prot_H-paniculata_contig19623.4987.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19623.4987.1
Unique Nameprot_H-paniculata_contig19623.4987.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length197
Homology
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BLAST of mRNA_H-paniculata_contig19623.4987.1 vs. uniprot
Match: D8LKM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM3_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.180e-43
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0 
Query:    1 LVLVAPAFLYAMAVVAWLFEDQDIEFARELAPVSFAALCVHLFAAGEIPYLTFWEVVHYWFHAACEVLVANDYTRKIG 78
            +VLVAPAFLYAMAVV WL +D+DIEFARELAPVSFA+LCVHLFAAGEIPYLTFWEVVHYWFHAACEVLVANDYTRKIG
Sbjct:  111 IVLVAPAFLYAMAVVMWLSQDEDIEFARELAPVSFASLCVHLFAAGEIPYLTFWEVVHYWFHAACEVLVANDYTRKIG 188
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BLAST of mRNA_H-paniculata_contig19623.4987.1 vs. uniprot
Match: D8LKM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 8.530e-32
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0 
Query:  126 MRSGVPLVCLSLYLGTQSLSCLVYQGVTDCALKNSGTRHLNYSLGTLYVLWMLFRHLTGSNAKQV 190
            M SGVPLVCLSLYLGTQSLSCLVY+GVTDCALKNSGTRHLNYSLG LYV+WMLFRHLTGSNAKQV
Sbjct:    1 MSSGVPLVCLSLYLGTQSLSCLVYEGVTDCALKNSGTRHLNYSLGNLYVMWMLFRHLTGSNAKQV 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19623.4987.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKM3_ECTSI3.180e-4392.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKM2_ECTSI8.530e-3293.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 153..163
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 184..196
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 103..131
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..183
NoneNo IPR availableTMHMMTMhelixcoord: 2..19
NoneNo IPR availableTMHMMTMhelixcoord: 34..56
NoneNo IPR availableTMHMMTMhelixcoord: 77..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19623contigH-paniculata_contig19623:630..4644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19623.4987.1mRNA_H-paniculata_contig19623.4987.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19623 630..4644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19623.4987.1 ID=prot_H-paniculata_contig19623.4987.1|Name=mRNA_H-paniculata_contig19623.4987.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
LVLVAPAFLYAMAVVAWLFEDQDIEFARELAPVSFAALCVHLFAAGEIPY
LTFWEVVHYWFHAACEVLVANDYTRKIGGGVWGVFLTSVLMLIFWPTGWL
MLRRLRIKLNHPSRTSRFPNVGESAMRSGVPLVCLSLYLGTQSLSCLVYQ
GVTDCALKNSGTRHLNYSLGTLYVLWMLFRHLTGSNAKQVSRRPSP*
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