mRNA_H-paniculata_contig19622.4986.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19622.4986.1
Unique NamemRNA_H-paniculata_contig19622.4986.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19622.4986.1 vs. uniprot
Match: D8LQ83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ83_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.640e-34
Identity = 172/376 (45.74%), Postives = 198/376 (52.66%), Query Frame = 3 
Query:  300 CSCLTVVDGTGALEFNTEDVAALLTLALRRLRPFEPLAARLAAVAATHEKETKLAVYRGMQEDEPETGDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDTVADGDSVGPERVGGGGLFARASSPVFGVSSGGAVDELVAGTAXXXXXXXXXATSG-------------------LNADEASDLLEYVAAARFVAQLLSEPVVEAGIAAGRWVHTERLAEHVKKLAEADEKEPIAAAAGSSDLSSLVSRGQRNVSAGERGRGSLSSASDMLCLGALANVEELGARMAQQARFAPALEALLKGELRNALRRGQGRQRRLMSRLQPPTGPVVPRVIAFPMTRPCCCFVAY--GVG 1364
            C C++V+D  GALEFNTEDVAALLTLAL R+ PF PLAAR+   A       K A + G  +D  E  D                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         S G       G      S  F V  G    +  AG+          A+                     L  DE++DLLE+VAAARF+AQLL+EPVV AG+A GRW    RL+E V+KLAE                                     SS S+MLCLGALA+V+ LG  MAQQAR+APALEA+LK ELR ALR GQG +RR+  RLQPP  P    V +FPM  P C  V Y  GVG
Sbjct:  432 CGCVSVLDDKGALEFNTEDVAALLTLALGRVHPFMPLAARITLAA-------KEAGWDGCGDDGDEALDARVWAAVQEYTLECRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAG-------GAVDELPSSDFAVKGGEGEAKADAGSDGARASVADLASPSVPGSRGSVSEENGSAAGLELTVDESADLLEFVAAARFIAQLLAEPVVAAGVAGGRWSCAMRLSEQVRKLAEXX------------XXXXXXXXXXXXXXXXXXXXPPTSSLSNMLCLGALADVQGLGLAMAQQARYAPALEAVLKRELRQALRGGQGLKRRIKHRLQPPGAP---DVFSFPMITPACQLVHYEGGVG 778
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BLAST of mRNA_H-paniculata_contig19622.4986.1 vs. uniprot
Match: A0A6H5KS39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS39_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.820e-34
Identity = 187/424 (44.10%), Postives = 220/424 (51.89%), Query Frame = 3 
Query:  189 PVSTGLTVLVPGRVAATPAV----AALTRGVKKHQQQKKKG-CSCLTVVDGTGALEFNTEDVAALLTLALRRLRPFEPLAARLAAVAATHEKETKLAVYRGMQEDEPETGDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------AGDTVADGDSVGPERVGGGGLFARAS-----SPVFGVSSGGAVDELVAGTAXXXXXXXXXATSGLNADEASDLLEYVAAARFVAQLLSEPVVEAGIAAGRWVHTERLAEHVKKLAEADEKEPIAAAAGSSDLSSLVSRGQRNVSAGERGRGSLSSASDMLCLGALANVEELGARMAQQARFAPALEALLKGELRNALRRGQGRQRRLMSRLQPPTGPVVPRVIAFPMTRPCCCFVAY-GVGG 1367
