mRNA_H-paniculata_contig1964.4990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1964.4990.1
Unique NamemRNA_H-paniculata_contig1964.4990.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: D7FZW6_ECTSI (Complex I intermediate-associated protein 30, mitochondrial (NADH dehydrogenase [ubiquinon) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW6_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.340e-31
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    7 GFCGARPQRRLRPFKLKD-YTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAA-LHSIGLSISDGVAGPFQMDIAWISAI 348
            GFCG R  RR  P  L D Y  +EMR+RTDGR YEVN EP S I +D+YQ  + T AG+W T+ LPL++L LTG+GQ R  QR  +    L SIG +I+DGV GPF++D+AW++ +
Sbjct:  149 GFCGTRSTRRQEPLVLPDGYRGVEMRIRTDGRQYEVNFEPQSGIINDLYQGYVRTPAGQWATVSLPLNRLLLTGQGQIRDIQRKWDVGMELKSIGFTIADGVGGPFRLDVAWVALV 264          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: A0A835YW63_9STRA (Complex I intermediate-associated protein 30-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW63_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    1 RAGFCGARPQRRLRPFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSI----SDGVAGPFQMDIAWISAIQ 351
            R+GFC  R  +R R   L +Y  + ++VRTDGR Y VN+EP +    D+YQ  +   AG W  + LP D L  T RG+     R L+   L S+G SI      G  GPFQ+D+ W+ A Q
Sbjct:   83 RSGFCATRSPKRWRGVDLTEYEGLALKVRTDGRHYAVNIEPQTYFDTDLYQGYIIAPAGLWTVVTLPFDGLMHTSRGRVVDESRPLDAVHLLSLGFSIFKEIDKGREGPFQLDVQWVRARQ 203          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: W7U321_9STRA (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U321_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.140e-17
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 RAGFCGARPQRRLRPFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLD-THAGEWGTIVLPLDQLTLTGRGQYRVYQRALERA-ALHSIGLSISDGVAGPFQMDIAWISAI 348
            R G+C  + +   R F+++ Y  +E+ VRTDGR Y  N+E +S  PD++YQ  +     G+W TI LP   +TLT  G+    Q+ L+    L SIG  I+DG  GPF ++IA ++A+
Sbjct:  104 RTGYCALKVEM-PRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAV 220          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: L8GVE8_ACACA (Complex I intermediateassociated CIA30 protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVE8_ACACA)

HSP 1 Score: 81.6 bits (200), Expect = 1.180e-16
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    4 AGFCGARPQRRLRPFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSISDGVAGPFQMDIAWISAI 348
            AG+ G +P++R     L  + A+E+R +TDGR+Y  N++ DS++   ++QA   T   EW  +VLP D+ TLT +GQ       ++     ++   +++   G F+M++ W+ AI
Sbjct:   89 AGYAGLQPRQRKTIKSLDGFDALEVRAKTDGRVYIANIKTDSMVKHHLFQAFFTTRKDEWTNVVLPFDRFTLTFQGQVEGESLPIDPRQFQAVSFLMAERKDGEFRMELEWVKAI 203          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: F0W2C2_9STRA (Uncharacterized protein AlNc14C9G1172 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2C2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.810e-13
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 RAGFCGARPQRRLRPFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRA-LERAALHSIGLSISDGVAGPFQMDIAWISAI 348
