mRNA_H-paniculata_contig19576.4962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19576.4962.1
Unique NamemRNA_H-paniculata_contig19576.4962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: D8LRS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS5_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 3.100e-117
Identity = 176/207 (85.02%), Postives = 189/207 (91.30%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGDDD-TIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALLPE 624
            ++GG L VAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYV+AEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFF+NLMMNEELGLQVPTGDDD T+KEGFVMF+SFAFFGAMPLLGY+IVP++ P +S   LF VACLVTAA+LF MGAIKSQFGTR W TSG EML LGGSCA LAFEIGK VD L+ +
Sbjct:   82 AAGGHLPVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVMAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFVNLMMNEELGLQVPTGDDDDTVKEGFVMFLSFAFFGAMPLLGYVIVPLIKPDSSPAILFFVACLVTAASLFGMGAIKSQFGTRHWCTSGTEMLFLGGSCAALAFEIGKAVDGLIGQ 288
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: A0A835YUT7_9STRA (VIT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT7_9STRA)

HSP 1 Score: 293 bits (750), Expect = 2.490e-97
Identity = 147/206 (71.36%), Postives = 169/206 (82.04%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGDDDTIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALLPE 624
            ++GG L   VVLVLGFSNI ADALSMGVGEYLSS+AHNEYV+AEKRREEWELKNHREGEI EMV IF +RGMS++DA DV+ KMAKYDDFF+NLMM+EEL LQVP   D+TIKEGF+MF+SFA FGA+PLLGY I P++ P  S   LF +AC VT  +LF MGAIKS+F TRSWY SGFEM+ LGG CA +AFEIG  VD LL +
Sbjct:   74 AAGGGLDWPVVLVLGFSNILADALSMGVGEYLSSQAHNEYVMAEKRREEWELKNHREGEIAEMVAIFTQRGMSQEDASDVVNKMAKYDDFFVNLMMSEELQLQVPESQDETIKEGFIMFLSFATFGALPLLGYTIFPMLDPDISNAILFKLACAVTGVSLFLMGAIKSKFATRSWYASGFEMVCLGGVCAAVAFEIGNLVDGLLVD 279
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: W7TLX2_9STRA (Vacuolar iron family transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLX2_9STRA)

HSP 1 Score: 271 bits (693), Expect = 2.160e-88
Identity = 135/207 (65.22%), Postives = 163/207 (78.74%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGDDDTIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALLPEG 627
            ++GG L V VV+VLGFSNIFADA SMG+GEYLSSKAHNE+V  EK RE WEL+N REGEI EM++I+ ERGM   DAEDV+ KM+KYDDFF+N+MM EELGLQVP  +DD +KEG VMF+SFA FGAMPLLGY ++P+  P      LF++AC VTA TLF MGA+KS+F TR W  SG EML+LGG CAV+A+EIG  V +L+  G
Sbjct:   89 AAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVFKEKERESWELQNFREGEIKEMIDIYVERGMEPDDAEDVVRKMSKYDDFFVNVMMVEELGLQVPDPNDDIVKEGVVMFLSFAGFGAMPLLGYALIPLCFPSLGPSHLFNIACGVTALTLFIMGAVKSKFSTRGWLHSGLEMLVLGGICAVMAYEIGHLVSSLVGAG 295
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: A0A7S3XV86_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV86_HETAK)

HSP 1 Score: 254 bits (648), Expect = 6.040e-82
Identity = 128/203 (63.05%), Postives = 160/203 (78.82%), Query Frame = 1 
Query:   13 GGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGDDD-TIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALL 618
            GG L+   VL+LGFSNI ADALSMGVGEYLSSKAHNEYVL+EK+REEWEL+NH+EGEI EM++I+ ERGM + DA  V+  MAKY+ FF+N+MM EELGLQVP  D+D T+KEG VMF+SFA FGA+PLLGY+I P ++   ++ TLF  A   T   LF MGA+KS FGT+SWY SG E L LGG+CA++A+E+G  V+ L+
Sbjct:   70 GGGLAWQSVLILGFSNILADALSMGVGEYLSSKAHNEYVLSEKKREEWELRNHKEGEIKEMIDIYVERGMGQADATQVVNTMAKYEAFFVNVMMAEELGLQVPDEDEDETLKEGLVMFLSFACFGALPLLGYVIFPSVLGVDNESTLFWTAVATTLTVLFVMGAVKSYFGTKSWYASGAETLALGGACALVAYEVGGLVNGLV 272
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: A0A6V1NR54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NR54_HETAK)

