mRNA_H-paniculata_contig1962.4985.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI) HSP 1 Score: 629 bits (1621), Expect = 1.480e-209 Identity = 415/850 (48.82%), Postives = 524/850 (61.65%), Query Frame = 1
Query: 4 AEHTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAMSDVSDDKAGGREHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPG--LRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEE-MVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTLAEHANRYARGLVERWMGQTELQKKRSGGLTAAIAGE------------------EEEKNRPEGLAVLLTLCGRLTEGQVLLGELLADNHAVVPDAATGAAATAVDGAAPNASGGRSNDEETQ--AESQALPSPXXXXXXXXXXXXXXXXXXXXXXX-AHLKASSAAAEVSRQVEAFSAEAXXXXXXXXXXXXRSRHRAAVSSNLAHESV-FDNEADFLAKSAAEQAERGGSGGGDGYFLDAAGRYLSGFASSFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGP-------------TSIVRYANLMEGQYTVVLFDLETTGLNADNHRIIQIAAKVMGSNDPNHTFSAYVDPEDVSVSTYIQELTGITPKILAENKAQCFREVWPQFSGWLAGVDGERASAAXXXXXXXXXXGGVVLVAHNAKFDHSFLLAEVIRGEFGRFAMGK-IGIVSILDTLPLLKDQGLWRQSNREVDLPIRPARFSLGVVFQHLYGKEMPGSHTALGDVIGLEGVLSAPGISDRWRSVASEQPSYQIPVPRSTAELQAAMDATVAQKAQSKSRSRRQYW 2436
A+H LY+SATPIPRSLTLAL+GDME+SQ+REMP+G+ +I+TTL+PV +A +V++RLK R +D ++ R+H+AS TERYD LV++LGEDRV+LLHG+M++A+KNK L+EF+ GG G LRVLV+TSIIEVGVDVPRAGVCVVENAEMFGLSQLHQ+RGRLGRTDRGK S + QQP P E+ +K+ TSHCILLYGP++G+ ATERLKA+R TRDGFLLAERDLALRGPGEVLG+RQKGYIEG+ KVADL +QG+LAEHA++ AR LVE W + + AA +G +EE+ RPE L +LL LCG + + LL + P A G AA G + E + A +A P A +SS+A + + + EA + A S + +V FD+EADFL KSA+E AE D YLSGF SFAPXXXXXXXXXXXXXXXXXXXXXX P GP +I+R A+L EG +TVV+ D+ETTGL A R+IQ+AAKV+GS +P H+F+ +VDP V V ++E+TGITP+ILA N A+ F +VWP+F+ WL+GV E + GGVV VAHNA+FDH FL EV R F RF MG+ +G+V I+D+L LK+ LWRQ + +P RP F LG VF+HLYG EMP +H A+GDV+GLE +LSAPGI++ WR VAS PS QIPVPRS AELQAA + + R++ W
Sbjct: 176 AQHVLYLSATPIPRSLTLALFGDMEISQIREMPRGTANIETTLIPVAKAKEVMDRLKGREDTD-DKSESSTRQHLASATERYDALVKELGEDRVTLLHGKMTSAEKNKRLSEFS-----GGEKGKGLRVLVSTSIIEVGVDVPRAGVCVVENAEMFGLSQLHQLRGRLGRTDRGKRERSTTAPTGSLQQPASPEEDPSQDKRQTSHCILLYGPDVGNDATERLKAVRKTRDGFLLAERDLALRGPGEVLGMRQKGYIEGKFKVADLARQGSLAEHASKRARRLVESWTPRGAAAAAAADAEEAAASGAPRVGGTVALKEGGAGADYDEERGRPESLGLLLVLCGLGADAKALLSGFA--SRTPPPGGADGDAAGVAAGXXXXXXXXXXREREAKEHAPQRATELPQSFPVAAATPDDVESLNTSTPAADAPPASSSSAPDFAARAEAEATAAVGVSGSRMTAGPGSSGKEPGPELAVPAAVYFDDEADFLEKSASEYAEMMEG-------QDEEDEYLSGF--SFAPXXXXXXXXXXXXXXXXXXXXXXSSGEVA---------PTGPPVGADGGASRGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGE-------GGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRTKADGW 992
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE) HSP 1 Score: 629 bits (1622), Expect = 4.750e-205 Identity = 415/853 (48.65%), Postives = 522/853 (61.20%), Query Frame = 1
