mRNA_H-paniculata_contig19641.4995.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19641.4995.1
Unique NamemRNA_H-paniculata_contig19641.4995.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19641.4995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19641contigH-paniculata_contig19641:553..2292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19641.4995.1prot_H-paniculata_contig19641.4995.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19641 575..2292 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.5807316-UTR-H-paniculata_contig19641:552..5741622929488.5807316-UTR-H-paniculata_contig19641:552..574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19641 553..574 +
1691480883.3859372-UTR-H-paniculata_contig19641:552..5741691480883.3859372-UTR-H-paniculata_contig19641:552..574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19641 553..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.5933545-CDS-H-paniculata_contig19641:574..8211622929488.5933545-CDS-H-paniculata_contig19641:574..821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19641 575..821 +
1691480883.4004433-CDS-H-paniculata_contig19641:574..8211691480883.4004433-CDS-H-paniculata_contig19641:574..821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19641 575..821 +
1622929488.6074545-CDS-H-paniculata_contig19641:2263..22921622929488.6074545-CDS-H-paniculata_contig19641:2263..2292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19641 2264..2292 +
1691480883.412587-CDS-H-paniculata_contig19641:2263..22921691480883.412587-CDS-H-paniculata_contig19641:2263..2292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19641 2264..2292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19641.4995.1

>prot_H-paniculata_contig19641.4995.1 ID=prot_H-paniculata_contig19641.4995.1|Name=mRNA_H-paniculata_contig19641.4995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MTTVQLQAPLDSRGPHEHRREVCWRVSYVFSSRWFARSFNGHPRPRRRGR
DSPRRNFLRVLRQEPRPVRGGMRYARRSGEESGAVVKKAWVA
back to top

mRNA from alignment at H-paniculata_contig19641:553..2292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19641.4995.1 ID=mRNA_H-paniculata_contig19641.4995.1|Name=mRNA_H-paniculata_contig19641.4995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig19641:553..2292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAATACCAAAGAAGATACTATGACTACCGTTCAGTTGCAAGCCCCGC
TGGACTCTCGAGGCCCGCATGAGCACCGTCGAGAAGTCTGTTGGCGTGTC
TCCTACGTCTTCAGTAGCCGCTGGTTCGCGAGGTCTTTCAACGGACACCC
CCGCCCCCGCCGCCGCGGACGTGACAGCCCTCGTCGTAACTTTCTACGAG
TACTGCGCCAAGAACCTCGACCCGTTCGTGGCGGCATGCGATACGCTAGG
AGGAGCGGCGAGGAAAGCGGTGGTTTTGGTGTCGTTTCCTCTATTCCTAT
TAGCTTGGCTTGGCTTGGTTCGCCTTTCAGGAGCTACGTGAGTCCGTAGG
TAGAGGACAAGCACAAAATTTGCGCATGTAGCCATGGCTCTAATGTTACT
ACTAGTGGTTGAGAGATTGTTTAGAGGCTTGGCTATTTCGTACGGGTGTT
GGATTCTTTCGTCAGGAACTTGACTCGTGGACGTTTTTGATACGAAAAGC
GAATAAAAAACATATGCGGTGGGCTAAAAAACGAAGGTTCCGGTGCCCGC
ATGCTAACGGCCTTTGTAGCTTTGCCATTGTGATTTCTCTCTGCTGATTT
TTCAGATGTGACCTGGATTGTGTCTTTTTTCTTTTCGAAAGTGTTGTGTA
TAGGAACTGCGAGAGAAAAGAGTATTCTACTTGCTTATGACCCCTTTCAA
CAAACAAGGCATGTCCCCCCCCCCTCTAAGGTGGTTTGTCACGAAACGTT
CTATCAAGTGGTGCGGCGCCGTGACCTGGTGGCAGTGGTACTTCCATATC
AAGCACACCATTGCGGCTGCAGCAGTCAGCCTGGGACGTGTGTGCATGAC
ATTAAAATGGTCACTGTTGACCTACATTATGGTGGTGGTTGTCATCACTT
CCAGAAAAATGACTGTTGATCTGGAAAACAATATTACACCGTGCTTCATC
AAAGTGCAGCTCGAATAGGGCAAGTTGGTCTGCCAACAGTCTGTAACAGT
CTCGGATCACTGATTTATACTGGCTGGATGTTGGTGGTGGTCATGTATGG
TGCGGCTCGCAATACAAAGTACATGTATACCCCGTTTTTTACATATAAAC
AACAAAATCAATCAACACGTTCTGTGCTTGTTACATGGGGATTACGGAAT
ACCCTGCGCATGGTGGTGACGGACGACTCGGAGCTATTTTTCCTTAGTTT
AATCTAATAAGTTCACGGGGACGAAGAAGCTCACTTTTGGCACTTTTCAT
CACACTCCCACGTTAGTGTCTAGTGGAGGGAACTTGTGGCAAGTCACTCC
ACCCAAATATGACGGTCTTGACTTTTGTGTAAAGTTGTACCTCGTGTATC
TTACAGAGATTCTCCGGACGACGTCGGTTTCATTGAAAAGCCGAAAACGG
CCAGGTACATATTCTCTCTTAAGACGTGAGCCGTTTCTAGGCAGGCCATG
GCGGGAGCACCCTCCAAATGGCGCGGTTCAAATTATCCAAGTGCAGAAAT
CATTCAGGTAATCAAATTATCTGATACGACAAGATGGATGTTTTTCGCTC
GATAAAGTGTGTTTCGATATTGCCCGTGCTGGAGCATTTGGTACCAACTT
GGTGGGTTTTAATCTCGTTGCTTCCCTTTCGACTTTTTTACCAACGCTAT
TATTTTTTGGTCTCTCGCAAATATCCATATCTGTACATTCCTGCACGTAT
TCTGTAACAAGGAGCCGTGGTCAAGAAAGCCTGGGTGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19641:553..2292+

>mRNA_H-paniculata_contig19641.4995.1 ID=mRNA_H-paniculata_contig19641.4995.1|Name=mRNA_H-paniculata_contig19641.4995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig19641:553..2292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTACCGTTCAGTTGCAAGCCCCGCTGGACTCTCGAGGCCCGCATGA
GCACCGTCGAGAAGTCTGTTGGCGTGTCTCCTACGTCTTCAGTAGCCGCT
GGTTCGCGAGGTCTTTCAACGGACACCCCCGCCCCCGCCGCCGCGGACGT
GACAGCCCTCGTCGTAACTTTCTACGAGTACTGCGCCAAGAACCTCGACC
CGTTCGTGGCGGCATGCGATACGCTAGGAGGAGCGGCGAGGAAAGCGATG
ACTACCGTTCAGTTGCAAGCCCCGCTGGACTCTCGAGGCCCGCATGAGCA
CCGTCGAGAAGTCTGTTGGCGTGTCTCCTACGTCTTCAGTAGCCGCTGGT
TCGCGAGGTCTTTCAACGGACACCCCCGCCCCCGCCGCCGCGGACGTGAC
AGCCCTCGTCGTAACTTTCTACGAGTACTGCGCCAAGAACCTCGACCCGT
TCGTGGCGGCATGCGATACGCTAGGAGGAGCGGCGAGGAAAGCGGAGCCG
TGGTCAAGAAAGCCTGGGTGGCGGAGCCGTGGTCAAGAAAGCCTGGGTGG
CG
back to top