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Homology
BLAST of mRNA_H-paniculata_contig19578.4963.1 vs. uniprot
Match: D7FTY6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY6_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 6.450e-12 Identity = 40/59 (67.80%), Postives = 52/59 (88.14%), Query Frame = 2
Query: 563 MASMHTMIESKDDKIQKLKRDSDRLRREIKRLHVKGEERKGQENAIEMATTQNARLLKV 739
M S+H +IE+KD+ +QK KR+SDRLRREIKRLHV+ EER+GQENA+ +A TQN+RLLK+
Sbjct: 1 MGSLHGVIETKDNAVQKHKRESDRLRREIKRLHVEREERQGQENAMIVAATQNSRLLKL 59
BLAST of mRNA_H-paniculata_contig19578.4963.1 vs. uniprot
Match: A0A662XL96_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XL96_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.630e-9 Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 2
Query: 455 LIKLRDDMIEAKHHEVLLLSKQNQGLRTGIDAVETEMASMHTMIESKDDKIQKLKRDSDRLRREIKRLHVKGEERKGQENAIEMATTQNARLL 733
LI+LRDD +EAK E+ LLS QN L +D +E + + + +K++ + + +R DRL E++ L V + +G+E A+E+ATTQNA+LL
Sbjct: 178 LIRLRDDALEAKTRELWLLSGQNDQLHVQLDELEAALEQLQRTVLAKENDLVRRQRRVDRLEAELEALQVSRSQAEGREKAMEIATTQNAKLL 270
BLAST of mRNA_H-paniculata_contig19578.4963.1 vs. uniprot
Match: A0A0P1AGN8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGN8_PLAHL) HSP 1 Score: 57.8 bits (138), Expect = 6.360e-6 Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 2
Query: 455 LIKLRDDMIEAKHHEVLLLSKQNQGLRTGIDAVETEMASMHTMIESKDDKIQKLKRDSDRLRREIKRLHVKGEERKGQENAIEMATTQNARLLK 736
LI+LRD+ I+AK EV LLS Q LR + E+ + + + SK++ + + +R +RL EI+ L + +G E AI +ATTQNA+LLK
Sbjct: 191 LIRLRDEAIDAKTREVWLLSGQYDRLRVQLGEQESALERLQINVTSKENDLMQQQRKINRLEAEIETLQAGLSQAEGCEKAINIATTQNAKLLK 284
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 69.7 |
| Seed ortholog evalue | 1.8e-09 |
| Seed eggNOG ortholog | 157072.XP_008871420.1 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 28ZWJ@1,2RSRY@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 760 |
| Cds size | 612 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19578.4963.1 >prot_H-paniculata_contig19578.4963.1 ID=prot_H-paniculata_contig19578.4963.1|Name=mRNA_H-paniculata_contig19578.4963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp
MSVTDQSIDSSTLTGSASTARADSDDASSVVTGRSEERDSAGSISPSPSP
SPSPSDCGKSRRSRLRTVAKAKAKAESSTRSQGRSKRTIIAPAHRTKEET
LHLIKLRDDMIEAKHHEVLLLSKQNQGLRTGIDAVETEMASMHTMIESKD
DKIQKLKRDSDRLRREIKRLHVKGEERKGQENAIEMATTQNARLLKVRSD
LMR* back to topmRNA from alignment at H-paniculata_contig19578:137..3561- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig19578.4963.1 ID=mRNA_H-paniculata_contig19578.4963.1|Name=mRNA_H-paniculata_contig19578.4963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3425bp|location=Sequence derived from alignment at H-paniculata_contig19578:137..3561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGTATGTAAAAAAAAATTCAGGGGGTTTGCTGAAAATCAGGTAAGTAC