            P +  L+V+VPGR A         AA    V       ++G C C++V+D  GALEFNTEDVAALLTLAL R+ PF PLAAR+   A       K A + G  +D  E  D                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    +G  V  G+  G  +   G   ARAS     SP    S G   +E               A   L  DE++DLLE+VAAARF+AQLL+EPVV AG+A GRW    RL+E V+KLAE                           +A        SS S+MLCLGALA+V+ LG  MAQQAR+APALEA LK ELR ALR GQG +RR+  RLQ P  P    V +FPM  P C  + Y GV G
Sbjct:  630 PTAAALSVIVPGRAALLRQQGLLDAAWGSSVTAQAATAERGLCGCVSVLDDKGALEFNTEDVAALLTLALGRVHPFMPLAARITVAA-------KEAGWDGCGDDGDEALDARVWAAVQEYTLEGRRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAADKLPSSGFAVKGGE--GEAKADAGSDGARASVADLASPSVPGSRGSVSEE-----------NGSAAGLELTVDESADLLEFVAAARFIAQLLAEPVVAAGVAGGRWSCAMRLSEQVRKLAE-------------EXXXXXXXXXXXXXTAPPT-----SSLSNMLCLGALADVQGLGLAMAQQARYAPALEAALKRELRQALRGGQGLKRRIKHRLQLPGAP---DVFSFPMITPACQLIHYEGVVG 1012
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19622.4986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ83_ECTSI2.640e-3445.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS39_9PHAE2.820e-3444.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19622contigH-paniculata_contig19622:520..3061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2542
Cds size1251
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19622.4986.1prot_H-paniculata_contig19622.4986.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19622 645..1895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929487.7935205-UTR-H-paniculata_contig19622:519..6441622929487.7935205-UTR-H-paniculata_contig19622:519..644Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19622 520..644 +
1691480883.071357-UTR-H-paniculata_contig19622:519..6441691480883.071357-UTR-H-paniculata_contig19622:519..644Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19622 520..644 +
1622929487.838928-UTR-H-paniculata_contig19622:1895..30611622929487.838928-UTR-H-paniculata_contig19622:1895..3061Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19622 1896..3061 +
1691480883.0900848-UTR-H-paniculata_contig19622:1895..30611691480883.0900848-UTR-H-paniculata_contig19622:1895..3061Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19622 1896..3061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929487.8177438-CDS-H-paniculata_contig19622:644..18951622929487.8177438-CDS-H-paniculata_contig19622:644..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19622 645..1895 +
