prot_H-paniculata_contig1958.4964.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1958.4964.1
Unique Nameprot_H-paniculata_contig1958.4964.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length144
Homology
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A1J3IYK5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IYK5_NOCCA)

HSP 1 Score: 72.0 bits (175), Expect = 5.500e-12
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAPGSA-----DKPSEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDS 122
            MKD+G  SR+L ++I RDR  GT+ +SQ  YI +V K   +T  +    P +          + +  EAV  +         +LMYA IG+RPDIAYAV  ++R + +P R+ ++  K ++  L  S
Sbjct:  115 MKDMGKASRILGMDIIRDRERGTLQLSQESYIEKVLKTFGMTEAKPTTTPLATHFRLKSLTKDERKEEAVHMEDTPYASAVGSLMYAMIGSRPDIAYAVGVISRFMSNPGRDHWTAVKWVLRYLRGS 241          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A1J3DQ82_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DQ82_NOCCA)

HSP 1 Score: 71.2 bits (173), Expect = 6.940e-12
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAPGSA-----DKPSEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDS 122
            MKD+G  SR+L ++I RDR  GT+ +SQ  YI +V K   +T  +    P +          + +  EA   +         +LMYA IG+RPDIAYAV  ++R + +P R+ ++  K ++  L  S
Sbjct:   25 MKDMGKASRILGMDIIRDREKGTLQLSQESYIEKVLKTFGMTEAKPTSTPLATHFRLKSLSKDERKEEAAHMENTPNASAVGSLMYAMIGSRPDIAYAVGVISRFMSNPGRDHWTAVKWVLRYLRGS 151          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A6D2K0I3_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K0I3_9BRAS)

HSP 1 Score: 70.9 bits (172), Expect = 1.750e-11
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAPGSAD--KPSEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDS 122
            MKD+G+ SR+L I+I+RDR  GT+ +SQ  YI +V +   ++  + +  P  A     S  +  E V  +I        ++MYA +GTRPD+AYA+  V+R +  P    +   K ++  L  S
Sbjct: 1041 MKDMGAASRILGIDIKRDREKGTLCLSQSRYIEKVIQRFNMSGAKIVTTPIGAHFRLSSTKEDEEGVDIEIVPYSSAVGSIMYAMVGTRPDVAYAIGLVSRFMSKPGAVHWEAVKWLLRYLRSS 1164          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A1J3I7B7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3I7B7_NOCCA)

HSP 1 Score: 70.5 bits (171), Expect = 1.840e-11
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAPGSA-----DKPSEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVL 119
            MKDLG  SR+L ++I RDR  GT+ +SQ  YI +V K   +T  +  + P +          + +  EA+  +         +LMYA IG+RPD+A+AV  ++R + +P R+ ++  K ++  L
Sbjct:   96 MKDLGKASRILGMDIIRDREKGTLKLSQENYIEKVLKAFGMTEAKPTITPLATHFRLKSLTKDERKEEAIHMEGTPYASAVGSLMYAMIGSRPDLAFAVGVISRFMSNPGRDHWTAVKWVLRYL 219          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A6D2KTV0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KTV0_9BRAS)

HSP 1 Score: 70.1 bits (170), Expect = 1.980e-11
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAPGSADKP--SEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDSL 123
            MKDLG+ SR+L I+I R+R  GT+ +SQ GY+++V +   +   + +  P  A     S     E V +++        ++MYA IGTRPDIAYA+  V+R +  P    +   K ++  L  S+
Sbjct:   37 MKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYAIGLVSRFMSKPGDIHWEAVKWLLRYLKGSV 161          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS)

HSP 1 Score: 70.1 bits (170), Expect = 3.250e-11
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAPGSADKP--SEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDSL 123
            MKDLG+ SR+L I+I R+R  GT+ +SQ GY+++V +   +   + +  P  A     S     E V +++        ++MYA IGTRPDIAYA+  V+R +  P    +   K ++  L  S+
Sbjct: 1062 MKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYAIGLVSRFMSKPGDIHWEAVKWLLRYLKGSV 1186          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A6D2JMB2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JMB2_9BRAS)