HSP 1 Score: 252 bits (643), Expect = 6.150e-81
Identity = 126/207 (60.87%), Postives = 159/207 (76.81%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVP---TGDDDTIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALL 618
            ++GG + V VVLVLGFSNI ADALSMGVGEYLSS+AH EYVL+E+RREEWEL+NHREGE+ EMVEI+  RGM+R DAE V+ ++AKYD+FF+N+MM EELG+          DT++EG +MF +FA FG+MPLLGY +VP + P AS   LF+VA  VT   LF +GA+KS F T+SWY SG E L+LGG CA +A+EIG  V ++L
Sbjct:   85 AAGGGMGVDVVLVLGFSNIVADALSMGVGEYLSSRAHAEYVLSERRREEWELRNHREGEVREMVEIYVNRGMARDDAEVVLNRIAKYDEFFVNVMMAEELGMPANGQVADPADTVQEGLIMFAAFAVFGSMPLLGYCVVPALAPDASSSELFAVAVFVTLLFLFGLGAVKSHFSTKSWYCSGIETLLLGGCCAGIAYEIGNCVQSML 291
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: A0A7S0AV53_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AV53_9STRA)

HSP 1 Score: 248 bits (633), Expect = 2.080e-80
Identity = 126/211 (59.72%), Postives = 157/211 (74.41%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGDDD--TIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALLPEGPR 633
            ++GG LS  V+LVLGFSNIFADALSMGVGE+LSSKA NE++L+E++RE WE++N+ EGEI EMV+I+ ERGM R DA  VI  M+KY DFF+++MM EEL LQVP  D +   +KEGFVMF SFA FGAMPLLGY I P   P   +  LF+ AC++T   LF MG +KS F T  WY  G E L+LGG+CA +AF +G+ VD+LLPE  R
Sbjct:   11 AAGGNLSTQVILVLGFSNIFADALSMGVGEFLSSKAENEWILSERKREAWEMENYPEGEIEEMVDIYVERGMVRADAVQVIQIMSKYKDFFVDVMMAEELQLQVPDEDHEMEAMKEGFVMFCSFAIFGAMPLLGYAIFPTAFPHWGEQDLFAAACVITGVVLFLMGCVKSLFSTSRWYLCGLETLLLGGACATVAFTLGQFVDSLLPEDSR 221
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: A0A1E7FSD0_9STRA (Vacuolar Fe2+/Mn2+ uptake transporter-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSD0_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.740e-78
Identity = 121/208 (58.17%), Postives = 162/208 (77.88%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGD--DDTIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALLPE 624
            ++GG + V+ VLVLGFSNIFADALSMGVGE+LSSKA+NE++L+E+ REEWE++N REGEI EM++I+  +G++ +DA  VI  MAKY+DFF+++MM +EL LQVP  +  + ++KEGFVMF SFAFFGAMPLLGY+I+P++ P      LF  AC+VTA  LF +G+IKS F   +W+ SG E L+LGG+CA +AF IG  V+ LL E
Sbjct:   64 AAGGGIPVSAVLVLGFSNIFADALSMGVGEFLSSKANNEWILSEREREEWEMQNFREGEIQEMIDIYVNKGLTLEDATIVIKTMAKYEDFFVDIMMQQELELQVPESNHVEQSMKEGFVMFCSFAFFGAMPLLGYVIIPLLFPDLEPTYLFKSACVVTALVLFLLGSIKSNFSRSNWFLSGLETLLLGGTCATVAFVIGSFVNGLLDE 271
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: A0A7S1VE63_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE63_9STRA)

