mRNA_H-paniculata_contig19646.4996.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19646.4996.1
Unique NamemRNA_H-paniculata_contig19646.4996.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: D8LQQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ6_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 5.780e-62
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVATV 357
            +VCSV SPFFLS ATN+LY GD+ ETMK VG+YA+LAF+AKALKEAQSLVYLKVKQQAY+EIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAI EC+ATV
Sbjct:  227 KVCSVTSPFFLSNATNSLYHGDLGETMKYVGLYAILAFSAKALKEAQSLVYLKVKQQAYIEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIAECIATV 345          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A835Z4N6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N6_9STRA)

HSP 1 Score: 198 bits (504), Expect = 4.280e-57
Identity = 96/119 (80.67%), Postives = 106/119 (89.08%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVATV 357
            + CSV SPFFLS ATNALY GD T   + V +YALL+FTAK LKE QSL+YLKVKQQAY+EIAE +FAHLHTLSLQWHLKKKMGNV+RSMDRGT+AANNL+TYLFLYLVPAIGECVATV
Sbjct:  116 KACSVTSPFFLSDATNALYNGDYTGAARGVALYALLSFTAKFLKECQSLIYLKVKQQAYIEIAEHTFAHLHTLSLQWHLKKKMGNVIRSMDRGTEAANNLVTYLFLYLVPAIGECVATV 234          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A7S2UVY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY2_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.640e-44
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVA 351
            + CSV SP FL+ ATN L        +  VG+Y  LA  +K LKEAQ +VYLKVKQ+AYVEIAE++FAHLH LSLQWHLKKKMGNV+RSMDRGT+AAN L+TYLFLYLVP++ EC+A
Sbjct:   89 KACSVASPVFLASATNDLANAQYRSAVVQVGLYCSLALASKWLKEAQGVVYLKVKQEAYVEIAERTFAHLHNLSLQWHLKKKMGNVIRSMDRGTEAANTLVTYLFLYLVPSLAECLA 205          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A7S3UX91_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX91_HETAK)

HSP 1 Score: 150 bits (379), Expect = 8.690e-40
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVA 351
            +  +V SP FL+ ATN L  GD    + N+G Y   +F  K  KE Q LVYLKVKQ AY+EIA+++FAHLH LSLQWHLKK+MGNV+RSMDRG++AAN L  YLFLYL+P++ EC+A
Sbjct:  141 KAATVTSPIFLAHATNRLAAGDYQACVTNLGAYVAFSFMGKFFKEMQGLVYLKVKQAAYIEIAQRTFAHLHNLSLQWHLKKRMGNVIRSMDRGSEAANTLTNYLFLYLLPSLAECLA 257          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: I2CPG9_NANGC (Atp-binding cassette superfamily (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPG9_NANGC)

HSP 1 Score: 136 bits (343), Expect = 1.100e-36
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALY---GGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVA 351
            +V SV SP FLS AT+AL    G D +      G+Y LL+F ++ LKE Q+LVYL VK+ AY EI   +F+HL  LSL WHLKKK+G V+R+MDRGTDAA+ ++TYLFLYL+PA+GEC+A
Sbjct:   43 KVSSVYSPLFLSLATSALSSSPGPDYSRASLYAGVYCLLSFGSRFLKECQNLVYLDVKKVAYAEICSSTFSHLLNLSLHWHLKKKIGVVIRAMDRGTDAADTVVTYLFLYLLPALGECLA 162          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A0G4FKX7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FKX7_VITBC)

HSP 1 Score: 141 bits (355), Expect = 1.520e-36
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVA 351
            + C+V +P FL  A NAL  G V   +  V ++  L F+ KALKE QSL+Y+KV+Q AY+EIA+ +F HLH LSLQWHLKK+MGNV+RSMDRG DAAN+L+T+  LYL+P++ EC A
Sbjct:  237 KTCNVCAPAFLGFAVNALTDGRVGGLITYVVLFGFLTFSGKALKECQSLLYIKVQQAAYIEIAQHTFQHLHNLSLQWHLKKRMGNVIRSMDRGCDAANSLMTWGVLYLIPSVAECFA 353          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A0K6S8V7_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6S8V7_9ALVE)

HSP 1 Score: 140 bits (354), Expect = 2.110e-36
Identity = 69/126 (54.76%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALY---------GGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVA 351
            + C+ ++P F+  A+ +L           G + +T   VG+Y   +F +KALKE Q LVYL+VKQ AY+EIA+ +F HL  LSLQWHLKKKMGNVVRSMDRGT+AA++L+TYLFLYL+P +GEC+A
Sbjct:  279 KACNAIAPLFIGLASASLREALDDAEGRSGHLYDTALWVGLYGAFSFLSKALKECQGLVYLRVKQAAYIEIAQFTFEHLQRLSLQWHLKKKMGNVVRSMDRGTEAADSLMTYLFLYLLPTVGECIA 404          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A7S0RG67_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RG67_9CHLO)

