mRNA_H-paniculata_contig196.4973.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig196.4973.1
Unique NamemRNA_H-paniculata_contig196.4973.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig196.4973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig196contigH-paniculata_contig196:31274..31939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size233
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig196.4973.1prot_H-paniculata_contig196.4973.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig196 31361..31939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.8098447-UTR-H-paniculata_contig196:31273..313601622929485.8098447-UTR-H-paniculata_contig196:31273..31360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig196 31274..31360 +
1691480882.35768-UTR-H-paniculata_contig196:31273..313601691480882.35768-UTR-H-paniculata_contig196:31273..31360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig196 31274..31360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.8278947-CDS-H-paniculata_contig196:31360..314481622929485.8278947-CDS-H-paniculata_contig196:31360..31448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 31361..31448 +
1691480882.3686976-CDS-H-paniculata_contig196:31360..314481691480882.3686976-CDS-H-paniculata_contig196:31360..31448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 31361..31448 +
1622929485.8420854-CDS-H-paniculata_contig196:31883..319391622929485.8420854-CDS-H-paniculata_contig196:31883..31939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 31884..31939 +
1691480882.3768783-CDS-H-paniculata_contig196:31883..319391691480882.3768783-CDS-H-paniculata_contig196:31883..31939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 31884..31939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig196.4973.1

>prot_H-paniculata_contig196.4973.1 ID=prot_H-paniculata_contig196.4973.1|Name=mRNA_H-paniculata_contig196.4973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MGSTKHEDGIRAAARVRAHGRLIKSNPRSDLATTGHRNKPSDSYRSNF
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mRNA from alignment at H-paniculata_contig196:31274..31939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig196.4973.1 ID=mRNA_H-paniculata_contig196.4973.1|Name=mRNA_H-paniculata_contig196.4973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=666bp|location=Sequence derived from alignment at H-paniculata_contig196:31274..31939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACCTCAGGACTTAAACGTCCGCTTTTCTCCGTGCCGCTGAGAGACTT
CTGCAACTCAGGTGGTTGGTCTGGCTAAATCAGAGCGATGGGTAGTACCA
AACACGAGGATGGAATTCGTGCCGCGGCAAGAGTACGAGCACATGGTCGC
CTCATTAAAAGTAATCCGAGATCAGGTGAATTCAGGATACTGTACAGACA
CACAGATTATTATGCAAAAGGCTTAGCGCCCCAAGGTACGTCGCGCGGGC
GGAGGATCTTGTCCGCCATGTGTCGAGAATGATCAGCGTATTTCCTCGTT
TGGGTCAAAGATAGTTGTTTGTCGTTGGCTGCGTGTCACTATACCACCAC
TGCGCCTTTAGCTGTCCCCCTCGATAAATAGTGTTGTCCCGTTGTTAACC
TCCGCCCGACTAGGAAGGATGGTGTTTTCTAGGTGTTTTAGAGTGGCTTC
GGTGAAAATGTCCCCATCCCCTTCATCTGCGTGATTCACCCCGTTCGAAA
TCGAACACTGAACTGATTCGCGCCCTTCATAAATAGCCGTGCTCTGCAAA
GCGCTATGAATCGATAACTATTTTTCCTGCCGGCTGAACAGTCTGGTTTT
GTCACGTCAGATCTTGCGACAACTGGACATCGCAACAAGCCAAGCGATAG
CTACAGAAGTAATTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig196:31274..31939+

>mRNA_H-paniculata_contig196.4973.1 ID=mRNA_H-paniculata_contig196.4973.1|Name=mRNA_H-paniculata_contig196.4973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig196:31274..31939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTAGTACCAAACACGAGGATGGAATTCGTGCCGCGGCAAGAGTACG
AGCACATGGTCGCCTCATTAAAAGTAATCCGAGATCAGATGGGTAGTACC
AAACACGAGGATGGAATTCGTGCCGCGGCAAGAGTACGAGCACATGGTCG
CCTCATTAAAAGTAATCCGAGATCAGATCTTGCGACAACTGGACATCGCA
ACAAGCCAAGCGATAGCTACAGAAGTAATTTCATCTTGCGACAACTGGAC
ATCGCAACAAGCCAAGCGATAGCTACAGAAGTAATTTC
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