GGCGCCGTGTGTATAGGTAGATATGTCCGTGGTGGTGGAGGTTGTTTCGG
AACAAAAATTACTAGTCTGGTAATAAATGTTGAAAGAGCACTGCCCTGCG
GTGGGCTTAAGCTCCTTCCCTCACAACGCTGCCGAGTGGTGCATACAGAA
GGTGTACACTCTGGGGTGGAAAGAGCACTGCCCTCGTTGTACGCAAAATC
AGCCAATGATTTATCTGTGCTGTATGTACTGTCTCTAACCGACTGACTAT
CTGAACAGCTGCAGGTCTACGTCCCCTGTGACAATGCCATAGTTGTTATT
TTCCGCTGTTTTCCGCTGTTTTCCTCTGTTTCCCCCTGTAATTCCCTGTG
ATAAGAGATGGAGACTACTATTCGATAGTAGGGTAGAAATCAAACCCTAA
CAAATTGACCATATGCTCGGTTCAAAGAGTTGTGTTTGAGAGGGCTTTGC
ATTTTATATACAATACTGCCAGGGGACATATCCTTTTGCAGTGCAAGGGC
TACAGCTCTATAGAATGTCATTTTTTTTATGGGTCTTATCTTGTCTGTCG
GTCATGTAAATGGCGCAACCTTGACTAGGTAGACTTAAACTGAAGGGTCA
ACTGAGAGTCTCTCGCTTTGGCATTTTGAAACGGAGTCTCTCTCGTTCCA
TGCTCTCAACCGTACACTTTTTGTACGGCCAAATCGTGCAGCGCCAAGTG
TCGAGATTTTGCAACCGCATGACAAAGACGACAATCACACATACCCTGAT
ACGAAATAGCTTGGGGAGCAGACGGCAATCCAGACTGGGATGGCAACATG
AGTGTCACCGACCAAAGCATCGACAGCAGTACACTGACAGGCAGCGCCAG
CACAGCGAGGGCTGATTCTGACGATGCCAGCAGCGTGGTCACCGGTCGTA
GCGAAGAGAGGGGTGCGTTAAACTTCAATGTGATGTATGTACTGACTAGG
TGCTTTTCTATTGTCACGTGACATGTGGGTCCTTCAAACACTTGACATTG
TGAGAGTCTTTTTCTAGAGTTTTTTTTTTTCTTGGCCGTTACTTTTGTTC
GTGAAGAAAAATTCGCGAAAAAGCCCATGTGCAATTTACAGCCGAGCCCC
CGAAAAAATATCAGTCAGATGTAAATCGACGGTGGAGCATGGGAAGATAT
ACATTCAAATGACATCATGCATGTTCCACCACGACGAGGCGTCAAGATAC
GCTGACTCTTCTTTACTGAGCTTTGACTCACGCTTGTCGTTCTCCAGATC
AAACACTACGTATATAATATACACTATGTGATCGGCCATTTCCGCGAAGC
GTGGTTGGAGGTGTGGGCAAGATGGATTATCGGTTGTTATCATTGTAGCC
ATTGTCACCCATGACAACGGCAGCAGCATGGGACAGCCTTGCAGCAGCAA
CTGAAGGTTGATGTCGGCGACAATGTGTTATGCGTTACATCTTCAAGAGT
CAGTGTTCATTTTTGTATAGGAGAGATGTGAAATGTGATAGGTACGTGCC
GCATGATGTGTGGTGACTGGTTAAGATCAAAATCGTCGGACCCTTCGAGT
GGTGCAGTAAACCTTGCACAACGAATATATGGGTTTGGGACTTTTGTCCC
TATCAAAAAAACAGGTAAAAGTGGGGGAAATTCCGCGTATTTGGGCGGTT
TAAGTTTGTCTGGTGAAAATCGGCGTCATTTTCTTTCGAAGAACAACCTC
GATAACTTGTGCAAAGCTTTGCTCGGGGGGAAAAATGCCCAGGAAGAACC
CCCCCCCAAAAAGCACCACGATAAGCAGTGGTCTTCGACTTATCAAGAAG
AGAATAAATGGTAGGTTTGTCAATATATCAATATCGCATCTACTGTCGTT
AACTGGAACCATTAAATAATGCTCAATCCCTCGCCCTGCCCTCACACATT
GTGGCCCGTTGTGCGTGTTCTACATGCTATGTTTCAGAAGACTCTGCGGG
GAGCATATCTCCATCTCCATCTCCATCTCCATCTCCATCCGATTGTGGCA
AGAGTCGAAGGTCAAGGTTGCGAACGGTGGCTAAAGCCAAAGCTAAAGCC
GAAAGCAGCACAAGATCTCAAGGGAGAAGCAAAAGAACGATCATTGCCCC
TGCTCATCGAACGAAAGAAGAAACTTTGCATCTCATCAAGCTTCGGGATG
ATATGATTGAGGCCAAGCATCATGAGGTAGGTGGATGTTCGAGATTGACC
AGTCATGTCTGCGCATGTTCTCGAATAGATCATCGGTCGCTGTCTTGTAC
GTCACTGCAACTGCTTGCTGAGACCATGTAGCACCGTAATTTCTTCCTGA
GTGCCACTGGAACATCACTTCACACTTTCCTCATGCGGTACGTACCGTTC
TCAGAGAGGGCGCCACAGCTCACAAAACTCGGTTTCTACGTAACGTATGC
