mRNA_H-paniculata_contig19650.4999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19650.4999.1
Unique NamemRNA_H-paniculata_contig19650.4999.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19650.4999.1 vs. uniprot
Match: D7FX92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX92_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.910e-17
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 NVGEALVSFLQWMCAYDCLFRDPCKIANKLVATDAGTGEPLPPTLRS 141
            NVGEALVSFL WM  YD +F+DPC IANKLVATD+GTGEPLPPTLR+
Sbjct:  537 NVGEALVSFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRT 583
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BLAST of mRNA_H-paniculata_contig19650.4999.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.640e-17
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 NVGEALVSFLQWMCAYDCLFRDPCKIANKLVATDAGTGEPLPPTLRS 141
            NVGEAL SFL WM  YD +F+DPC IANKLVATD+GTGEPLPPTLR+
Sbjct: 1291 NVGEALASFLTWMANYDRVFQDPCTIANKLVATDSGTGEPLPPTLRT 1337
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19650.4999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX92_ECTSI1.910e-1780.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNQ0_9PHAE6.640e-1778.72KIX_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19650contigH-paniculata_contig19650:4519..4659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.942185-CDS-H-paniculata_contig19650:4518..46591622929488.942185-CDS-H-paniculata_contig19650:4518..4659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19650 4519..4659 -
1691480883.5831199-CDS-H-paniculata_contig19650:4518..46591691480883.5831199-CDS-H-paniculata_contig19650:4518..4659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19650 4519..4659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19650.4999.1prot_H-paniculata_contig19650.4999.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19650 4519..4659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19650.4999.1

>prot_H-paniculata_contig19650.4999.1 ID=prot_H-paniculata_contig19650.4999.1|Name=mRNA_H-paniculata_contig19650.4999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
NVGEALVSFLQWMCAYDCLFRDPCKIANKLVATDAGTGEPLPPTLRS
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mRNA from alignment at H-paniculata_contig19650:4519..4659-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19650.4999.1 ID=mRNA_H-paniculata_contig19650.4999.1|Name=mRNA_H-paniculata_contig19650.4999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig19650:4519..4659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTGGGTGAAGCCCTCGTCTCGTTCCTGCAGTGGATGTGCGCATATGA
CTGTCTCTTCCGGGACCCGTGCAAGATAGCCAACAAGCTTGTCGCGACGG
ATGCAGGCACGGGGGAACCGCTTCCGCCTACGCTGAGGTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig19650:4519..4659-

>mRNA_H-paniculata_contig19650.4999.1 ID=mRNA_H-paniculata_contig19650.4999.1|Name=mRNA_H-paniculata_contig19650.4999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig19650:4519..4659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTGGGTGAAGCCCTCGTCTCGTTCCTGCAGTGGATGTGCGCATATGA
CTGTCTCTTCCGGGACCCGTGCAAGATAGCCAACAAGCTTGTCGCGACGG
ATGCAGGCACGGGGGAACCGCTTCCGCCTACGCTGAGGTCAAACGTGGGT
GAAGCCCTCGTCTCGTTCCTGCAGTGGATGTGCGCATATGACTGTCTCTT
CCGGGACCCGTGCAAGATAGCCAACAAGCTTGTCGCGACGGATGCAGGCA
CGGGGGAACCGCTTCCGCCTACGCTGAGGTCA
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