mRNA_H-paniculata_contig1964.4991.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1964.4991.1
Unique NamemRNA_H-paniculata_contig1964.4991.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1964.4991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1964contigH-paniculata_contig1964:9800..10268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size471
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.1491053-CDS-H-paniculata_contig1964:9799..102011622929488.1491053-CDS-H-paniculata_contig1964:9799..10201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 9800..10201 +
1691480883.1933017-CDS-H-paniculata_contig1964:9799..102011691480883.1933017-CDS-H-paniculata_contig1964:9799..10201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 9800..10201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.1628432-UTR-H-paniculata_contig1964:10201..102681622929488.1628432-UTR-H-paniculata_contig1964:10201..10268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1964 10202..10268 +
1691480883.203284-UTR-H-paniculata_contig1964:10201..102681691480883.203284-UTR-H-paniculata_contig1964:10201..10268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1964 10202..10268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1964.4991.1prot_H-paniculata_contig1964.4991.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1964 9800..10201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1964.4991.1

>prot_H-paniculata_contig1964.4991.1 ID=prot_H-paniculata_contig1964.4991.1|Name=mRNA_H-paniculata_contig1964.4991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
VIKTAKLGQIKALRVAIVRGYKVYTASCTHRESSGNAESANQPIPCTYTT
HSKEFPRLSPTSGSSYPPAPKGRTQCPGVGATVVTVHPGKNELGKKPRST
EFLPCFVQHTCNADIGCTLSQSHHRVSCGNFHQ*
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mRNA from alignment at H-paniculata_contig1964:9800..10268+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1964.4991.1 ID=mRNA_H-paniculata_contig1964.4991.1|Name=mRNA_H-paniculata_contig1964.4991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=469bp|location=Sequence derived from alignment at H-paniculata_contig1964:9800..10268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAATAAAGACTGCGAAACTCGGCCAGATCAAAGCGTTACGTGTTGCTAT
CGTCCGGGGCTATAAGGTATACACAGCATCATGTACGCACCGAGAAAGCA
GCGGTAACGCAGAAAGCGCTAACCAGCCAATTCCTTGTACCTATACTACG
CACTCGAAGGAGTTCCCACGTTTATCGCCGACTTCTGGATCATCCTACCC
CCCCGCACCCAAAGGTCGTACACAATGTCCTGGGGTCGGTGCAACCGTAG
TAACAGTACACCCGGGGAAAAACGAACTTGGAAAAAAACCACGAAGCACA
GAATTTCTCCCTTGTTTCGTTCAACACACTTGCAACGCCGACATCGGGTG
CACCCTGTCCCAGTCGCACCACCGTGTTTCTTGCGGGAATTTCCACCAAT
AGACATAAGGTTAAAACTTGAAGGTTGGTTAACGCTCGTGCACAATATGG
GATTCACGACCTCGTAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1964:9800..10268+

>mRNA_H-paniculata_contig1964.4991.1 ID=mRNA_H-paniculata_contig1964.4991.1|Name=mRNA_H-paniculata_contig1964.4991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig1964:9800..10268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAATAAAGACTGCGAAACTCGGCCAGATCAAAGCGTTACGTGTTGCTAT
CGTCCGGGGCTATAAGGTATACACAGCATCATGTACGCACCGAGAAAGCA
GCGGTAACGCAGAAAGCGCTAACCAGCCAATTCCTTGTACCTATACTACG
CACTCGAAGGAGTTCCCACGTTTATCGCCGACTTCTGGATCATCCTACCC
CCCCGCACCCAAAGGTCGTACACAATGTCCTGGGGTCGGTGCAACCGTAG
TAACAGTACACCCGGGGAAAAACGAACTTGGAAAAAAACCACGAAGCACA
GAATTTCTCCCTTGTTTCGTTCAACACACTTGCAACGCCGACATCGGGTG
CACCCTGTCCCAGTCGCACCACCGTGTTTCTTGCGGGAATTTCCACCAAT
AGGTAATAAAGACTGCGAAACTCGGCCAGATCAAAGCGTTACGTGTTGCT
ATCGTCCGGGGCTATAAGGTATACACAGCATCATGTACGCACCGAGAAAG
CAGCGGTAACGCAGAAAGCGCTAACCAGCCAATTCCTTGTACCTATACTA
CGCACTCGAAGGAGTTCCCACGTTTATCGCCGACTTCTGGATCATCCTAC
CCCCCCGCACCCAAAGGTCGTACACAATGTCCTGGGGTCGGTGCAACCGT
AGTAACAGTACACCCGGGGAAAAACGAACTTGGAAAAAAACCACGAAGCA
CAGAATTTCTCCCTTGTTTCGTTCAACACACTTGCAACGCCGACATCGGG
TGCACCCTGTCCCAGTCGCACCACCGTGTTTCTTGCGGGAATTTCCACCA
ATAG
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