1691480883.0811148-CDS-H-paniculata_contig19622:644..18951691480883.0811148-CDS-H-paniculata_contig19622:644..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19622 645..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19622.4986.1

>prot_H-paniculata_contig19622.4986.1 ID=prot_H-paniculata_contig19622.4986.1|Name=mRNA_H-paniculata_contig19622.4986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=417bp
MNATAETSAFAAMVPPHDGDYPVSTGLTVLVPGRVAATPAVAALTRGVKK
HQQQKKKGCSCLTVVDGTGALEFNTEDVAALLTLALRRLRPFEPLAARLA
AVAATHEKETKLAVYRGMQEDEPETGDDEGEDDSSDEGRDDGLDARIWTA
VQQHVAESRASVAAAAANAASASASVSAAGDTVADGDSVGPERVGGGGLF
ARASSPVFGVSSGGAVDELVAGTAAGGGESEDIATSGLNADEASDLLEYV
AAARFVAQLLSEPVVEAGIAAGRWVHTERLAEHVKKLAEADEKEPIAAAA
GSSDLSSLVSRGQRNVSAGERGRGSLSSASDMLCLGALANVEELGARMAQ
QARFAPALEALLKGELRNALRRGQGRQRRLMSRLQPPTGPVVPRVIAFPM
TRPCCCFVAYGVGGFM*
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mRNA from alignment at H-paniculata_contig19622:520..3061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19622.4986.1 ID=mRNA_H-paniculata_contig19622.4986.1|Name=mRNA_H-paniculata_contig19622.4986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2542bp|location=Sequence derived from alignment at H-paniculata_contig19622:520..3061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTCTTGTTGAACCTATGCACGTGTGAGGCACCTGGGGAGGATGACGAG
GAGGAGGAGGAGGAAGCGACAAGTGGAGAACACGATACCGTCGATGATGA
TGTGTTGCCAGGTGGCGGCACGGAGATGAACGCCACAGCGGAAACGTCGG
CTTTTGCTGCTATGGTACCACCACACGATGGCGACTACCCTGTCTCCACG
GGGCTAACCGTGCTAGTGCCCGGCCGAGTCGCGGCGACGCCGGCGGTGGC
TGCGCTTACCCGAGGAGTTAAAAAACACCAGCAGCAGAAGAAGAAGGGGT
GTTCGTGCCTGACCGTGGTGGACGGGACGGGCGCGCTCGAGTTCAATACC
GAGGATGTGGCCGCCCTGCTCACCCTGGCTCTCCGCCGCTTGCGCCCCTT
CGAGCCGTTGGCCGCCCGCCTGGCCGCCGTTGCAGCCACGCACGAGAAGG
AAACGAAATTAGCAGTGTACAGAGGCATGCAGGAAGACGAACCGGAGACT
GGTGACGACGAAGGCGAGGACGACTCAAGTGATGAGGGGCGTGATGATGG
CCTGGATGCTCGAATCTGGACCGCTGTTCAACAGCACGTCGCCGAATCTC
GGGCGTCGGTGGCGGCCGCGGCCGCTAACGCCGCTTCTGCGAGTGCATCC
GTTTCGGCCGCAGGCGATACCGTGGCCGACGGTGATTCAGTAGGTCCTGA
GAGAGTAGGAGGAGGGGGTCTTTTCGCCCGAGCGAGTTCTCCAGTCTTCG
GTGTCAGCAGCGGGGGTGCTGTGGATGAACTGGTAGCTGGCACGGCGGCG
GGTGGAGGGGAATCAGAGGATATTGCCACTTCGGGGCTCAACGCAGACGA