TATGCAAATACTGTCATAGTATTAATATATACTACAGTACACGCTAACTT
TCAAGTAGGAGGCAGCGAAAATGACGTAATTCATGTCGTGATGTGATATG
ATTTAATGTGATATCCGCACACCACTGACAGGCTTGACCTAACCTTAAGG
ACTAAACTGAAGAAGTATATCGTCTCGCCACAGGTGCTACTCCTGTCAAA
GCAAAATCAGGGCCTTCGCACAGGGATTGATGCAGTGGAAACTGAGATGG
CATCCATGCATACGATGATCGAGTCAAAAGACGATAAAATCCAAAAGCTG
AAGAGGGATTCTGACCGCCTTCGTCGGGAAATCAAGCGACTTCACGTATG
TCCCGCCGATATATCTTTTACTGCTCTGGACAAATAGACCTATCGACTGC
CATGTGACAACGATATATGTGTGTCAATATCACATCTCACAGTACAGTCT
CGATCTGAGATGGAAGTGATTCATGCGCGGGGGGGCGTGTATTGAGTGGG
TCAATGTCGCCCTCCAGATCTTTCCGACGTCTTGACGACAGATTGACATC
CAGGCGTTGGATAGATAGATACATTAGAGTCTGGTTGACAGTATCGAATA
GAGTTACTCTTCTGGCGTTCTTGTTGAGAGAACCAGGGTGTAGGTCTCTC
AGTACTTCTAGGTGCAGCGAACAGACAGTAAAATAGAAACAAGGCAAGAC
GTGGCGTTGGATTGTCCGTCCACCGGGTGAAGAATGAGAGTGTCGCCCTT
CTCCTGTAGCGCGTAGTATAATACTAGGTAAATGCAATAACATGGCGACA
ATTGCACGAGCAGTGGGACGATCGATTGTTTGTTTTTAAAATGATTCATC
CCTTACCGTCTACATACGCAAGACAGGTCAAAGGAGAGGAACGAAAGGGC
CAGGAAAACGCGATCGAAATGGCAACTACTCAAAACGCGCGATTGCTCAA
GGTACGGAGTGATCTGATGAGGTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig19578:137..3561- >mRNA_H-paniculata_contig19578.4963.1 ID=mRNA_H-paniculata_contig19578.4963.1|Name=mRNA_H-paniculata_contig19578.4963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig19578:137..3561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGTCACCGACCAAAGCATCGACAGCAGTACACTGACAGGCAGCGC
CAGCACAGCGAGGGCTGATTCTGACGATGCCAGCAGCGTGGTCACCGGTC
GTAGCGAAGAGAGGGATGAGTGTCACCGACCAAAGCATCGACAGCAGTAC
ACTGACAGGCAGCGCCAGCACAGCGAGGGCTGATTCTGACGATGCCAGCA
GCGTGGTCACCGGTCGTAGCGAAGAGAGGGACTCTGCGGGGAGCATATCT
CCATCTCCATCTCCATCTCCATCTCCATCCGATTGTGGCAAGAGTCGAAG
GTCAAGGTTGCGAACGGTGGCTAAAGCCAAAGCTAAAGCCGAAAGCAGCA
CAAGATCTCAAGGGAGAAGCAAAAGAACGATCATTGCCCCTGCTCATCGA
ACGAAAGAAGAAACTTTGCATCTCATCAAGCTTCGGGATGATATGATTGA
GGCCAAGCATCATGAGACTCTGCGGGGAGCATATCTCCATCTCCATCTCC
ATCTCCATCTCCATCCGATTGTGGCAAGAGTCGAAGGTCAAGGTTGCGAA
CGGTGGCTAAAGCCAAAGCTAAAGCCGAAAGCAGCACAAGATCTCAAGGG
AGAAGCAAAAGAACGATCATTGCCCCTGCTCATCGAACGAAAGAAGAAAC
TTTGCATCTCATCAAGCTTCGGGATGATATGATTGAGGCCAAGCATCATG
AGGTGCTACTCCTGTCAAAGCAAAATCAGGGCCTTCGCACAGGGATTGAT
GCAGTGGAAACTGAGATGGCATCCATGCATACGATGATCGAGTCAAAAGA
CGATAAAATCCAAAAGCTGAAGAGGGATTCTGACCGCCTTCGTCGGGAAA
TCAAGCGACTTCACGTGCTACTCCTGTCAAAGCAAAATCAGGGCCTTCGC
ACAGGGATTGATGCAGTGGAAACTGAGATGGCATCCATGCATACGATGAT
CGAGTCAAAAGACGATAAAATCCAAAAGCTGAAGAGGGATTCTGACCGCC
TTCGTCGGGAAATCAAGCGACTTCACGTCAAAGGAGAGGAACGAAAGGGC
CAGGAAAACGCGATCGAAATGGCAACTACTCAAAACGCGCGATTGCTCAA
GGTACGGAGTGATCTGATGAGGTAGGTCAAAGGAGAGGAACGAAAGGGCC
AGGAAAACGCGATCGAAATGGCAACTACTCAAAACGCGCGATTGCTCAAG
GTACGGAGTGATCTGATGAGGTAG back to top
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