mRNA_H-paniculata_contig19649.4997.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19649.4997.1
Unique NamemRNA_H-paniculata_contig19649.4997.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5K9P3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-17
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    4 ASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQG 270
            AS ++VVLKK+   RTT N++ LN+++++   PLP +D     L   + + I DL + F QI     ++PLTAFC P+ L+EWLR PQG
Sbjct:   50 ASPLVVVLKKDGSVRTTVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDDETVPLTAFCTPTQLFEWLRMPQG 138
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.210e-17
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 HASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQGT 273
            ++S ++V+ KK+   R T N+  LN +  ++QLP+P +DD   +L     Y + D+ + F QI V + +IPLTAF   SGL+EWL+ PQG+
Sbjct:  308 YSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGS 398
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5K7H7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.230e-16
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 HASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQG 270
            ++S ++V+ KK+   R T N   LN +  ++QLP+P +DD   +L     Y ++D+ + F QI V + +IPLTAF   SGL+EWL+ PQG
Sbjct:  145 YSSPLVVIPKKSGGVRITVNCRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLLDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQG 234
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5K248_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K248_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.770e-16
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   13 VIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQGT 273
            ++V+ KK+   R T N   LN +  ++QLP+P +DD  A+L   + Y + D+ + F QI V + +IPLTAF   SGL+EWL+ PQG+
Sbjct:  213 LVVIPKKSGGLRITVNNRKLNKLCALSQLPIPRVDDTLAKLLKGKIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGS 299
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5JDP0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.400e-16
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 HASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQGT 273
            ++S ++V+ KK+   R T N+  LN +  ++QLP+P +DD +  L     Y + D+ + F QI V + +IPLTAF   SGL+EWL+ PQG+
Sbjct:  408 YSSPLVVIPKKSGGIRITVNYRKLNKLCALSQLPIPRVDDTWDNLLKGRIYFLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGS 498
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5L5J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.470e-16
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    4 ASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQG 270
            AS ++V+ KK+   R T N++ LN+++++   PLP +DD    L   + + I DL + F QI+  + ++PLTAFC P+ L+EWLR PQG
Sbjct:   26 ASPLLVIPKKDGSVRITVNYKRLNALVDLDGQPLPRVDDILDFLYTGKVFSIFDLNSAFHQIESDEDTVPLTAFCTPTQLFEWLRMPQG 114
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5JSG5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.490e-16
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 HASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQGTV 276
            ++S ++V+ KK+   R T N+  LN +  ++QLP+P +DD   +L     Y + D+ + F QI V + +IPLTAF   SGL+EWL+ PQG +
Sbjct:   33 YSSPLVVIPKKSCGVRITVNYCKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGGI 124
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5L4V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.130e-16
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    4 ASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQG 270
            AS ++V+LKK+   R T N++ LN+++++   PLP +D     L   + + I DL + F QI   + ++PLTAFC P+ L+EWLR PQG
Sbjct:   94 ASPLVVILKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQG 182
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.740e-16
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    4 ASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQG 270
            AS V+V+ KK    R T N++ LN+++++   PLP +D     L   + + I DL + F QI   K ++PLTAFC P+ L+EWLR PQG
Sbjct:  745 ASPVVVIPKKEGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDKDTVPLTAFCTPTQLFEWLRMPQG 833
[Close]
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Match: A0A6H5JV14_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV14_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.620e-16
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 HASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREAYPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQGT 273
            ++S ++V+ KK+     T N+  LN +  ++QLP+P +DD   +L     Y + D+ + F QI V + +I LTAF   SGL+EWL+ PQG+
Sbjct:   46 YSSPLVVIPKKSGGVHITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRETIHLTAFVTSSGLFEWLKMPQGS 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19649.4997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9P3_9PHAE2.040e-1743.82Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JUZ4_9PHAE7.210e-1740.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7H7_9PHAE1.230e-1641.11NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K248_9PHAE1.770e-1642.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JDP0_9PHAE2.400e-1640.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5J9_9PHAE4.470e-1641.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSG5_9PHAE4.490e-1640.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4V5_9PHAE6.130e-1641.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVW3_9PHAE8.740e-1642.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV14_9PHAE9.620e-1638.46Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19649contigH-paniculata_contig19649:361..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog34506.g1451
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,COG2801@1,KOG0017@2759
COG Functional cat.OU
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.725945-CDS-H-paniculata_contig19649:360..6631622929488.725945-CDS-H-paniculata_contig19649:360..663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19649 361..663 -
1691480883.4583368-CDS-H-paniculata_contig19649:360..6631691480883.4583368-CDS-H-paniculata_contig19649:360..663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19649 361..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19649.4997.1prot_H-paniculata_contig19649.4997.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19649 361..663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19649.4997.1

>prot_H-paniculata_contig19649.4997.1 ID=prot_H-paniculata_contig19649.4997.1|Name=mRNA_H-paniculata_contig19649.4997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
HASLVIVVLKKNDKHRTTCNFENLNSVMEIAQLPLPHIDDQFARLGDREA
YPIIDLMTGFFQIDVKKHSIPLTAFCAPSGLYEWLRAPQGTVVCLDILNV
*
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mRNA from alignment at H-paniculata_contig19649:361..663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19649.4997.1 ID=mRNA_H-paniculata_contig19649.4997.1|Name=mRNA_H-paniculata_contig19649.4997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig19649:361..663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGCTTCGCTGGTAATTGTGGTACTGAAGAAGAATGATAAACACCGAAC
AACGTGCAATTTTGAAAATTTGAATTCGGTCATGGAGATCGCGCAATTGC
CTTTGCCGCATATCGATGACCAATTCGCACGCCTGGGGGACCGGGAGGCG
TATCCCATTATTGACCTCATGACGGGATTCTTTCAAATTGATGTTAAAAA
ACACTCCATACCTCTTACAGCGTTTTGCGCGCCTAGTGGCTTGTACGAGT
GGCTTCGAGCACCGCAAGGTACGGTAGTTTGCCTGGACATATTAAACGTG
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19649:361..663-

>mRNA_H-paniculata_contig19649.4997.1 ID=mRNA_H-paniculata_contig19649.4997.1|Name=mRNA_H-paniculata_contig19649.4997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig19649:361..663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGCTTCGCTGGTAATTGTGGTACTGAAGAAGAATGATAAACACCGAAC
AACGTGCAATTTTGAAAATTTGAATTCGGTCATGGAGATCGCGCAATTGC
CTTTGCCGCATATCGATGACCAATTCGCACGCCTGGGGGACCGGGAGGCG
TATCCCATTATTGACCTCATGACGGGATTCTTTCAAATTGATGTTAAAAA
ACACTCCATACCTCTTACAGCGTTTTGCGCGCCTAGTGGCTTGTACGAGT
GGCTTCGAGCACCGCAAGGTACGGTAGTTTGCCTGGACATATTAAACGTG
TGACATGCTTCGCTGGTAATTGTGGTACTGAAGAAGAATGATAAACACCG
AACAACGTGCAATTTTGAAAATTTGAATTCGGTCATGGAGATCGCGCAAT
TGCCTTTGCCGCATATCGATGACCAATTCGCACGCCTGGGGGACCGGGAG
GCGTATCCCATTATTGACCTCATGACGGGATTCTTTCAAATTGATGTTAA
AAAACACTCCATACCTCTTACAGCGTTTTGCGCGCCTAGTGGCTTGTACG
AGTGGCTTCGAGCACCGCAAGGTACGGTAGTTTGCCTGGACATATTAAAC
GTGTGA
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