mRNA_H-paniculata_contig19627.4988.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19627.4988.1
Unique NamemRNA_H-paniculata_contig19627.4988.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19627.4988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19627contigH-paniculata_contig19627:3770..4173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19627.4988.1prot_H-paniculata_contig19627.4988.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19627 3770..4162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.0114613-CDS-H-paniculata_contig19627:3769..38691622929488.0114613-CDS-H-paniculata_contig19627:3769..3869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19627 3770..3869 -
1691480883.1444883-CDS-H-paniculata_contig19627:3769..38691691480883.1444883-CDS-H-paniculata_contig19627:3769..3869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19627 3770..3869 -
1622929488.0339358-CDS-H-paniculata_contig19627:4076..41621622929488.0339358-CDS-H-paniculata_contig19627:4076..4162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19627 4077..4162 -
1691480883.1539962-CDS-H-paniculata_contig19627:4076..41621691480883.1539962-CDS-H-paniculata_contig19627:4076..4162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19627 4077..4162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.0520604-UTR-H-paniculata_contig19627:4162..41731622929488.0520604-UTR-H-paniculata_contig19627:4162..4173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19627 4163..4173 -
1691480883.1629138-UTR-H-paniculata_contig19627:4162..41731691480883.1629138-UTR-H-paniculata_contig19627:4162..4173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19627 4163..4173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19627.4988.1

>prot_H-paniculata_contig19627.4988.1 ID=prot_H-paniculata_contig19627.4988.1|Name=mRNA_H-paniculata_contig19627.4988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MTGSAPSPRLEDEDELPTLPNKKRRCRSVKPRGSTSPRHCEIVSFMRNWV
KVYGESMPNRNV
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mRNA from alignment at H-paniculata_contig19627:3770..4173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19627.4988.1 ID=mRNA_H-paniculata_contig19627.4988.1|Name=mRNA_H-paniculata_contig19627.4988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=404bp|location=Sequence derived from alignment at H-paniculata_contig19627:3770..4173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGTCGACCATGACTGGAAGTGCACCATCTCCACGTCTTGAGGACGAA
GATGAACTCCCTACTCTTCCCAACAAGAAGAGGAGATGTCGAAGCGTGTA
AGTCCATGTTATACTGGTACTACTGTTCAACAGTTGTTGTGATAGCAGCC
CTCAACGGCGACGTTGTCGGTCGCTTCTAACCCATGGATAATTTCATGAT
GACTCAAACTGTTCGACGTGCTTGCTGCTACAAGGCTTGTGTCGTTAGCT
GATGCGATTTACTGCCTCTCCTCTGTCCTACTGTTTCGGGTCTACAATAA
TCAGGAAGCCCCGCGGGTCCACGTCCCCACGACACTGTGAGATTGTATCG
TTCATGCGCAATTGGGTCAAGGTCTACGGAGAGAGTATGCCAAATCGCAA
CGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig19627:3770..4173-

>mRNA_H-paniculata_contig19627.4988.1 ID=mRNA_H-paniculata_contig19627.4988.1|Name=mRNA_H-paniculata_contig19627.4988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig19627:3770..4173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGGAAGTGCACCATCTCCACGTCTTGAGGACGAAGATGAACTCCC
TACTCTTCCCAACAAGAAGAGGAGATGTCGAAGCGTATGACTGGAAGTGC
ACCATCTCCACGTCTTGAGGACGAAGATGAACTCCCTACTCTTCCCAACA
AGAAGAGGAGATGTCGAAGCGTGAAGCCCCGCGGGTCCACGTCCCCACGA
CACTGTGAGATTGTATCGTTCATGCGCAATTGGGTCAAGGTCTACGGAGA
GAGTATGCCAAATCGCAACGTAGAAGCCCCGCGGGTCCACGTCCCCACGA
CACTGTGAGATTGTATCGTTCATGCGCAATTGGGTCAAGGTCTACGGAGA
GAGTATGCCAAATCGCAACGTA
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