Query: 4 AEHTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAMSD-------------VSDDKAGGREHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPG--LRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEE-MVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTLAEHANRYARGLVERWM-------GQTE----LQKKRSGGLTAAIAGE-----EEEKNRPEGLAVLLTLCGRLTEGQVLLGELLADNHAVVPDAATGAAATAVDGA-APNASGGRSNDEETQAESQALPSPXXXXXXXXXXXXXXXXXXXXXXX-AHLKASSAAAEVSRQVEAFSAEAXXXXXXXXXXXXRSRHRAAVSSNLAHESVFDNEADFLAKSAAEQAERGGSGGGDGYFLDAAGRYLSGFASSFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PPGP-TSIVRYANLMEGQYTVVLFDLETTGLNADNHRIIQIAAKVMGSNDPNHTFSAYVDPEDVSVSTYIQELTGITPKILAENKAQCFREVWPQFSGWLAGVDGERASAAXXXXXXXXXXGGVVLVAHNAKFDHSFLLAEVIRGEFGRFAMGK-IGIVSILDTLPLLKDQGLWRQSNREVDLPIRPARFSLGVVFQHLYGKEMPGSHTALGDVIGLEGVLSAPGISDRWRSVASEQPSYQIPVPRSTAELQAAMDATVAQKAQSKSRSRRQYW 2436
A+H LY+SATPIPRSLTLALYGDME+SQ+REMP+G+ +I+TTLVPV +A +V++RLK R +D ++ ++ R+H+AS TERYD LV++LGEDRV+LLHG+M++A+KN+ L+EF+ GG G LRVLV+TSIIEVGVDVPRAGVCVVENAEMFGLSQLHQ+RGRLGRTDRGK S + QQP P E+ +K+ TSHCILLYGP++G+ ATERLKA+R TRDGFLLAERDLALRGPGEVLG+RQKGYIEG+ KVADL +QG+LAEHA++ AR LVE W TE R GG A G +EE RPE L +LL LCG + + LL + +P AA G AA V G A + + + A +A P L ASS+ + + EA + + FD+EADFL KSA+E AE D YLSGF SFAP XXXXXXXXXXXXXXXXXXXXX P G +I+R A+L EG +TVV+ D+ETTGL A R+IQ+AAKV+GS +P H+F+ Y+DP V V ++E+TGITP+ILA N A+ F +VWP+F+ WL+GV E + GGVV VAHNA+FDH FL E+ R F RF MG+ +G+V I+D+L LK+ LWRQ + +P RP F LG VF+HLYG EMP +H A+GDV+GLE +LSAPGI++ WR VAS P+ QIPVPRS AELQAA + + R++ W
Sbjct: 562 AQHVLYLSATPIPRSLTLALYGDMEISQIREMPRGAANIETTLVPVAKAKEVMDRLKGREDTDDKARCGVFWVLPQINKSESSARQHLASATERYDALVKELGEDRVTLLHGKMTSAEKNRRLSEFS-----GGEKGKGLRVLVSTSIIEVGVDVPRAGVCVVENAEMFGLSQLHQLRGRLGRTDRGKRERSTTAPTGSLQQPATPEEDPSQDKRQTSHCILLYGPDVGNDATERLKAVRKTRDGFLLAERDLALRGPGEVLGMRQKGYIEGKFKVADLARQGSLAEHASKRARRLVESWTPRGAAAAADTEDAAASGAPRKGGTVALKEGGPGADCDEEGGRPESLGLLLVLCGLGADAEALLSGFA--SRTPLPGAADGDAAGVVAGGEADRGAEAIEREAKEHAPERATEFPQSLPVAAATPDGVESLITSTPAADPPLAASSSTPDFVVRAEATAGVGGVLDSRTTTGPDSRSKEPGPELAVPAAVYFDDEADFLEKSASEYAEMMED-------QDEEDEYLSGF--SFAPPLQPXXXXXXXXXXXXXXXXXXXXXFSGGVAPTGTPVGGXXGAPSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGE-------GGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVPRSLAELQAATNIAARSRKPPARRTKADGW 1391
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA) HSP 1 Score: 270 bits (691), Expect = 8.900e-73 Identity = 288/905 (31.82%), Postives = 393/905 (43.43%), Query Frame = 1
