prot_H-paniculata_contig1960.4977.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1960.4977.1
Unique Name	prot_H-paniculata_contig1960.4977.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	153

Homology

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BLAST of mRNA_H-paniculata_contig1960.4977.1 vs. uniprot
Match: D8LKG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG3_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.090e-58
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 0

Query:    1 MPEFHFMESDWGLHAQRGGKITTAAALVFMVVSFVFWAVLGAFWSLAVALFLATFEAPVVYKCLEPCRRLEDILNENIKFSIPAVRAGVDIALAVVCFLIGGLFQILLGIMLLMTATLYIFAQIVGASLTDSSGLPTSEAQPDGQTPFGTFT 152
            MPEFHFMESDWG+HA+RGG I TA +L   VV F+FW   GA  SLA+ L LATFE P VYKC EPCRRLE ILN+ +KFSIPAVRA + + LA+V F    L  I+LG++LL+TA LY FAQIVG+++TD++ +P+  A  DGQTPFGTFT
Sbjct:    1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFT-SNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 151

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1960.4977.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1960.4977.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LKG3_ECTSI	1.090e-58	62.50	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 41..45
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 65..83
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 46..64
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 110..129
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..40
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 130..152
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 84..104
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 105..109
None	No IPR available	TMHMM	TMhelix		coord: 26..48
None	No IPR available	TMHMM	TMhelix		coord: 91..113

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1960	contig	H-paniculata_contig1960:12077..21756 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1960.4977.1	mRNA_H-paniculata_contig1960.4977.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1960 11955..21898 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1960.4977.1 ID=prot_H-paniculata_contig1960.4977.1|Name=mRNA_H-paniculata_contig1960.4977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MPEFHFMESDWGLHAQRGGKITTAAALVFMVVSFVFWAVLGAFWSLAVAL
FLATFEAPVVYKCLEPCRRLEDILNENIKFSIPAVRAGVDIALAVVCFLI
GGLFQILLGIMLLMTATLYIFAQIVGASLTDSSGLPTSEAQPDGQTPFGT
FT*