HSP 1 Score: 68.9 bits (167), Expect = 8.240e-11
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAP-------GSADKPSEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVL 119
            MKDLG  SR+L ++I RDR  GT+ +SQ  YI +V K   +   ++   P        S  K    +  E V  +         +LMYA IG+RPD+AYAV  ++R + +P RE ++  K ++  L
Sbjct: 1160 MKDLGKASRILGMDIIRDREKGTLKLSQESYIEKVLKAFDMADAKSTTTPLATHFKLKSLTKAERKE--EVVHMENKPYASAVGSLMYAMIGSRPDLAYAVGVISRFMSNPGREHWTAVKWVLRYL 1283          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD)

HSP 1 Score: 68.2 bits (165), Expect = 1.520e-10
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAP-GSADKPSEPKPLEAVLSDINAGEQES-STLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDS 122
            MKD+G  SR+L I+I+RDR   T+ + Q GYI++V K   ++  +A+  P GS  K +  K  +  +         +  ++MYA +GTRPD+AYA+  V+R +  P    +   K ++  L  S
Sbjct: 1061 MKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKVPYLSAVGSVMYAMVGTRPDVAYALGLVSRFMSKPGSIHWEAVKWLLRYLRGS 1184          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A6D2HSU5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HSU5_9BRAS)

HSP 1 Score: 68.2 bits (165), Expect = 1.520e-10
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAP-GSADKPSEPKP-LEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDSL 123
            MKDLG+ SR+L ++I RDR  GT+ +SQ  Y+R+V +   ++  ++ L P G   K S  K   E V +++        ++MYA +G+RPD+AY +  V+R +  P    +   K ++  +  S+
Sbjct: 1072 MKDLGAASRILGMDITRDREEGTLCLSQANYLRKVIENFRMSDAKSSLTPIGGHFKLSSVKDDEEGVDTEVIPYASVVGSIMYAMVGSRPDLAYGIGLVSRFMSKPGHIHWEAVKWLLRYIKGSV 1196          
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Match: A0A6D2K295_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K295_9BRAS)

HSP 1 Score: 67.4 bits (163), Expect = 1.690e-10
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 0
Query:    1 MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAP-GSADKPS-EPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARRIEDPSREDFSTCKPMIMVLTDSL 123
            MKDLG+  R+L +EI RDR NGT+ +SQ  Y+++V +   +T  ++   P G+  K S   +  E + +++        ++MYA IG+RPD+AY +  V+R +  P    +   K ++  +  SL
Sbjct:   17 MKDLGAARRILGMEIIRDRVNGTLQLSQSNYLKKVIENFRMTDSKSSQTPIGAHFKLSLVTEDEECIDTEVTPYSSAVGSIMYAMIGSRPDLAYGIGLVSRFMSKPGSIHWEAVKWLLRYIKGSL 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1958.4964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3IYK5_NOCCA5.500e-1234.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3DQ82_NOCCA6.940e-1233.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2K0I3_9BRAS1.750e-1133.87Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A1J3I7B7_NOCCA1.840e-1133.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2KTV0_9BRAS1.980e-1134.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2J0E6_9BRAS3.250e-1134.40Uncharacterized protein n=3 Tax=Microthlaspi errat... [more]
A0A6D2JMB2_9BRAS8.240e-1134.92Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI00142E19AD1.520e-1033.87uncharacterized protein LOC103874474 n=1 Tax=Brass... [more]
A0A6D2HSU5_9BRAS1.520e-1032.80Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2K295_9BRAS1.690e-1032.80Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1958contigH-paniculata_contig1958:4934..5489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1958.4964.1mRNA_H-paniculata_contig1958.4964.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1958 4739..5860 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1958.4964.1 ID=prot_H-paniculata_contig1958.4964.1|Name=mRNA_H-paniculata_contig1958.4964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MKDLGSLSRVLAIEIRRDRPNGTISISQGGYIREVSKYTVLTSVEAILAP
GSADKPSEPKPLEAVLSDINAGEQESSTLMYASIGTRPDIAYAVHQVARR
IEDPSREDFSTCKPMIMVLTDSLMPTGREMTRTESPQQDKYSS*
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