Query: 10 HTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAMSD--------VSDDKAGG---REHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYI---EGRLKVADLTQQGTLAEHANRYARGLVERWMGQTELQKKRSGG---------LTAAI----AGEEEEKN---------RPEGLA--VLLTLCGRLTEGQ---------------VLLGELLADNHAVVPDAATGAAATAVDGAAPNASGGRSNDEETQAESQALPSPXXXXXXXXXXXXXXXXXXXXXXXAHLKASSA-------------------------------------------------------------------------AAEVSRQVEAFSAEAXXXXXXXXXXXXRSRHRAAVSSNLAHESVFDNEADFLAKSAAEQAERGGSGGGDGYF--LDAAGRYLSGFASSFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGPTSIVRYANLMEGQYTVVLFDLETTGLNADNHRIIQIAAKVM-----GSNDPNHTFSAYVDPEDVSVSTYIQELTGITPKILAENKAQCFREVWPQFSGWLAGVDGERASAAXXXXXXXXXXGG--VVLVAHNAKFDHSFLLAEVIRGEFGRFAMGKIGIVSILDTLPLLKDQGLWRQSNREVDLPIRPARFSLGVVFQHLYGKEMPGSHTALGDVIGLEGVLSAPGISDRWRSVAS 2319
H LYMSATP PR+L+L +GD++V+ LRE P+G+ T + V+R +++ + A +D V + +GG R H+AS R+ L E LGE+RV LLHGRM+AA+KN+ L FA + G P +RVLVAT+IIEVGVD+P A VCV+ENAE FGLSQLHQ+RGR+GR+ + A + HC+LLY + G+ A RLK + T DGF +AE DL LRGPGE+LGVRQKG++ G +V DL + L A+ +AR LVE ++ G L +A+ AG E + + RP A V L + G G V+ G L HA+ DAA ++ G +AS G E Q + AL XXXXXXXXXXXXXXXXXXXXXXX +E + EA E + RAA F+N +D+ E S F L R G AP T + +L ++ V+ D+ETTG + R++QIAA V+ G+ H F+ Y DP +S IQ LTGITP++L A F + W QF WL A+AA G +VL+AHNA FDH FL+AE R G A+ GI + +D++ L+KD+ LWRQ+ + P L V+++L G+++ +H A+ DVI L V++ + DRWR +AS
Sbjct: 558 HVLYMSATPTPRTLSLTAFGDVDVALLREKPRGASQHVQTTLTVERVRAILDD-PATAHADKVFWVLPLVQEAPSGGTRRRAHLASAERRHASLAEALGEERVGLLHGRMTAAEKNRVLARFA----EPGSP-MRVLVATTIIEVGVDIPEARVCVIENAEQFGLSQLHQMRGRIGRSGXXXXXXXXXXXXXATARSDAAARAVEGAAAACHCVLLYHESAGEVAVRRLKVMSETTDGFAIAEEDLKLRGPGELLGVRQKGFLFGGAGGFRVCDLDKHAALVPPAHAHARRLVEAAGARSXXXXXXXXGDVRPLCALHLLSALFQSGAGAEAQGSSAQQAGGGKRPAIAANGVALPVKGARKAGSGXXXXXXXXXEQEQDVVRGVGLEVAHALGLDAAL-LSSEPTHGVGQHASDGGDATESRQLLAAALSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTSETTVVSEALRVELFIPERTSRALPTSATERAAXXXXXXXAWPFENLSDYAPADDEEDVVASTSDNDWLSFSELPPIPRQAGGLRLKAAPSASARGSKA------------------------------ADTPSLPPLDLTSEEHMFVVLDVETTGFSFAYDRVLQIAAAVLSVDGGGALQHGH-FNMYCDPAKY-ISAKIQGLTGITPQLLRSKGAVKFPQAWQQFQAWL------NAAAAQHKATNGNATSGTSIVLIAHNANFDHGFLVAETERAGLGSDAISSAGITAFVDSVALVKDRDLWRQAGMDP-----PPTNKLTDVYEYLEGRKVSDAHNAMADVIALATVVNGSVLRDRWREMAS 1412
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: W7TB29_9STRA (Atp-dependent dna helicase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB29_9STRA) HSP 1 Score: 251 bits (640), Expect = 1.260e-67 Identity = 258/829 (31.12%), Postives = 365/829 (44.03%), Query Frame = 1