HSP 1 Score: 137 bits (346), Expect = 1.670e-35
Identity = 59/115 (51.30%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGEC 345
            ++ ++++P +L++ATN L  G++     NVG+Y  L FT+   KE Q++ YL VKQ AY+EIA  +F HLH LSL WHL+KKMGNV+R+MDRG ++AN+++ YLFLYL+P + EC
Sbjct:  211 KISNILAPLYLAKATNHLQQGNLQGATLNVGVYCALRFTSTTFKEFQNMAYLSVKQAAYIEIAHYTFVHLHNLSLDWHLRKKMGNVLRAMDRGVESANSVVNYLFLYLLPTMAEC 325          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A7S2KN46_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KN46_9DINO)

HSP 1 Score: 135 bits (341), Expect = 9.680e-35
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 QVCSVMSPFFLSRATNALYG---------GDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVA 351
            +VCS+++P FL+RATN +              ++ + N+ +YA +   +KALKEAQSL+Y+KV+Q AY+EIA+Q+FAHLH LSL WHL+KKMGNVVRSMDRG  AA   + Y+FLYL P + E +A
Sbjct:  133 KVCSIVAPIFLARATNQISDLLKEGPGPHSMTSDIITNLVLYAWMILLSKALKEAQSLIYIKVQQAAYIEIADQTFAHLHNLSLDWHLRKKMGNVVRSMDRGIQAAQQTMQYVFLYLFPTLAEALA 258          
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Match: A0A7S3GVA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVA3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 9.790e-35
Identity = 56/115 (48.70%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    7 CSVMSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVKQQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLFLYLVPAIGECVA 351
            C++ +PFF++ A N L  G +    + +  Y +L   +   +E QS++Y+KVKQQA +++ E +F HLHTLSL WHL KK G+V++SMDRG DAA++L+TYLFL+L+PA+ EC+A
Sbjct:   83 CNLYAPFFIADAANYLVAGQLVAATQQMVFYCILRTLSSFFREMQSILYIKVKQQASIQLQELTFTHLHTLSLNWHLSKKTGSVMKSMDRGVDAASSLVTYLFLFLIPAMAECLA 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19646.4996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQQ6_ECTSI5.780e-6288.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4N6_9STRA4.280e-5780.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UVY2_9STRA2.640e-4466.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UX91_HETAK8.690e-4059.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I2CPG9_NANGC1.100e-3657.50Atp-binding cassette superfamily (Fragment) n=1 Ta... [more]
A0A0G4FKX7_VITBC1.520e-3657.26Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0K6S8V7_9ALVE2.110e-3654.76Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]
A0A7S0RG67_9CHLO1.670e-3551.30Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S2KN46_9DINO9.680e-3552.38Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S3GVA3_9STRA9.790e-3548.70Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19646contigH-paniculata_contig19646:133..735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue2e-50
Seed eggNOG ortholog2880.D8LQQ6
Preferred namehmt1
KEGG koko:K05661
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006857,GO:0006950,GO:0007034,GO:0008144,GO:0008150,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0015399,GO:0015405,GO:0015440,GO:0015711,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030001,GO:0030554,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0032553,GO:0032555,GO:0032559,GO:0033220,GO:0034220,GO:0034486,GO:0034635,GO:0034775,GO:0035443,GO:0035639,GO:0035672,GO:0036094,GO:0036246,GO:0036249,GO:0042221,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0042939,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044604,GO:0046686,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0051716,GO:0055085,GO:0061687,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071585,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071993,GO:0071994,GO:0071995,GO:0071996,GO:0072337,GO:0072348,GO:0097159,GO:0097237,GO:0097367,GO:0097501,GO:0098588,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098754,GO:0098805,GO:0098849,GO:0098852,GO:1901265,GO:1901363,GO:1904680,GO:1990170,GO:1990748
EggNOG free text desc.heme-transporting ATPase activity
EggNOG OGsCOG5265@1,KOG0056@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size357
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19646.4996.1prot_H-paniculata_contig19646.4996.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19646 133..720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.6449587-CDS-H-paniculata_contig19646:132..3311622929488.6449587-CDS-H-paniculata_contig19646:132..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19646 133..331 -
1691480883.4253364-CDS-H-paniculata_contig19646:132..3311691480883.4253364-CDS-H-paniculata_contig19646:132..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19646 133..331 -
1622929488.6568937-CDS-H-paniculata_contig19646:577..7201622929488.6568937-CDS-H-paniculata_contig19646:577..720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19646 578..720 -
1691480883.4376354-CDS-H-paniculata_contig19646:577..7201691480883.4376354-CDS-H-paniculata_contig19646:577..720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19646 578..720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.6817517-UTR-H-paniculata_contig19646:720..7351622929488.6817517-UTR-H-paniculata_contig19646:720..735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19646 721..735 -
1691480883.4483235-UTR-H-paniculata_contig19646:720..7351691480883.4483235-UTR-H-paniculata_contig19646:720..735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19646 721..735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19646.4996.1

