mRNA_H-paniculata_contig19601.4979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19601.4979.1
Unique NamemRNA_H-paniculata_contig19601.4979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19601.4979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19601contigH-paniculata_contig19601:4278..4556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size267
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.8071563-UTR-H-paniculata_contig19601:4277..42891622929486.8071563-UTR-H-paniculata_contig19601:4277..4289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19601 4278..4289 +
1691480882.6817887-UTR-H-paniculata_contig19601:4277..42891691480882.6817887-UTR-H-paniculata_contig19601:4277..4289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19601 4278..4289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.8192692-CDS-H-paniculata_contig19601:4289..45561622929486.8192692-CDS-H-paniculata_contig19601:4289..4556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19601 4290..4556 +
1691480882.6918528-CDS-H-paniculata_contig19601:4289..45561691480882.6918528-CDS-H-paniculata_contig19601:4289..4556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19601 4290..4556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19601.4979.1prot_H-paniculata_contig19601.4979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19601 4290..4556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19601.4979.1

>prot_H-paniculata_contig19601.4979.1 ID=prot_H-paniculata_contig19601.4979.1|Name=mRNA_H-paniculata_contig19601.4979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MYVNNLSLFSNCKSIAGRGIAMQAVRYNGSNVQCNYCKGVGHVIQDCAML
KVKERRQKAGGGHTRHGGDGKQKWCSFHMATTHSDEECR
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mRNA from alignment at H-paniculata_contig19601:4278..4556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19601.4979.1 ID=mRNA_H-paniculata_contig19601.4979.1|Name=mRNA_H-paniculata_contig19601.4979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig19601:4278..4556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTACACACCATGTACGTCAACAACCTTTCGCTTTTTTCTAACTGCAA
GTCGATCGCAGGTCGCGGCATCGCCATGCAGGCGGTCCGTTACAACGGCA
GCAACGTGCAGTGCAACTACTGCAAGGGTGTCGGGCACGTAATACAGGAC
TGCGCCATGCTTAAAGTGAAGGAACGCAGGCAAAAGGCCGGAGGTGGACA
CACGCGGCATGGGGGAGACGGCAAACAAAAGTGGTGTTCATTTCACATGG
CGACTACGCACAGTGACGAGGAGTGCCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19601:4278..4556+

>mRNA_H-paniculata_contig19601.4979.1 ID=mRNA_H-paniculata_contig19601.4979.1|Name=mRNA_H-paniculata_contig19601.4979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig19601:4278..4556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGTCAACAACCTTTCGCTTTTTTCTAACTGCAAGTCGATCGCAGG
TCGCGGCATCGCCATGCAGGCGGTCCGTTACAACGGCAGCAACGTGCAGT
GCAACTACTGCAAGGGTGTCGGGCACGTAATACAGGACTGCGCCATGCTT
AAAGTGAAGGAACGCAGGCAAAAGGCCGGAGGTGGACACACGCGGCATGG
GGGAGACGGCAAACAAAAGTGGTGTTCATTTCACATGGCGACTACGCACA
GTGACGAGGAGTGCCGAATGTACGTCAACAACCTTTCGCTTTTTTCTAAC
TGCAAGTCGATCGCAGGTCGCGGCATCGCCATGCAGGCGGTCCGTTACAA
CGGCAGCAACGTGCAGTGCAACTACTGCAAGGGTGTCGGGCACGTAATAC
AGGACTGCGCCATGCTTAAAGTGAAGGAACGCAGGCAAAAGGCCGGAGGT
GGACACACGCGGCATGGGGGAGACGGCAAACAAAAGTGGTGTTCATTTCA
CATGGCGACTACGCACAGTGACGAGGAGTGCCGA
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