Query: 10 HTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAM------------------------SDVSDDKAG--GRE--HVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLY---GPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTLAEHANRYARGLVERWMGQTELQKKRSGGLTAAIA-GEEEEKNRPEGLAVLLTLCGRLTEGQVLLGELLADNHAVVPDAATGAAATAVDGAAPNASGGRSNDEETQAESQALPSPXXXXXXXXXXXXXXXXXXXXXXXAHLKASSAAAEVSRQVEAFSAEAXXXXXXXXXXXXRSRHRAAVSSNLAHESVFDNEADFLAKSAAEQAERGGSGGGDGYFLDAAGRYLSGFASSFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGPTSIVRYANLMEGQYTVVLFDLETTGLNADNHRIIQIAAKVM-------------------------GSNDPNHTFSAYVDPEDVSVSTYIQELTGITPKILAENKAQCFREVWPQFSGWLAGVDGERASAAXXXXXXXXXXGGVVLVAHNAKFDHSFLLAEVIRGEFG-RFAMGKIGIVSILDTLPLLKDQGLWRQSNREVD-LPIRPARFSLGVVFQHLYGKEMPGSHTALGDVIGLEGVLSAPGISDRWRSVAS 2319
+ LYMSATPIPR+L L YGDMEVS+L E P + T++ P+ + ERL+ + + ++ ++K G G E + SVT+R+ +VE LGE+ V ++HGRM + K + L +F+ V RVLV+TS++EVGVDVP A VC+VE+AE FGLSQLHQ+RGR+GR G A +S AD +++++ T HC+L Y PN + A +RL ++ T DGF +AE+DL LRGPGEVLG RQ G+ RL DL + L + AN+ AR + + ++ G A+A G E EG+ LL R+ E + P +SG E Q ESQ PS XXXXXXXXXXXX S+ A S+ + S + + N A S+ G + Y F S P P P + +L T ++FD ETTGL A++ RIIQ+AAKV+ G + F+AYVDP + I E+TGI+ + L +A+ F EVWP F W+ V G + VVLVAHNA FDH L+ ++ R R + IV ++DTL + + +W S R D LPI+P F G ++++L ++ +H+A GDV+GLE +L P ++ +WRS S
Sbjct: 152 NVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVT-------RVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGR---GYA---VSAKAD---------RKVMDQLTECHCVLAYDDTSPNK-EKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRL--VDLAKHEGLLDEANQVARAHAD------SVVRREEGATVEAVAHGNVLEY---EGVETLL----RIFEAK------------------------------PPSSG-----ENIQRESQ--PSSXXXXXXXXXXXX-----------------------SKNKFLLEPTASPSSSMKLSMGGMSKKKPPTSLQKSKSAPIANACTAPAPSSISDLPPGWT----------TVTYGDRFEISTPPPSSGDEENEGGELTLMPGTEPVLSTRFSIDDL------PIPRVSI---DLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAVRGGKP---------------VVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIW--SRRSGDGLPIKPNTFRQGALYRYLLRDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGS 845
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: A0A4D9CQG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQG2_9STRA) HSP 1 Score: 248 bits (634), Expect = 1.670e-65 Identity = 253/828 (30.56%), Postives = 360/828 (43.48%), Query Frame = 1
Query: 10 HTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAM------------------------SDVSDDKAG--GRE--HVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLY---GPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTLAEHANRYARGLVERWMGQTELQKKRSGGLTAAIAGEEEEKNRPEGLAVLLTLCGRLTEGQVLLGELLADNHAVVPDAATGAAATAVDGAAPNASGGRSNDEETQAESQALPSPXXXXXXXXXXXXXXXXXXXXXXXAHLKASSAAAEVSRQVEAFSAEAXXXXXXXXXXXXRSRHRAAVSSNLAHESVFDNEADFLAKSAAEQAERGGSGGGDGYFLDAAGRYLSGFASSFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGPTSIVRYANLMEGQYTVVLFDLETTGLNADNHRIIQIAAKVMGSND-------------------------PNHTFSAYVDPEDVSVSTYIQELTGITPKILAENKAQCFREVWPQFSGWLAGVDGERASAAXXXXXXXXXXGGVVLVAHNAKFDHSFLLAEVIRGEFG-RFAMGKIGIVSILDTLPLLKDQGLWRQSNREVD-LPIRPARFSLGVVFQHLYGKEMPGSHTALGDVIGLEGVLSAPGISDRWRSVAS 2319