            R+G+C  R  R  +  +L     ++MRV+TDGR++ VN++ +   P DI+   +     +W  I LP   L LT RG  ++     L  + L +IG +ISD   GPF++ + WI AI
Sbjct:   64 RSGYCAVRAPR-PKEVQLFGSQGLQMRVKTDGRIFRVNIQTEGWNPFDIHMGFIRAPPSKWVDIELPFSSLLLTSRGYVKMDDATVLYPSKLLNIGFAISDQEEGPFELRVQWIKAI 179          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: A0A6B2LQM7_9EUKA (CIA30 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQM7_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 7.860e-13
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1
Query:    4 AGFCGARPQRRLRPFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLDT-HAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSISDGVAGPFQMDIAWISAIQ 351
            +G+   R  R   P  L  + A+E+R++TDGRLY   V+  + +P+DIYQ  L      EW  +V+P     LT RG        ++   +   G+ +++   GPF M I WI AI+
Sbjct:   11 SGYVCLRSPRFDPPLNLDQFDALELRIKTDGRLYVAQVKTRTNVPEDIYQTILPPLPPNEWHRVVVPFQDFLLTWRGCTEEKIEPVQMDHIEHFGILMAERRNGPFSMHIDWIRAIK 127          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: A0A7Y2FIK2_9BACT (CIA30 family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2FIK2_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 2.550e-12
Identity = 33/99 (33.33%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   43 PFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSISDGVAGPFQMDIAWI 339
            P  L   T IE+RVR DGR Y++ +  D       ++A+ +T  GEW  + +P ++   T RG+       L+R  +  +GL ++D   GPF ++I WI
Sbjct:   66 PRNLAQATGIEVRVRGDGRTYQLRLRDDDRFDGAAFRASFETKKGEWTVVRIPFEEFVPTFRGRTLTNVPPLDREKIRQVGLMLADKNPGPFSLEIDWI 164          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: A0A7W5GXF7_9GAMM (Monofunctional biosynthetic peptidoglycan transglycosylase n=2 Tax=Halomonas TaxID=2745 RepID=A0A7W5GXF7_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 7.630e-11
Identity = 35/115 (30.43%), Postives = 55/115 (47.83%), Query Frame = 1
Query:    7 GFCGARPQRRLRPFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIYQATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSISDGVAGPFQMDIAWISAIQ 351
            GF   R  R    F L     + +RVR DGR Y++ +  D +     Y+A     AGEW    LP  +     RG+        +  A+  +GL I+D  AGPF++++ W+ A++
Sbjct:   52 GFASVR--REPEAFDLSKTAGLLLRVRGDGRRYQLRLRTDRLFDGGAYRALFQPAAGEWQQFALPWHEFEAVFRGRRLEDAPPFDPGAIQQVGLLIADRTAGPFRLEVDWLDAME 164          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: UPI001E1D7450 (complex I intermediate-associated protein 30, mitochondrial-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7450)

HSP 1 Score: 66.6 bits (161), Expect = 1.520e-10
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 RAGFCGAR-PQRRLR-----PFKLKDYTAIEMRVRTDGRLYEVNVEPD---SVIPDDIYQATLDTHAGE-WGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSISDGVAGPFQMDIAWISAIQ 351
            RAG+C  R P  +L      P+    YT + +RVR DGR Y + ++ D    V   D+Y   L T  G  W T+ +P     L  RG+ +  Q+      + + GLS+ DGV GPF+++I +I+ ++
Sbjct:  182 RAGYCNLRSPYNKLAFERQVPYDWSRYTHMYLRVRGDGRNYMLLIQMDRFFDVQTHDMYNFPLYTRGGPYWQTVKVPFSSFFLANRGRAQDQQKPFSLDKVKNFGLSVGDGVKGPFRLEIDYIALVR 308          
