mRNA_H-canaliculatus_F_contig1.3.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1.3.1
Unique NamemRNA_H-canaliculatus_F_contig1.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1.3.1 vs. uniprot
Match: A0A6H5KYI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI0_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 4.560e-65
Identity = 193/434 (44.47%), Postives = 231/434 (53.23%), Query Frame = 1 
Query:    1 VCWVVFQVEEAPPGTTPILLTVALYLVEGPRRQRRSRRQPCRSSGRADAQSSADIENSAVSLNRTAKLLRESQPGPNEVHSQRPS-GASRQA--TAVAATPATAAAPKTPASAAGGEYLEGVLTRLAGAAEL-GTDPLIYVRRADVAEVVDVLTDLARSPLGPTVTSPALARLTLLRRSRRRDSAPDGGKRVGSPA-----PGSALHR-RPHSSRCHGNSNGVGRLRSSPASASPSPPRSRATVA--GGRALFQDGDMTPPLRVLTGANPASTRVTFRARSPAG-SPRGDTS--GNGGASPRRVRGAQEXXXXXXXXXXXXXXXXXXXVEAALLSCALSTTPVALGKNKEAPRSAADGPPATRGIDDADMMSPGLANDEKKEPGV--PGLLAAKMPHSVGKDP--TASELKKIRCVPVKGEGTAFDDFWSSGWG 1245
            VCW+  Q+E   PGTT +L T+A+YLV  P ++ R  R P +S    DA SSA+  NSA S    A LL     G  E    + S G  RQA  T+   +   AA P   AS+A G   E  LTRLAGAA   GT+PLIYVRRADVA +VD L D+ R+P GPTVTSPA ARL L+RRS R+D  P GG+R  SP         A HR RP               R +  SASPS  R   T+A  GG+ALFQD +M  P RVL   +PAST++TFR RSP   SP GD    GN     RR+RG  E                   ++      A S TP+AL KN EAP SAA G   T G +         + DEKK+  +  P L+   M       P  TAS+ KKIRCVP KGE + FDDFWSSGWG
Sbjct:   27 VCWLFLQIEGGSPGTTAVLFTLAVYLV--PTKRHRPSRNPPKSFW-PDALSSAENGNSARSCEIAANLLL---TGELEAFLDKSSDGVRRQAPGTSTQESAPAAATPNNTASSARGNPFEEALTRLAGAASTCGTEPLIYVRRADVAVIVDALMDVVRTPAGPTVTSPAFARLNLVRRSGRKD--PRGGRRALSPVRRGERAALAFHRGRPGRGXXXXXXXXXXXXRRA-VSASPSMSRGAPTIAPPGGKALFQDSNMMTPPRVLARPSPASTKITFRPRSPPPPSPSGDGEPVGNSTVGARRIRGGMEGKQHRV-------------LQRVHSPRAFSMTPIALAKNNEAPLSAA-GALVTSGGEGGSQSGVMRSTDEKKQTKLKPPALITTMMQDGCDVTPCSTASDRKKIRCVPAKGEASDFDDFWSSGWG 437
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BLAST of mRNA_H-canaliculatus_F_contig1.3.1 vs. uniprot
Match: D8LQL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL1_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-18
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  301 AAAPKTPASAAGGEYLEGVLTRLAGAAEL-GTDPLIYVRRADVAEVVDVLTDLARSPLGPTVTSPALARLTLLRRSRRRDSAPDGGKRVGSP 573
            AA P   AS+A G   E  LTRLAGAA   GT+PLIYVRRADVA +VD L D+ R+P GPTVTSPA ARL L+RRS R+DS   GG+R  SP
Sbjct:   38 AATPNNTASSAQGNPFEEALTRLAGAASTCGTEPLIYVRRADVAAIVDALMDVVRTPAGPTVTSPAFARLNLVRRSGRKDSR--GGRRALSP 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYI0_9PHAE4.560e-6544.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQL1_ECTSI1.030e-1863.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1contigH-canaliculatus_F_contig1:31204..32745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_006080.1
Exons1
Model size1542
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1.3.1prot_H-canaliculatus_F_contig1.3.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1 31939..32451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928618.2604854-UTR-H-canaliculatus_F_contig1:31203..319381622928618.2604854-UTR-H-canaliculatus_F_contig1:31203..31938Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 31204..31938 +
1696845496.2172832-UTR-H-canaliculatus_F_contig1:31203..319381696845496.2172832-UTR-H-canaliculatus_F_contig1:31203..31938Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 31204..31938 +
1622928618.2830377-UTR-H-canaliculatus_F_contig1:32451..327451622928618.2830377-UTR-H-canaliculatus_F_contig1:32451..32745Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 32452..32745 +
1696845496.2547793-UTR-H-canaliculatus_F_contig1:32451..327451696845496.2547793-UTR-H-canaliculatus_F_contig1:32451..32745Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1 32452..32745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928618.27116-CDS-H-canaliculatus_F_contig1:31938..324511622928618.27116-CDS-H-canaliculatus_F_contig1:31938..32451Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 31939..32451 +
1696845496.2352233-CDS-H-canaliculatus_F_contig1:31938..324511696845496.2352233-CDS-H-canaliculatus_F_contig1:31938..32451Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1 31939..32451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1.3.1

>prot_H-canaliculatus_F_contig1.3.1 ID=prot_H-canaliculatus_F_contig1.3.1|Name=mRNA_H-canaliculatus_F_contig1.3.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
MTPPLRVLTGANPASTRVTFRARSPAGSPRGDTSGNGGASPRRVRGAQEG
RQHRLQQRVRSKSPSSSPVEAALLSCALSTTPVALGKNKEAPRSAADGPP
ATRGIDDADMMSPGLANDEKKEPGVPGLLAAKMPHSVGKDPTASELKKIR
CVPVKGEGTAFDDFWSSGWG*
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mRNA from alignment at H-canaliculatus_F_contig1:31204..32745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1.3.1 ID=mRNA_H-canaliculatus_F_contig1.3.1|Name=mRNA_H-canaliculatus_F_contig1.3.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1542bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1:31204..32745+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTGCTGGGTAGTCTTTCAGGTGGAAGAAGCACCGCCAGGGACTACTCC
TATTCTCTTGACAGTCGCCTTGTACCTTGTCGAGGGACCCCGCAGACAAC
GCCGCTCTAGAAGACAGCCGTGTAGATCTTCAGGGCGAGCAGATGCACAG
TCATCGGCAGATATAGAGAACAGCGCGGTCTCCCTGAATCGCACCGCGAA
ACTGCTTCGCGAAAGTCAGCCCGGGCCCAACGAGGTACATTCTCAGCGAC
CTTCTGGAGCAAGCCGACAGGCTACCGCTGTCGCTGCCACTCCTGCTACC
GCTGCTGCTCCCAAGACTCCGGCCAGCGCTGCGGGAGGGGAGTACCTAGA