+ LYMSATPIPR+L L YGDMEVS+L E P + T++ P+ + ERL+ + + ++ ++K G G E + SVT+R+ +VE LGE+ V ++HGRM + K + L +F+ V RVLV+TS++EVGVDVP A VC+VE+AE FGLSQLHQ+RGR+GR G A +S AD + +++ T HC+L Y PN + A +RL ++ T DGF +AE+DL LRGPGEVLG RQ G+ RL DL + L + AN+ AR A + R EG V G + E + + L + A P++SG E Q ES+ PS XXXX K S+ S+ + A XXXXX S+ + S + + N A S+ G + Y F S P P P + +L T ++FD ETTGL A++ RIIQ+AAKV+ +D F+ YVDP + I E+TGI+ + L +A+ F EVWP F W+ V G + VVLVAHNA FDH L+ ++ R R + IV ++DTL + + +W S R D LPI+P F G ++++L ++ +H+A GDV+GLE +L P ++ +WRS S
Sbjct: 570 NVLYMSATPIPRTLLLTNYGDMEVSRLDEAPARDVQVTTSIFPLTSLVQIAERLRKKILENSGEKVFWVLPCIEEKRSSDKDRTEEGEEKRGEAGEECVKITSVTQRHQAMVELLGEELVGMVHGRMDSESKLQALRDFSAGVT-------RVLVSTSVVEVGVDVPDATVCIVEHAEYFGLSQLHQLRGRIGR---GYA---VSAKAD---------RKAMDQLTECHCVLAYDDTSPNK-EKALQRLLTLKKTVDGFEIAEQDLKLRGPGEVLGNRQSGHKGFRL--VDLAKHEGLLDEANQVAR------------------------AHADSVVRREEGCTVEAVAHGNILEYEGVETLLR------------------IFEAKPSSSG-----ENIQKESR--PS-------------------SXXXXXXXKVSTQ----SKNNSLLESTASXXXXXKLSMGGVSKKKPPTSLQKSKSAPIANACTAPAPSSISDLPPGWT----------TVTYGDRFEISTPPPSSGDEEIEGGELTLMPGTEPVLSTRFSIDDL------PIPRVSI---DLEAEDVTFIIFDTETTGLRAESERIIQLAAKVLSPSDWGGGEDDEQANQLAAAGLASGGEPEDGLLFNGYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVNAVRGGKP---------------VVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIW--SRRSGDGLPIKPNTFRQGALYRYLLRDDLQNAHSAKGDVLGLEALLKHPFVNKKWRSAGS 1263
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: A0A3C0FNP0_9PROT (ATP-dependent DNA helicase RecG (Fragment) n=1 Tax=Thalassospira sp. TaxID=1912094 RepID=A0A3C0FNP0_9PROT) HSP 1 Score: 191 bits (486), Expect = 1.280e-50 Identity = 127/308 (41.23%), Postives = 169/308 (54.87%), Query Frame = 1
Query: 4 AEHTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAMSD----------VSDDKAGGREHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTLAEHANRYARGLVERWMGQTELQKKRSGGL 897
A L M+ATPIPR+LTL +GDMEVS+L E P G +DT ++P+D+ +DV+ + RAM V D + + + ERY VL E G+DRV L+HG+M +K++ + +FA +LVAT++IEVGV+VP A + V+E+AE FGL+QLHQ+RGR+GR D S C+LLYG LG + RLK +R T DGF++AE DL LRG GEVLG RQ G E RL A+L G L A AR +V+R +LQK R L
Sbjct: 84 AVDVLVMTATPIPRTLTLTAFGDMEVSRLDEKPPGRKPVDTRVLPIDKVDDVISGI-GRAMRSGTKIYWVCPLVEDSEILD---LQAADERYRVLAELFGQDRVGLVHGKMKGKEKDEVMEKFAHG-------DTSILVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRIGRGD-----------------------------AASTCLLLYGSPLGQVSKARLKIMRETEDGFIIAEEDLKLRGAGEVLGTRQSGLQEYRL--ANLELHGDLLAIARDDARLIVDR---DPDLQKARGDAL 346