GGCTTCGGATTTGCTGGAGTACGTGGCAGCCGCCCGGTTTGTGGCGCAGC
TTTTGTCGGAGCCTGTGGTGGAAGCCGGGATCGCTGCGGGACGGTGGGTG
CACACGGAGCGCCTAGCCGAGCATGTGAAGAAGCTTGCCGAAGCTGACGA
GAAGGAGCCGATCGCAGCAGCAGCGGGATCTTCGGATTTATCGTCGTTGG
TGTCGCGTGGTCAGAGAAACGTCTCTGCCGGGGAGCGGGGGAGAGGGAGC
TTATCGTCCGCGAGCGACATGCTCTGTCTCGGGGCGCTCGCGAATGTCGA
GGAGCTTGGGGCGCGCATGGCTCAGCAGGCGCGCTTCGCGCCTGCCCTAG
AGGCTTTGCTAAAGGGGGAGCTGAGGAACGCGCTGAGGAGAGGCCAGGGC
AGGCAGAGGCGGCTTATGAGCCGCCTTCAGCCGCCCACGGGTCCTGTGGT
GCCCCGGGTAATTGCGTTCCCCATGACACGGCCGTGCTGTTGCTTCGTTG
CGTACGGCGTCGGCGGTTTTATGTGAATGGAGAGGACGTGTTGGAATAAT
GGCCGAAGGGCGACGTAAGCATGATGTACTTCGGTGTGTGCAACCATAGG
CCATGTGCCTCGCTCTGTTGTGCAGGAGAAGGAGTGTGTGGACAGATGGA
ATCTGTTTTGTACCGTGTGCATCTCCACCCGACACAATGCTATGGCTTTC
GTTGTAGGTCGGAGAGGTTTTCGAGGGGAAGGTTATTAAGAGGGCTTGGA
CCACGCGGGCGAGGGTGTACTGTGCATCCGTTGGCATCGACTTTTGTTCG
AGTTTTGGAAGGGCTTGCTGAATACAGATGCAGCGTGAGGTCGATGCAAG
GCGTTTCGTCGAATTTGTGAGAAGACACCTTGGTGATGAAGCTGAGGAGG
GTGAGGGAGACCGACGGGGGGAGGGTGAAATGGGAGGGCATTGTCAAGCC
AGAAAATGCGACTCGGGCGTGGCGGCGGGGCATGGAGACACGACGAAACA
CATCTTACAGCATAGTTTGGAAGCTAGACTGCAACATGTACGGTGTGATT
GATCAATGAGATCTGGATTGTTGTTTCTGTTGTTGTTGTTGTTGTTGTTG
GTGGTGGTGGTGTCGCTCGTTTTCTTCCTAGGGGTTATACGTGAGCGGGG
GCGGGCGGTACGAGTGGTACATGCTTTTATGATGGATAAAGCCCTGTGTC
ATGTCAAGGTTCAAGGCTTTCGGCTCGGCTGACTATGGTTGGCCGTTTGT
GTTCCTCGTATTTGGTGTTTGTGTTGGGAGGGCAGGGGGGTCGAGGGGAG
GGTGAATATGAGTGGCATGACTGTGTGACTTGGAAAAGAAAAAGAAAAAA
GGAGCAGAAAATGGAATGGTCGTATTCTAGTGCATGCGTCGTGTTTTGTC
GAGAGTCCATATCCTATGTTGATAGATGTGGCGTTTTTTTAGCGAGAATT
TATGGATCCGTCTGTATGCCAATCGATGAGTTTTGTTCAATTTTTTCCGT
TGGCATGGGGGGATGGGCAACCCGTGCCCTCCAAGAGAGGCATTAGAGTT
TTGACTGTGCTGTGTTGTGTATGTCTCCCGTATATCAATCATGCGACGGA
CTGAGAGGAATGTGGCATGGAGGTGCTGTAGCTTTTTTTCTGAGCATTAC
AGTGGAAAAGGATGGGTGTGTCCGCGGCGTGCGCGTGCGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig19622:520..3061+

>mRNA_H-paniculata_contig19622.4986.1 ID=mRNA_H-paniculata_contig19622.4986.1|Name=mRNA_H-paniculata_contig19622.4986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at H-paniculata_contig19622:520..3061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGCCACAGCGGAAACGTCGGCTTTTGCTGCTATGGTACCACCACA
CGATGGCGACTACCCTGTCTCCACGGGGCTAACCGTGCTAGTGCCCGGCC
GAGTCGCGGCGACGCCGGCGGTGGCTGCGCTTACCCGAGGAGTTAAAAAA
CACCAGCAGCAGAAGAAGAAGGGGTGTTCGTGCCTGACCGTGGTGGACGG
GACGGGCGCGCTCGAGTTCAATACCGAGGATGTGGCCGCCCTGCTCACCC