GGGTGTGCTGACCAGGTTGGCGGGAGCGGCTGAACTCGGGACCGACCCTC
TAATCTACGTGCGGCGTGCAGACGTTGCGGAGGTCGTGGACGTGCTAACA
GACCTTGCGCGGTCCCCGTTGGGCCCAACCGTAACTTCACCAGCGCTCGC
CCGTCTCACTCTCCTGCGGCGATCCAGGAGGAGAGACTCGGCTCCCGATG
GCGGGAAACGGGTTGGTTCGCCGGCGCCCGGCTCGGCGCTCCATCGGCGA
CCACACTCCTCCCGATGCCACGGCAACAGCAACGGTGTCGGCCGGCTTCG
TTCGTCGCCCGCTAGCGCTTCTCCTTCTCCCCCTCGGTCGAGGGCAACGG
TGGCTGGGGGGCGAGCGCTGTTCCAGGACGGCGATATGACCCCGCCTCTT
CGCGTACTCACGGGCGCGAACCCGGCGTCTACCAGGGTGACCTTCCGCGC
CCGATCCCCCGCTGGAAGCCCGCGGGGGGACACGAGCGGGAACGGAGGTG
CGAGCCCAAGGCGGGTTAGAGGGGCGCAGGAGGGAAGGCAGCACCGTTTG
CAACAGCGCGTGCGCTCCAAATCTCCCTCGTCGTCCCCCGTGGAGGCAGC
TCTGTTGTCGTGCGCTTTGAGCACGACGCCCGTTGCCCTAGGTAAGAACA
AGGAGGCGCCGAGAAGCGCCGCGGACGGCCCGCCGGCCACCCGCGGCATC
GACGACGCCGACATGATGTCTCCAGGCCTGGCCAACGATGAAAAGAAGGA
GCCCGGGGTCCCTGGTCTGCTCGCGGCGAAGATGCCCCACAGCGTTGGCA
AGGACCCGACAGCGAGCGAGCTCAAGAAGATCAGATGCGTCCCCGTGAAG
GGGGAAGGGACGGCGTTTGACGACTTTTGGAGCTCTGGTTGGGGGTAACG
CCAATCCTCGGCAGATGGACTCTGCTTCTTTTTGTTTTGCCATGGGCGAC
AAGCTTCGGCTCGGTGCACGTTGTCTGGAGGGCTGTTGCCGGGGTGCGCC
TGGCCACGGCGGACAGTGTGGTTGCACGCGAGTCATGGGGTTCACACATT
TCTATGACACTTCGGTAGAAGGAAGAGCGGAGGTGCCCAGCCGCAAGCAG
CAACCTTTAGTAGTGCGCACAGCCGCCTGGCATGTGCACGCCCGGAAAAG
ACAGACCGGAAGTCCAATGAACAAGAGTGAGCGAAGTTGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1:31204..32745+

>mRNA_H-canaliculatus_F_contig1.3.1 ID=mRNA_H-canaliculatus_F_contig1.3.1|Name=mRNA_H-canaliculatus_F_contig1.3.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1:31204..32745+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCCCGCCTCTTCGCGTACTCACGGGCGCGAACCCGGCGTCTACCAG
GGTGACCTTCCGCGCCCGATCCCCCGCTGGAAGCCCGCGGGGGGACACGA
GCGGGAACGGAGGTGCGAGCCCAAGGCGGGTTAGAGGGGCGCAGGAGGGA
AGGCAGCACCGTTTGCAACAGCGCGTGCGCTCCAAATCTCCCTCGTCGTC
CCCCGTGGAGGCAGCTCTGTTGTCGTGCGCTTTGAGCACGACGCCCGTTG
CCCTAGGTAAGAACAAGGAGGCGCCGAGAAGCGCCGCGGACGGCCCGCCG
GCCACCCGCGGCATCGACGACGCCGACATGATGTCTCCAGGCCTGGCCAA
CGATGAAAAGAAGGAGCCCGGGGTCCCTGGTCTGCTCGCGGCGAAGATGC
CCCACAGCGTTGGCAAGGACCCGACAGCGAGCGAGCTCAAGAAGATCAGA
TGCGTCCCCGTGAAGGGGGAAGGGACGGCGTTTGACGACTTTTGGAGCTC
TGGTTGGGGGTAAATGACCCCGCCTCTTCGCGTACTCACGGGCGCGAACC
CGGCGTCTACCAGGGTGACCTTCCGCGCCCGATCCCCCGCTGGAAGCCCG
CGGGGGGACACGAGCGGGAACGGAGGTGCGAGCCCAAGGCGGGTTAGAGG
GGCGCAGGAGGGAAGGCAGCACCGTTTGCAACAGCGCGTGCGCTCCAAAT
CTCCCTCGTCGTCCCCCGTGGAGGCAGCTCTGTTGTCGTGCGCTTTGAGC
ACGACGCCCGTTGCCCTAGGTAAGAACAAGGAGGCGCCGAGAAGCGCCGC
GGACGGCCCGCCGGCCACCCGCGGCATCGACGACGCCGACATGATGTCTC
CAGGCCTGGCCAACGATGAAAAGAAGGAGCCCGGGGTCCCTGGTCTGCTC
GCGGCGAAGATGCCCCACAGCGTTGGCAAGGACCCGACAGCGAGCGAGCT
CAAGAAGATCAGATGCGTCCCCGTGAAGGGGGAAGGGACGGCGTTTGACG
ACTTTTGGAGCTCTGGTTGGGGGTAA
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