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: A0A533J6G4_9BRAD (ATP-dependent DNA helicase RecG (Fragment) n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A533J6G4_9BRAD) HSP 1 Score: 184 bits (466), Expect = 1.990e-48 Identity = 114/276 (41.30%), Postives = 155/276 (56.16%), Query Frame = 1
Query: 4 AEHTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAMSD----------VSDDKAGGREHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQ 801
A L +SATPIPR+L L +GDM+VS+LRE P G IDT VP+ R +V + + RA+ V + +A G EH+ + T+R++ L ++ G D V L+HG+M DK++ + +FA G GL LVAT+++EVGVDVP A + V+ENAE FGL+QLHQ+RGR+GR S C+LLY LG+ + RL IR T DGF +AE DL LRG G+VLGVRQ G R+ +D+ Q
Sbjct: 32 AVDVLVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRTVPLSRLEEVTDGV-GRALKSGKRVYWICPLVEESEAEGTEHLTNATKRFESLQKRFG-DAVGLVHGQMKGTDKDRVMAQFA-----SGEIGL--LVATTVVEVGVDVPAASIMVIENAERFGLAQLHQLRGRIGRGSEA-----------------------------STCLLLYKEPLGEMSKARLNVIRETTDGFRIAEEDLKLRGEGDVLGVRQSGLPGYRIARSDVHGQ 269
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: A0A0B4XUX1_9PROT (ATP-dependent DNA helicase RecG n=16 Tax=Thalassospira TaxID=168934 RepID=A0A0B4XUX1_9PROT) HSP 1 Score: 191 bits (486), Expect = 7.200e-48 Identity = 126/297 (42.42%), Postives = 164/297 (55.22%), Query Frame = 1
Query: 4 AEHTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAM---------------SDVSDDKAGGREHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTLAEHANRYARGLVE 849
A L M+ATPIPR+LTL +GDMEVS+L E P G +DT ++P D+A+DV+ + RAM S++ D + + ERY +LVE GE RV L+HG+M A DK+ + FA L +LVAT++IEVGV+VP A + V+E+AE FGL+QLHQ+RGR+GR G A S+ C+LLYG LG+ + RLK +R T DGF++AE DL LRG GEVLG RQ G RL A L G L A AR +VE
Sbjct: 414 AVDVLVMTATPIPRTLTLTAFGDMEVSRLDEKPPGRKPVDTRVLPADKADDVISGI-GRAMRTGTKIYWVCPLVEDSEILD--------LQAAEERYRILVELFGESRVGLVHGKMKAKDKDAVMERFAHG-------DLSILVATTVIEVGVNVPEATIMVIEHAERFGLAQLHQLRGRIGR---GNAAST--------------------------CLLLYGSPLGEISKARLKIMRETEDGFIIAEEDLRLRGAGEVLGTRQSGLQAYRL--ASLEMHGDLLAIARDDARLIVE 663
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: UPI00105DCCD1 (ATP-dependent DNA helicase RecG n=1 Tax=Lysobacter segetis TaxID=2492394 RepID=UPI00105DCCD1) HSP 1 Score: 185 bits (470), Expect = 2.400e-47 Identity = 123/306 (40.20%), Postives = 163/306 (53.27%), Query Frame = 1
Query: 10 HTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRA-----------MSDVSDDKAGGREHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTL-----------AEHANRYARGLVERWMG 861
H L M+ATPIPR+L +A Y D++VS + E+P G + T ++ DR ++VER++ + D SD+ A +D L QL E R+ L+HGRM A+K + F ++GG +LVAT++IEVGVDVP A + ++ENAE GLSQLHQ+RGR+GR G A S+C+LLY P L A ERL +R T DGF++AERDL LRGPGE+LG RQ G E R VADLT+ L AE A A +V RW+G
