mRNA_H-paniculata_contig19623.4987.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19623.4987.1
Unique NamemRNA_H-paniculata_contig19623.4987.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19623.4987.1 vs. uniprot
Match: D8LKM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM3_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.180e-43
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 LVLVAPAFLYAMAVVAWLFEDQDIEFARELAPVSFAALCVHLFAAGEIPYLTFWEVVHYWFHAACEVLVANDYTRKIG 234
            +VLVAPAFLYAMAVV WL +D+DIEFARELAPVSFA+LCVHLFAAGEIPYLTFWEVVHYWFHAACEVLVANDYTRKIG
Sbjct:  111 IVLVAPAFLYAMAVVMWLSQDEDIEFARELAPVSFASLCVHLFAAGEIPYLTFWEVVHYWFHAACEVLVANDYTRKIG 188
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BLAST of mRNA_H-paniculata_contig19623.4987.1 vs. uniprot
Match: D8LKM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 8.530e-32
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:  376 MRSGVPLVCLSLYLGTQSLSCLVYQGVTDCALKNSGTRHLNYSLGTLYVLWMLFRHLTGSNAKQV 570
            M SGVPLVCLSLYLGTQSLSCLVY+GVTDCALKNSGTRHLNYSLG LYV+WMLFRHLTGSNAKQV
Sbjct:    1 MSSGVPLVCLSLYLGTQSLSCLVYEGVTDCALKNSGTRHLNYSLGNLYVMWMLFRHLTGSNAKQV 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19623.4987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKM3_ECTSI3.180e-4392.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKM2_ECTSI8.530e-3293.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19623contigH-paniculata_contig19623:630..4644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size591
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19623.4987.1prot_H-paniculata_contig19623.4987.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19623 630..4644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929487.8852694-CDS-H-paniculata_contig19623:629..7701622929487.8852694-CDS-H-paniculata_contig19623:629..770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 630..770 +
1691480883.0989356-CDS-H-paniculata_contig19623:629..7701691480883.0989356-CDS-H-paniculata_contig19623:629..770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 630..770 +
1622929487.9009907-CDS-H-paniculata_contig19623:2919..30101622929487.9009907-CDS-H-paniculata_contig19623:2919..3010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 2920..3010 +
1691480883.1098404-CDS-H-paniculata_contig19623:2919..30101691480883.1098404-CDS-H-paniculata_contig19623:2919..3010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 2920..3010 +
1622929487.9179223-CDS-H-paniculata_contig19623:3689..39381622929487.9179223-CDS-H-paniculata_contig19623:3689..3938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 3690..3938 +
1691480883.120813-CDS-H-paniculata_contig19623:3689..39381691480883.120813-CDS-H-paniculata_contig19623:3689..3938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 3690..3938 +
1622929487.9360805-CDS-H-paniculata_contig19623:4534..46441622929487.9360805-CDS-H-paniculata_contig19623:4534..4644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 4535..4644 +
1691480883.1342552-CDS-H-paniculata_contig19623:4534..46441691480883.1342552-CDS-H-paniculata_contig19623:4534..4644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19623 4535..4644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19623.4987.1

>prot_H-paniculata_contig19623.4987.1 ID=prot_H-paniculata_contig19623.4987.1|Name=mRNA_H-paniculata_contig19623.4987.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
LVLVAPAFLYAMAVVAWLFEDQDIEFARELAPVSFAALCVHLFAAGEIPY
LTFWEVVHYWFHAACEVLVANDYTRKIGGGVWGVFLTSVLMLIFWPTGWL
MLRRLRIKLNHPSRTSRFPNVGESAMRSGVPLVCLSLYLGTQSLSCLVYQ
GVTDCALKNSGTRHLNYSLGTLYVLWMLFRHLTGSNAKQVSRRPSP*
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mRNA from alignment at H-paniculata_contig19623:630..4644+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19623.4987.1 ID=mRNA_H-paniculata_contig19623.4987.1|Name=mRNA_H-paniculata_contig19623.4987.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4015bp|location=Sequence derived from alignment at H-paniculata_contig19623:630..4644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGCTGGTGGCGCCGGCTTTCTTGTACGCTATGGCCGTGGTGGCTTG
GCTATTCGAAGATCAAGACATCGAGTTTGCTAGGGAGCTGGCTCCTGTTT
CGTTCGCTGCGCTGTGCGTGCACCTCTTCGCGGCGGGGGAGGTGAGCAGG
GCAGGAAGAAAATAGTAATCCATTGTTATTGGTTATTTTCCATTGCCAGC
GAGTAATTGGAGTGTAAGAACATGTCGTGCTTTTTTCCTTCGTGAATGCA
AGAAATTGCGTCTGCCGAAAATCCATGTATTTTTATTGACTTGTTCACGG
GCACCAGGATGGAGGTACGTTTAGACTGGAGATAAACGGGACCGGGAGTA
CGGACAGGCTCTTCTGACGGCTATAGCTACATGTACGCTTACGCTTGCAC
GGAGGGTTTGTTTTATTACTGCTGTCCAACACAAACCATCGCACATCATC
GTGACCGCCTGTTAGATTTTCACCCAGAACAAGGGCACCACACCCGAAGA
AAGTGTAGGATACCTTGAAACAGTCACGAAACCCGAAATGGACACAGATG
AGCACATGTTCCCCCAGGCAGCGGGCGCCATGGCATATGACGCCCTGAGA
GATATAGGGGGAGTTAGTCGGCCGGGAGGGCTGCGATGGGTCGGGTGTCT
CATCTGTCCTTGTGAGGGAGCTCCCCGATAATTGGGTAACTTTCAGCGGT
CAACGATCAATCGGCAATCTTGGTGAAAATCGTTTCCTAGTCGTGATTGC
GGTGCCAATTTCAACTACTTGTTGGTCGGTTATGATTCGACACGTAGGAC