>prot_H-paniculata_contig19646.4996.1 ID=prot_H-paniculata_contig19646.4996.1|Name=mRNA_H-paniculata_contig19646.4996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MSPFFLSRATNALYGGDVTETMKNVGIYALLAFTAKALKEAQSLVYLKVK
QQAYVEIAEQSFAHLHTLSLQWHLKKKMGNVVRSMDRGTDAANNLITYLF
LYLVPAIGECVATV
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mRNA from alignment at H-paniculata_contig19646:133..735-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19646.4996.1 ID=mRNA_H-paniculata_contig19646.4996.1|Name=mRNA_H-paniculata_contig19646.4996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at H-paniculata_contig19646:133..735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTGCAGCGTGATGAGTCCTTTCTTCCTGAGCCGAGCGACGAATGC CCTGTACGGTGGCGACGTGACCGAGACGATGAAGAACGTTGGGATATACG CTCTGCTCGCGTTCACTGCCAAGGCATTAAAAGAGGCCCAAAGCCTGGTC TACCTCAAGTGAGGAAAAAATATACATATCAAGTTTGTTTGTTTTTTCCC GGCAGGGGGGGTCAGGGGGGGCATTTATTTGATTTCATGTTATATCCAAG TTTTTCATGTGTACATGGCGCGAATAATCGACTTCGCCGTGAGCATCAGG TTGGTTCTATTATTGTTAAGTTGAATTTCTGGTGGTTTAAACTTTCGGCC AATCCCATCCACAACAACCCAGACAATCATGGTGCCTATTTGTAATAATA ACAGGGTCAAGCAGCAGGCGTACGTCGAGATCGCGGAGCAGTCGTTCGCG CACCTGCACACCCTGTCCCTACAGTGGCACCTTAAGAAGAAGATGGGCAA CGTGGTGCGATCTATGGATCGCGGTACGGACGCCGCCAACAATCTCATCA CCTACCTTTTTCTCTACCTCGTGCCTGCCATCGGTGAATGTGTGGCTACG GTG
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Coding sequence (CDS) from alignment at H-paniculata_contig19646:133..735-

>mRNA_H-paniculata_contig19646.4996.1 ID=mRNA_H-paniculata_contig19646.4996.1|Name=mRNA_H-paniculata_contig19646.4996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig19646:133..735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCCTTTCTTCCTGAGCCGAGCGACGAATGCCCTGTACGGTGGCGA
CGTGACCGAGACGATGAAGAACGTTGGGATATACGCTCTGCTCGCGTTCA
CTGCCAAGGCATTAAAAGAGGCCCAAAGCCTGGTCTACCTCAAATGAGTC
CTTTCTTCCTGAGCCGAGCGACGAATGCCCTGTACGGTGGCGACGTGACC
GAGACGATGAAGAACGTTGGGATATACGCTCTGCTCGCGTTCACTGCCAA
GGCATTAAAAGAGGCCCAAAGCCTGGTCTACCTCAAGGTCAAGCAGCAGG
CGTACGTCGAGATCGCGGAGCAGTCGTTCGCGCACCTGCACACCCTGTCC
CTACAGTGGCACCTTAAGAAGAAGATGGGCAACGTGGTGCGATCTATGGA
TCGCGGTACGGACGCCGCCAACAATCTCATCACCTACCTTTTTCTCTACC
TCGTGCCTGCCATCGGTGAATGTGTGGCTACGGTGGGTCAAGCAGCAGGC
GTACGTCGAGATCGCGGAGCAGTCGTTCGCGCACCTGCACACCCTGTCCC
TACAGTGGCACCTTAAGAAGAAGATGGGCAACGTGGTGCGATCTATGGAT
CGCGGTACGGACGCCGCCAACAATCTCATCACCTACCTTTTTCTCTACCT
CGTGCCTGCCATCGGTGAATGTGTGGCTACGGTG
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