Sbjct: 200 HQLVMTATPIPRTLAMAAYADLDVSTIDELPPGRTPVTTVVLAADRRPELVERIRLACAEGRQAYWVCTLIDESDEVVARAAQTA-----FDELTAQLPELRLGLVHGRMRPAEKQAAMLAF----KNGGTD---LLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGR---GSA--------------------------VSNCVLLYQPPLSQMARERLSTMRETNDGFVIAERDLELRGPGELLGTRQTGLAEFR--VADLTRDADLLPRVQSLGERVAERAPELAGRIVARWVG 462
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Match: A0A2E8XN49_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XN49_9PROT) HSP 1 Score: 190 bits (482), Expect = 2.650e-47 Identity = 123/296 (41.55%), Postives = 162/296 (54.73%), Query Frame = 1
Query: 4 AEHTLYMSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLKSRAMSDVSDDKAGGR-------------EHVASVTERYDVLVEQLGEDRVSLLHGRMSAADKNKTLTEFAMSVEDGGRPGLRVLVATSIIEVGVDVPRAGVCVVENAEMFGLSQLHQIRGRLGRTDRGKARSSLSFSADGRQQPPLPAEEMVNKKTTSHCILLYGPNLGDAATERLKAIRATRDGFLLAERDLALRGPGEVLGVRQKGYIEGRLKVADLTQQGTLAEHANRYARGLVER 852
A L M+ATPIPR+L LA YGD++ SQLRE P G + T+ VDR D + ++ + AGG+ E VA+ T+R+ L ++ G D+V L+HGRMS K+ ++ FA S E P L +LVAT++IEVGVDVP A V +VE+AE FGL+QLHQ+RGR+GR +R C+LLYG +G A ERL +R T DGF +AE+DL LRG G+VLG RQ G + RL DL G L A AR ++ER
Sbjct: 419 AVDVLLMTATPIPRTLMLAAYGDLDESQLREKPAGRKPVKTSTASVDRLEDAISGVRRQL-------DAGGKVFWVCPLVEESETEDVAAATQRHSALQDRFG-DKVGLVHGRMSGKQKDAVMSRFAGSEE----PSLDILVATTVIEVGVDVPDATVMIVEHAERFGLAQLHQLRGRIGRGERDAT-----------------------------CLLLYGHGIGKTARERLTVLRDTDDGFEIAEQDLRLRGAGDVLGTRQSGLPDFRL--VDLAAHGELLAVARDDARLIIER 671 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1962.4985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1962.4985.1 >prot_H-paniculata_contig1962.4985.1 ID=prot_H-paniculata_contig1962.4985.1|Name=mRNA_H-paniculata_contig1962.4985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=806bp MSATPIPRSLTLALYGDMEVSQLREMPQGSCDIDTTLVPVDRANDVVERLback to top mRNA from alignment at H-paniculata_contig1962:7053..22973- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1962.4985.1 ID=mRNA_H-paniculata_contig1962.4985.1|Name=mRNA_H-paniculata_contig1962.4985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15921bp|location=Sequence derived from alignment at H-paniculata_contig1962:7053..22973- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1962:7053..22973- >mRNA_H-paniculata_contig1962.4985.1 ID=mRNA_H-paniculata_contig1962.4985.1|Name=mRNA_H-paniculata_contig1962.4985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4836bp|location=Sequence derived from alignment at H-paniculata_contig1962:7053..22973- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |