCTTGCCATCTTGTTTCCACTTCGTA
CGTATGGCGGCACTTGTGACTCTGAGCTCAGAAGCTTCTGGTCATGGAAG
GACAGGGGGGGTCGACGGAATAAGCAAGTAGGTGACCGGAAAATACGCCG
TGTGACGCGCTATACGACATGGGTACGCTACAAATTTGAAATCAACCATA
ACGAGGGGTTGGCATGTGCGGTTGTTCACCCAAGGAATTCTCCAACGTGC
CGAACGAAATAGCCCAGGTGTCTCCGGGCCCGAGCGCTGTGAACGCAAAG
ACCACGGGAATACGGAGATGGCCCAGTGTTTACCACGAAGCCATTCAGCC
TTTTTTTGTCGAGAACCCACTGCCGTTCAAGCGTTGGACGGAGGCGTGAA
GTGCCAAGACTGTGAACGGGCGTGGGCATTGAACCGTTGATCGCAAGCAG
AGAGGTGAAGCAGTCAGCAGACCGTCAAGTGCCACAACGGTTGGTATTGA
TGTTTGTCCCGAATGTCAAGCGGGCCGGAACGATCGTTGTGATGCCCTTG
TCTGAACAACAAAGCTATAACGTGCGCGACCTGCAGGAAGCTTTTGCCTC
GGAGGGAGACAACGTGCCGCGCCCTCCTCACTGGTGAGAGGATGTTTGCC
TAGATATATACGCATGTGGTATCTCGTCGTTGCGTAGTCCCCGATGGTGC
CGCGTGCTGGTGTAAATCTAGTGCTGTAACTGTCTCGATACAGAAGCTCA
ACCATCTCGGTTTATTTTTTTGCGTTCACGAAAGCATCGTCGCCCGTTTT
GGGATCTTCCGTTCTAAGCGCGTTCCATCGATACACATATAGTCTTCTTG
CTCGATATATCTTTCGGCCAGAATCGCCGTAGTGTGGCTGCTGTGAGAGC
AGTATTTCCGTTCCCGAAGTTCGGAAATTTTGTGTGAAGAGCCGCCCGCT
TCTCTCTACTCTTTCTCGGCCTCTCTGCCCTCCACAGCAGCAGCTTGATT
TTCTCTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCCGAGTAAAAAGTACAAACTTCCTCTCTGTGTCTCTCG
ATCCCTCGCTGAAGGCACCCAGCAGGAATCTCCGTATCTCCATGCATGGG
GCCGCAGCGGAATTCGACGTCAAAATTTGTGGAAACTTTAATTTGATGCA
TCATCTCCGTGTGTTACGATAACCCCGTCACAAGGCTGGCACTTCGAAAG
GGTCATACACCATCAAAAGAAAGGGTCCACATGAAGGGTCAGACTTCTTT
AAAAGAAGGGGTCGGGATCGAAAGGGTCAGCATCTCTCCCACACTTTCTC
TTTCTCTGCTTGCGATGGCGCCCCCCCCCTCTCATCACTCAAAACCTGTC
CCGAATCAGTCTTCGAAGCCTGTTATGTGCACCTCGGTAGTTGGATGGAG
CTGAAATCAATCACGGAAATGTCGACCCTGCTCACGGCACTCGGTATTTT
ACGTGAGATACCCGCGTCTGAACGCTCCCACTTCAAAGAGAGCGTCAGCA
TATCTCTCGCCCTGTTTCTCTTCTATGCTGTCGATGGCAGCCCACCTCTC
TCGTCACCCACTCCTCTTTTTTGCGGCTACACCCGATGCAGTAGCCCATC
ACACTCAATTCCAAGCACGACACGTTCATCATTCCCTTGGAATCGCTAAC
AATTAAGCGGCGCCGCGAAGCGGCTGAAACCTTGTTTTTATACACATCGT
CGACGTTGAAAAACACTGCTGTAACGCGTCTCCCCGTATGACGTCATAGA
CATCAAGCCGCGTCCCACGCTGTTTTGTCGCGTTGTTTTCGTTGGGTGTT
GCAGGGGTGGTTTCCGGCTGCGACCCACGCGCGTGGAGTTCTGGGAGGGG
CAGCCATCTCGCCTTCACGACCGCTTCGTGTACTCCCTTGCGTCGGAGGA
AAACAAGGGGCAAGGAGAGGGGGGTGAAGATGCTGCTGCGAAGGCGTGGA
CGATCACACGGCTGCAGCCATGAACAACCCACCGCTTGCCACCTGACTGC
AAGCGTTTGAAAGGAATGCTTGGCGCTCGTGATGAGGGTCGCCCGAATGT
GTGCGCAGCGCCGGCTTTACCGGAGGAGTGGCAACGTTATGTGCTGTCGG
CGGTTTGGGGTCAAGGAACTAGGTGGGACCCAACCCGCCAGTCAGGCAAA
TTTAAAGTTTTCGTGGTCTTGTCCTGCTACGCATCTTGAGTGTTTTACAA
GCGGTTGTTGACGCTGCAGCGAAGGAACATAGGCGTAATCAGACAAGCAG
CGCAAAATGCAAATGACTTGAAAATGCAAGTCACTTGGTTGGTCCTGGCG
ACGTGTCTTTCAACTCTTCCGTTGGCAAACTGGGCCTTTATAGGGTTTTA