TGAGACAAGGCCGGGGAATTTTGTAGACATGCTCACCAGGTTGTAATTTG
TAGTGTCCACGGCGATGTGGGTTTCTATGAAGGGATGCGAAGGTGTGGTG
ATGGTGTACATTAATGTTATCTATATATATGATAATGTTGCGGTCGTTTC
ACGTTTGGGTTGCTGTTCCTGTTGGTGGTTAAGGGGATGTGTATGTGCCG
TGTGGAGAATCTTGGGCATTTTTTATTTTTGTGCTCCACCGCGGATATAT
ATATATATATATATATATATATATATATATTGTCGGATCCTGATAGAAAT
AGAATACCTGAAGGTTTATTGGCAGTTCTGATAATCCTGTTTATCAGAGA
TTTATCGAGTCGTGTTCTTTTGATTTCGTTAAATATTAATAGATGTGCGG
GCATTTATTTGTGCGTTCGCGCCATCGATTGCAGGTTGGAATATTTGTAA
TATCAGGGTATATATATATGTTGTATACAGTATTCGGTGGACTCGATTTT
ACGCTCCCACCTCCCGGCGAAGTAAAAAAAATGGATCCTGAAGACTTGCG
AACCCTACTTGAATTTCCCTGCCTAGCACAATAATAAACAAAACAGCCTA
AAATATTCTATACATCAGATAGAACAGAACAGAACAGAACAGAACAGAAT
AATAAAGGATATGTACCGTTCTAGAACACATTCTTCTAAGACAATCCGTG
CTGTTTTCTATTTACGATTTAGTCTGCACGAGGTAGCTTTCTAGTTGGTC
TGTTTGGTCTATATTAGGAACTATGCTGTACCGTGTTCGCCACGGAGTTC
TACAGCGACGACGAGCTGTTCTATGCAACGTGTGCGAAACACCGAAAGCT
CGAAATTGTAGAATGTGATCGGTCAGATCGACTGCTGGTATTTTTTGGGG
GTATGCATATTATTGTATGTTACGGTAAGCGATGGGCATTGTGACATCTT
TTGGATGGTTACGAGGCAGAGCACGTGGTCTTTTGTGTGCACATGTTTGT
GACTTGTATGTGACAGGTATATGGAGCGTGATCTTGAGGCCCGTCAGCAG
TCTGTCTCACAGGACAATGTTGCGTGGGTGCAATACTGTCGAGATCATCT
AGTATTAAAAAAATCTAGCCATGAATTCTTTCATGCATTTGACATTGAAC
AAGCCGTTCACTTTTCACGTGTCCGGATAGTTTGGACCATGTAAGGGTGA
AAAATCAACCAACCAACCAACCAACTAACTAACCTTACTTCTAAGTACTT
GGGATCTATTCAGAAACTGATAATTCAACCAACTGTTATGACTGTCTACT
AGGAATATCTCATGTCCAAGCTGTTGTCTAGAGACAATGAACACCCCCCC
CCCTCCCTCCTCCCTCCTGAATCGGAGCTCATCGTATGCATCATCATTAA
TCCATCCAATACCTTCTGTGGTGCACCCCGTTTTCCTCTCCCCTACCCCT
GTCTGTTTTATTGCGGCCAATTTCTCTTCCCCTCGTTCAGATTCCTTACC
TGACGTTCTGGGAGGTGGTGCACTACTGGTTTCACGCCGCCTGCGAAGTT
CTCGTGGCCAACGACTACACCAGGAAGATAGGTGAAGGAGCCAGCCAGCC
GGCCTCGACAACAATGGATAATGGCTCATTATCGCTTACTTGATTGCCTC
TCCTGTATTTGCGCTTGACCCCCCGAAACAAGAATTTACAAGAGTTTCTT
GTGTATGAGCGTCGGGGGGGCGGGGCGAGGGGTGGCTGGTGCTGTCGTTA
CAAAATCACTGTTTTTTTTTCCCGATACCAAACAAACAATCAATCAATAA
ATCAATCAACTAGTTCATTTATCAGCCAACTACCTAATTTTTTTCTACTA
TATAAATATATATACATAGAGGAACAAAGAAATATATACGCCGATCAAAA
GTAAATGTCGAGAAAATAAGTTGCATTCAGTCCTCTCGGGCAGAACGAGT
CATGCCACCAACGTGCCTACCTGCTTGCCTTCCTTTCTGCCTGTGCTGTC
TTCTACTTGTCAGTACTGGACTGGACTGGACTGTCAATATCTCATCTGCC
TCAACAGTGATGACGTAATCATATCATCAGCATGCATTCTTCTGGTGTTT
TGAAGAAATAATTACTTGATGAAAAATATATACAATGATAATTGGTGCTA
AAAAGGTGAGTTGAAAATTGGTCACTCCTCTTGTGCCGCTTTATGTCATC
TGTCATCCACCATACTGTATTGCCCTCTCTCCTGCAAACAATCGAAACAA
CGAACCATAGGCGGCGGCGTGTGGGGCGTGTTCCTCACGTCCGTCCTGAT
GCTGATATTCTGGCCGACGGGGTGGCTGATGCTCCGCCGCTTGAGAATCA