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Match: UPI0005BCF058 (CIA30 family protein n=1 Tax=Halomonas halodenitrificans TaxID=28252 RepID=UPI0005BCF058)

HSP 1 Score: 63.5 bits (153), Expect = 3.660e-10
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   76 MRVRTDGRLYEVNVEPDSVIPDDIYQATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSISDGVAGPFQMDIAWI 339
            +RVR DGR Y++ +  D +     Y+A     AGEW  + LP        RG+       L+ AAL  +GL I+D   GPF++++AW+
Sbjct:   74 LRVRGDGRRYQLRLRTDELFDGGAYRALFQPPAGEWQCVALPWHAFEAVFRGRQLEDAPPLDPAALRQVGLLIADRRPGPFRLELAWV 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1964.4990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW6_ECTSI1.340e-3152.59Complex I intermediate-associated protein 30, mito... [more]
A0A835YW63_9STRA1.140e-2040.50Complex I intermediate-associated protein 30-domai... [more]
W7U321_9STRA3.140e-1738.98NADH:ubiquinone oxidoreductase intermediate-associ... [more]
L8GVE8_ACACA1.180e-1632.17Complex I intermediateassociated CIA30 protein (Fr... [more]
F0W2C2_9STRA2.810e-1335.04Uncharacterized protein AlNc14C9G1172 n=1 Tax=Albu... [more]
A0A6B2LQM7_9EUKA7.860e-1333.33CIA30 domain-containing protein n=1 Tax=Arcella in... [more]
A0A7Y2FIK2_9BACT2.550e-1233.33CIA30 family protein n=1 Tax=Gemmatimonadetes bact... [more]
A0A7W5GXF7_9GAMM7.630e-1130.43Monofunctional biosynthetic peptidoglycan transgly... [more]
UPI001E1D74501.520e-1033.07complex I intermediate-associated protein 30, mito... [more]
UPI0005BCF0583.660e-1035.23CIA30 family protein n=1 Tax=Halomonas halodenitri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1964contigH-paniculata_contig1964:350..1530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue6e-26
Seed eggNOG ortholog2880.D7FZW6
Preferred nameNDUFAF1
KEGG koko:K18159
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005829,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0036293,GO:0036296,GO:0042594,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050896,GO:0051082,GO:0055086,GO:0055093,GO:0055114,GO:0065003,GO:0070469,GO:0070482,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG2435@1,KOG2435@2759
Ec32 ortholog descriptionComplex I intermediate-associated protein 30, mitochondrial precursor (NADH dehydrogenase [ubiquinon])
Ec32 orthologEc-22_003820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.2250435-CDS-H-paniculata_contig1964:349..5991622929488.2250435-CDS-H-paniculata_contig1964:349..599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 350..599 -
1691480883.2154863-CDS-H-paniculata_contig1964:349..5991691480883.2154863-CDS-H-paniculata_contig1964:349..599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 350..599 -
1622929488.2501502-CDS-H-paniculata_contig1964:1429..15301622929488.2501502-CDS-H-paniculata_contig1964:1429..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 1430..1530 -