CTGGCGCAAGGATCTTTTATGTTTGTGGTGGTTGCCGTTGTCGTGGGGTC
ACGCGGAAACGATGATCAAAACCAGAATTGCTGGCGCTGCCCGCATACCA
GAACGCGCTTATGTGAGGAGAGGTTTAGGATGAAGGAGAGACAACGACAC
GTGTGAATATATCGAAATAAACGAGTGGTATTTTCGTCGTGTCTGCCAAG
CAGGTAGTGTGCGGACCGTCTAAGCGGACCGTCCACGTGGCCGCCGCGTG
GTAGTGGTGGCCATGTGGGATTGGGCGCTGAAGACATTCCCCCGCCTCTC
GGCCTGCCTTACATGGGCGCACGACCGCACATTCGAAGAAGCGACGGACG
AGGAGGGGGAATGGCGGGCTACGCATCCGTGTTGGCGTGGGACGTCTCGC
ATGATCCTCTAATGGAAAACCATGCCTCCGTGCTCCGTGCAACTTCCACG
CATCAGAGATCAGATCACTAGCGCCCGAATCGGCAGGAGGACCATCTCAA
CCCTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1:44048..49453-

>mRNA_H-canaliculatus_F_contig1.5.1 ID=mRNA_H-canaliculatus_F_contig1.5.1|Name=mRNA_H-canaliculatus_F_contig1.5.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1:44048..49453- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGATGCTCACGCGTTGGACCCAATCGCTCGCCTCTTCTGCTCCTCA
TAGCAATGCTGCTGTATCGAAGGCTTCTTCAACTTCCCCTCCTGACCTGG
CCAACCTCCGCGAGAACTACGTGTCTGCCGGGATCGACGAGACGGCCCTG
CCGCAAGAACCACACATTCTCATGGCCAAGTGGGTGGAGGAGGCTTGCAG
CTGCAAGGAGATGTCGATGCTCACGCGTTGGACCCAATCGCTCGCCTCTT
CTGCTCCTCATAGCAATGCTGCTGTATCGAAGGCTTCTTCAACTTCCCCT
CCTGACCTGGCCAACCTCCGCGAGAACTACGTGTCTGCCGGGATCGACGA
GACGGCCCTGCCGCAAGAACCACACATTCTCATGGCCAAGTGGGTGGAGG
AGGCTTGCAGCTGCAAGGAGGTAATCGAGCCGAACGCCATGTGCCTCTCG
ACCGTGGGGGAGGGAGGGAAGCCCTCGGCTAGGTTCGTGCTGATGAAGGG
CTACGACGAGAGGGGTGTCACGTGGTACACCAACTATAGAAGGTAATCGA
GCCGAACGCCATGTGCCTCTCGACCGTGGGGGAGGGAGGGAAGCCCTCGG
CTAGGTTCGTGCTGATGAAGGGCTACGACGAGAGGGGTGTCACGTGGTAC
ACCAACTATAGAAGCCGTAAATCCCACGAGCTGAAGGCGTTTCCGCACGC
GGCTATCACGTTCTGGTGGGGGGCTCTCCACCGCTCGGTCCGGTTCGAGG
GGGAGGTTACTAGGGTGAGCGAAGAGGAGAGCGACGAGTACTTCAGCTGC
CGTCCTACGGGAAGCAAGCCGTAAATCCCACGAGCTGAAGGCGTTTCCGC
ACGCGGCTATCACGTTCTGGTGGGGGGCTCTCCACCGCTCGGTCCGGTTC
GAGGGGGAGGTTACTAGGGTGAGCGAAGAGGAGAGCGACGAGTACTTCAG
CTGCCGTCCTACGGGAAGCAAGATCGGCGCCTGGGTGTCGGACCAAAGCG
AGCCTATCGCATCCCGCGAGGAGATGGCGGCGAAGGCGAAAGAGATTGAG
ATCGGCGCCTGGGTGTCGGACCAAAGCGAGCCTATCGCATCCCGCGAGGA
GATGGCGGCGAAGGCGAAAGAGATTGAGGAAGCTTTTGCCTCGGAGGGAG
ACAACGTGCCGCGCCCTCCTCACTGGAAGCTTTTGCCTCGGAGGGAGACA
ACGTGCCGCGCCCTCCTCACTGGGGTGGTTTCCGGCTGCGACCCACGCGC
GTGGAGTTCTGGGAGGGGCAGCCATCTCGCCTTCACGACCGCTTCGTGTA
CTCCCTTGCGTCGGAGGAAAACAAGGGGCAAGGAGAGGGGGGTGAAGATG
CTGCTGCGAAGGCGTGGACGATCACACGGCTGCAGCCATGAGGGTGGTTT
CCGGCTGCGACCCACGCGCGTGGAGTTCTGGGAGGGGCAGCCATCTCGCC
TTCACGACCGCTTCGTGTACTCCCTTGCGTCGGAGGAAAACAAGGGGCAA
GGAGAGGGGGGTGAAGATGCTGCTGCGAAGGCGTGGACGATCACACGGCT
GCAGCCATGA
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