AGCTTAACCACCCTTCGAGAACTTCGCGGTTCCCTAACGTGGGAGAGTCG
GCCATGAGATCTGGCGTGCCTCTGGTGTGTCTGAGCCTGTACCTCGGTAC
GCAGAGCCTGAGCTGCCTCGTGTATCAGGGAGTTACTGATTGTGCTCTCA
AAAATTCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
TGTAGGTGCGGTGGATATTTTACAGATGTTGAATTTGTTTTTTTTTCATG
AAAAAAAAAGCGATTTGGGGGACATGTTTGACTCAAGCTTTCGAAACTTC
TTCGAGAGCTGTTTGAGCATTATGTGAACATGCTGGTCATATTTTTTAGC
ACTGGTCGCCAGGAAATGAATGTACGTTTTATACGATCTGGTCATACTAT
TGCACGATATGTCTTCGGGTAAGTATATGTTTGGTAGTGGTGATTACCTG
CTATTACTGATGGTTATTCACTGCTGCTCGTCAGGAAATGTTTGTGTTGT
GTTCATCGGTCATTATTCAGTACTCGTGGTGAGGAAATATATGTTTTGAT
CGTTAGGAGGTCCGGGCCCCAATGAGTTGAACAAACAAACAAACACAAGG
AGTATTTCACATCCATCGGGGAGCTCTTGCTATATTTTCAACTGTGGACC
CCCTACCGTCCCCCCCCCCCCCCCCGGTCGAACACACAACACGCAACCTT
TGGTTGTGTGTCGTCTGCTTGCATATTCTTGTTGACGTGCTGGAATATTC
CCCAGGTACCCGCCACCTTAACTACAGCCTTGGCACCCTGTACGTGCTGT
GGATGCTGTTTAGACACCTCACGGGCAGCAACGCCAAACAGGTTAGCCGC
CGCCCATCTCCCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19623:630..4644+

>mRNA_H-paniculata_contig19623.4987.1 ID=mRNA_H-paniculata_contig19623.4987.1|Name=mRNA_H-paniculata_contig19623.4987.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig19623:630..4644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGCTGGTGGCGCCGGCTTTCTTGTACGCTATGGCCGTGGTGGCTTG
GCTATTCGAAGATCAAGACATCGAGTTTGCTAGGGAGCTGGCTCCTGTTT
CGTTCGCTGCGCTGTGCGTGCACCTCTTCGCGGCGGGGGAGCTGGTGCTG
GTGGCGCCGGCTTTCTTGTACGCTATGGCCGTGGTGGCTTGGCTATTCGA
AGATCAAGACATCGAGTTTGCTAGGGAGCTGGCTCCTGTTTCGTTCGCTG
CGCTGTGCGTGCACCTCTTCGCGGCGGGGGAGATTCCTTACCTGACGTTC
TGGGAGGTGGTGCACTACTGGTTTCACGCCGCCTGCGAAGTTCTCGTGGC
CAACGACTACACCAGGAAGATAGATTCCTTACCTGACGTTCTGGGAGGTG
GTGCACTACTGGTTTCACGCCGCCTGCGAAGTTCTCGTGGCCAACGACTA
CACCAGGAAGATAGGCGGCGGCGTGTGGGGCGTGTTCCTCACGTCCGTCC
TGATGCTGATATTCTGGCCGACGGGGTGGCTGATGCTCCGCCGCTTGAGA
ATCAAGCTTAACCACCCTTCGAGAACTTCGCGGTTCCCTAACGTGGGAGA
GTCGGCCATGAGATCTGGCGTGCCTCTGGTGTGTCTGAGCCTGTACCTCG
GTACGCAGAGCCTGAGCTGCCTCGTGTATCAGGGAGTTACTGATTGTGCT
CTCAAAAATTCAGGCGGCGGCGTGTGGGGCGTGTTCCTCACGTCCGTCCT
GATGCTGATATTCTGGCCGACGGGGTGGCTGATGCTCCGCCGCTTGAGAA
TCAAGCTTAACCACCCTTCGAGAACTTCGCGGTTCCCTAACGTGGGAGAG
TCGGCCATGAGATCTGGCGTGCCTCTGGTGTGTCTGAGCCTGTACCTCGG
TACGCAGAGCCTGAGCTGCCTCGTGTATCAGGGAGTTACTGATTGTGCTC
TCAAAAATTCAGGTACCCGCCACCTTAACTACAGCCTTGGCACCCTGTAC
GTGCTGTGGATGCTGTTTAGACACCTCACGGGCAGCAACGCCAAACAGGT
TAGCCGCCGCCCATCTCCCTAGGTACCCGCCACCTTAACTACAGCCTTGG
CACCCTGTACGTGCTGTGGATGCTGTTTAGACACCTCACGGGCAGCAACG
CCAAACAGGTTAGCCGCCGCCCATCTCCCTAG
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