1691480883.2252107-CDS-H-paniculata_contig1964:1429..15301691480883.2252107-CDS-H-paniculata_contig1964:1429..1530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 1430..1530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1964.4990.1prot_H-paniculata_contig1964.4990.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1964 350..1530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1964.4990.1

>prot_H-paniculata_contig1964.4990.1 ID=prot_H-paniculata_contig1964.4990.1|Name=mRNA_H-paniculata_contig1964.4990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
RAGFCGARPQRRLRPFKLKDYTAIEMRVRTDGRLYEVNVEPDSVIPDDIY
QATLDTHAGEWGTIVLPLDQLTLTGRGQYRVYQRALERAALHSIGLSISD
GVAGPFQMDIAWISAIQ
back to top

mRNA from alignment at H-paniculata_contig1964:350..1530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1964.4990.1 ID=mRNA_H-paniculata_contig1964.4990.1|Name=mRNA_H-paniculata_contig1964.4990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-paniculata_contig1964:350..1530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCAGGATTCTGCGGGGCAAGACCGCAGCGAAGATTACGGCCGTTTAA ACTGAAGGACTACACTGCCATCGAGATGAGAGTACGCACGGATGGAAGAC TGTAAGTGTTGTGTGCCCGTGTTCTTTCGGGATAATTCTAGCGACAAATA ACGTTTTTGGCGAAAAATTCGTGATTTGTAAATCTGGGGATTTGGGGTTT TGCGAAAAAGGTCCCAAGGCTGACATTCACCTAAAGTCTAAAATTCCCAA CGAGGACGGAACGGAAAGTTTAGGTTGTCTTTTATTAACATTTCGACCGC CTTAGGAATTTTGAAGTCTGAGTATTTGGGCTCGTTTGATGTCCCAGCCA TACCCCAATTTTCCGGATATCCAGGTTTTGGTATTTTTCGCCAAAAACGT ATCTGCTATATGCTGATCCTGAGCGTTCAAATATACATGAAGTGAAAAGT ATAATATGCCGCAAAAGTTGACGTCTGGCTCGTGCAGGGTTGCAAGGTAA CTTCGCAATGCTGCTTTCAGCTGGTCATTCAAATCTTTTAGCACTGGCGT ATGTGCCTGGTTCTGACGTTTTGTGTTTTTGCAGCACTGGGGAGTTTTCT GTTTGGTTGCTGCTGAAAAGAGCCCCGAGTGCATCTTTTTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGCTTAC GATGTAGGGCGTAAGGCGTGGCGTCGCTCTTTGTTTGCTGATGTGGCTAC TCGTAAGGGTAGTATTTTGTCCCGCCGGCCATCACTCTTTCACACATGAC GTTGTACCTATGTAACTGTTGCGCTGCAAGCCGTAGACGTAAAGTTGAGG GCCTTGTTGGTGTTGGAACGTTTCGTACTTATTATCTACAGTACCCCCTA TCCCCCTCCGTCCTGGGCACCCCGACTACAGGTATGAAGTTAACGTTGAA CCCGACAGCGTCATCCCGGACGACATCTATCAAGCCACCCTTGATACTCA TGCGGGGGAGTGGGGCACGATAGTGTTGCCGCTGGACCAATTGACGCTTA CGGGAAGGGGGCAATATCGTGTGTACCAGCGCGCTTTGGAGAGGGCAGCG CTACACTCGATCGGGCTTTCTATTTCTGACGGCGTTGCCGGGCCGTTTCA AATGGATATTGCGTGGATATCCGCGATACAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1964:350..1530-

>mRNA_H-paniculata_contig1964.4990.1 ID=mRNA_H-paniculata_contig1964.4990.1|Name=mRNA_H-paniculata_contig1964.4990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1964:350..1530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCAGGATTCTGCGGGGCAAGACCGCAGCGAAGATTACGGCCGTTTAA
ACTGAAGGACTACACTGCCATCGAGATGAGAGTACGCACGGATGGAAGAC
TCGGGCAGGATTCTGCGGGGCAAGACCGCAGCGAAGATTACGGCCGTTTA
AACTGAAGGACTACACTGCCATCGAGATGAGAGTACGCACGGATGGAAGA
CTGTATGAAGTTAACGTTGAACCCGACAGCGTCATCCCGGACGACATCTA
TCAAGCCACCCTTGATACTCATGCGGGGGAGTGGGGCACGATAGTGTTGC
CGCTGGACCAATTGACGCTTACGGGAAGGGGGCAATATCGTGTGTACCAG
CGCGCTTTGGAGAGGGCAGCGCTACACTCGATCGGGCTTTCTATTTCTGA
CGGCGTTGCCGGGCCGTTTCAAATGGATATTGCGTGGATATCCGCGATAC
AAGTATGAAGTTAACGTTGAACCCGACAGCGTCATCCCGGACGACATCTA
TCAAGCCACCCTTGATACTCATGCGGGGGAGTGGGGCACGATAGTGTTGC
CGCTGGACCAATTGACGCTTACGGGAAGGGGGCAATATCGTGTGTACCAG
CGCGCTTTGGAGAGGGCAGCGCTACACTCGATCGGGCTTTCTATTTCTGA
CGGCGTTGCCGGGCCGTTTCAAATGGATATTGCGTGGATATCCGCGATAC
AA
back to top