TGGCTCTCCGCCGCTTGCGCCCCTTCGAGCCGTTGGCCGCCCGCCTGGCC
GCCGTTGCAGCCACGCACGAGAAGGAAACGAAATTAGCAGTGTACAGAGG
CATGCAGGAAGACGAACCGGAGACTGGTGACGACGAAGGCGAGGACGACT
CAAGTGATGAGGGGCGTGATGATGGCCTGGATGCTCGAATCTGGACCGCT
GTTCAACAGCACGTCGCCGAATCTCGGGCGTCGGTGGCGGCCGCGGCCGC
TAACGCCGCTTCTGCGAGTGCATCCGTTTCGGCCGCAGGCGATACCGTGG
CCGACGGTGATTCAGTAGGTCCTGAGAGAGTAGGAGGAGGGGGTCTTTTC
GCCCGAGCGAGTTCTCCAGTCTTCGGTGTCAGCAGCGGGGGTGCTGTGGA
TGAACTGGTAGCTGGCACGGCGGCGGGTGGAGGGGAATCAGAGGATATTG
CCACTTCGGGGCTCAACGCAGACGAGGCTTCGGATTTGCTGGAGTACGTG
GCAGCCGCCCGGTTTGTGGCGCAGCTTTTGTCGGAGCCTGTGGTGGAAGC
CGGGATCGCTGCGGGACGGTGGGTGCACACGGAGCGCCTAGCCGAGCATG
TGAAGAAGCTTGCCGAAGCTGACGAGAAGGAGCCGATCGCAGCAGCAGCG
GGATCTTCGGATTTATCGTCGTTGGTGTCGCGTGGTCAGAGAAACGTCTC
TGCCGGGGAGCGGGGGAGAGGGAGCTTATCGTCCGCGAGCGACATGCTCT
GTCTCGGGGCGCTCGCGAATGTCGAGGAGCTTGGGGCGCGCATGGCTCAG
CAGGCGCGCTTCGCGCCTGCCCTAGAGGCTTTGCTAAAGGGGGAGCTGAG
GAACGCGCTGAGGAGAGGCCAGGGCAGGCAGAGGCGGCTTATGAGCCGCC
TTCAGCCGCCCACGGGTCCTGTGGTGCCCCGGGTAATTGCGTTCCCCATG
ACACGGCCGTGCTGTTGCTTCGTTGCGTACGGCGTCGGCGGTTTTATGTG
AATGAACGCCACAGCGGAAACGTCGGCTTTTGCTGCTATGGTACCACCAC
ACGATGGCGACTACCCTGTCTCCACGGGGCTAACCGTGCTAGTGCCCGGC
CGAGTCGCGGCGACGCCGGCGGTGGCTGCGCTTACCCGAGGAGTTAAAAA
ACACCAGCAGCAGAAGAAGAAGGGGTGTTCGTGCCTGACCGTGGTGGACG
GGACGGGCGCGCTCGAGTTCAATACCGAGGATGTGGCCGCCCTGCTCACC
CTGGCTCTCCGCCGCTTGCGCCCCTTCGAGCCGTTGGCCGCCCGCCTGGC
CGCCGTTGCAGCCACGCACGAGAAGGAAACGAAATTAGCAGTGTACAGAG
GCATGCAGGAAGACGAACCGGAGACTGGTGACGACGAAGGCGAGGACGAC
TCAAGTGATGAGGGGCGTGATGATGGCCTGGATGCTCGAATCTGGACCGC
TGTTCAACAGCACGTCGCCGAATCTCGGGCGTCGGTGGCGGCCGCGGCCG
CTAACGCCGCTTCTGCGAGTGCATCCGTTTCGGCCGCAGGCGATACCGTG
GCCGACGGTGATTCAGTAGGTCCTGAGAGAGTAGGAGGAGGGGGTCTTTT
CGCCCGAGCGAGTTCTCCAGTCTTCGGTGTCAGCAGCGGGGGTGCTGTGG
ATGAACTGGTAGCTGGCACGGCGGCGGGTGGAGGGGAATCAGAGGATATT
GCCACTTCGGGGCTCAACGCAGACGAGGCTTCGGATTTGCTGGAGTACGT
GGCAGCCGCCCGGTTTGTGGCGCAGCTTTTGTCGGAGCCTGTGGTGGAAG
CCGGGATCGCTGCGGGACGGTGGGTGCACACGGAGCGCCTAGCCGAGCAT
GTGAAGAAGCTTGCCGAAGCTGACGAGAAGGAGCCGATCGCAGCAGCAGC
GGGATCTTCGGATTTATCGTCGTTGGTGTCGCGTGGTCAGAGAAACGTCT
CTGCCGGGGAGCGGGGGAGAGGGAGCTTATCGTCCGCGAGCGACATGCTC
TGTCTCGGGGCGCTCGCGAATGTCGAGGAGCTTGGGGCGCGCATGGCTCA
GCAGGCGCGCTTCGCGCCTGCCCTAGAGGCTTTGCTAAAGGGGGAGCTGA
GGAACGCGCTGAGGAGAGGCCAGGGCAGGCAGAGGCGGCTTATGAGCCGC
CTTCAGCCGCCCACGGGTCCTGTGGTGCCCCGGGTAATTGCGTTCCCCAT
GACACGGCCGTGCTGTTGCTTCGTTGCGTACGGCGTCGGCGGTTTTATGT
GA
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