HSP 1 Score: 243 bits (621), Expect = 9.360e-78
Identity = 122/207 (58.94%), Postives = 160/207 (77.29%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGDDDTIKE----GFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDAL 615
            ++GG LS  VVL+LGFSNIFADALSMGVGE+LSSKA NE++L+E+RRE WE++N+ EGEI EMV+I+  RGM +QDAE VI  MAKY+DFF+++MM +EL LQVP  DDD +KE    G +MF SFAFFGA+PL+GY+I P++ P      LF  AC+VTA  LF +G++KS F + +W+ SG E L+LGG+CA LA+ IG+ +D L
Sbjct:   71 AAGGHLSTGVVLILGFSNIFADALSMGVGEFLSSKAENEWILSERRREAWEMENYPEGEIKEMVDIYVSRGMEQQDAELVIKTMAKYEDFFVDVMMTQELELQVP--DDDHVKESMREGVIMFCSFAFFGALPLIGYVIFPILFPTMDDDALFWSACIVTAVVLFMLGSVKSMFCSMNWFVSGSETLLLGGACATLAYTIGQFLDGL 275
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: A0A7S4A8R3_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8R3_9STRA)

HSP 1 Score: 243 bits (621), Expect = 2.400e-77
Identity = 122/208 (58.65%), Postives = 159/208 (76.44%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGD--DDTIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALLPE 624
            ++GG LS++ VLVLGFSNIFADALSMGVGE+LSSKA+NE++L+EKRREEWE++N R+GEI EM++I+  +G + +DA  VI  MAKY+ FF+++MM +EL LQVP  D  + ++KEGFVMF SFAFFG  PLLGY ++P M P    HTLF  AC+VT   LF +G+IKS F   +W+ SG E LILGGSCA +A+ IG  V+ LL +
Sbjct:   95 AAGGGLSISAVLVLGFSNIFADALSMGVGEFLSSKANNEWILSEKRREEWEMENFRDGEIQEMIDIYVSKGFTTEDATLVIKTMAKYEGFFVDIMMQQELELQVPDEDHVEQSMKEGFVMFCSFAFFGTAPLLGYTLIPWMFPHLESHTLFQSACVVTGLVLFMLGSIKSNFSRTNWFWSGCETLILGGSCATVAYTIGYFVNGLLDD 302
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BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Match: B8BVF1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVF1_THAPS)

HSP 1 Score: 240 bits (613), Expect = 1.430e-76
Identity = 115/208 (55.29%), Postives = 160/208 (76.92%), Query Frame = 1 
Query:    7 SSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNEELGLQVPTGDD--DTIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTLFSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGKGVDALLPE 624
            ++GG + + V+LVLGFSNIFADAL+MGVGE+LSSKA NE++L+E+RRE WE++N+ EGEI EM++I++ERGM+  DA+ VI  MAKY +FF+++MM EEL LQVP  D   +++KEG VMF +FA FG++PLLGYI++P + P   +  LF+ AC+VT   LF MG +KS F   +W+T G E L+LGG+CA +A+ IG+ VD L+ E
Sbjct:   71 AAGGSMPIPVILVLGFSNIFADALAMGVGEFLSSKAENEWILSERRRENWEMENYPEGEIAEMIDIYQERGMTHDDAKLVIETMAKYKEFFVDVMMAEELALQVPDEDHKIESMKEGVVMFGAFATFGSLPLLGYIVIPALFPSLGEDVLFTAACIVTGMVLFGMGCVKSIFSAANWFTCGLETLLLGGACATVAYTIGQFVDKLIAE 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19576.4962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRS5_ECTSI3.100e-11785.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUT7_9STRA2.490e-9771.36VIT family-domain-containing protein n=1 Tax=Tribo... [more]
W7TLX2_9STRA2.160e-8865.22Vacuolar iron family transporter n=2 Tax=Monodopsi... [more]
A0A7S3XV86_HETAK6.040e-8263.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1NR54_HETAK6.150e-8160.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0AV53_9STRA2.080e-8059.72Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1E7FSD0_9STRA1.740e-7858.17Vacuolar Fe2+/Mn2+ uptake transporter-like protein... [more]
A0A7S1VE63_9STRA9.360e-7858.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4A8R3_9STRA2.400e-7758.65Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
B8BVF1_THAPS1.430e-7655.29Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19576contigH-paniculata_contig19576:230..2102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score343.6
Seed ortholog evalue6.7e-92
Seed eggNOG ortholog2880.D8LRS5
Preferred nameCCC1
KEGG koko:K10610
KEGG Pathwayko03420,ko04120,ko05161,ko05203,map03420,map04120,map05161,map05203
KEGG ModuleM00385,M00386
Hectar predicted targeting categorysignal peptide
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005381,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006828,GO:0006873,GO:0006874,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0008324,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0012505,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0034220,GO:0034755,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0051716,GO:0055065,GO:0055071,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071421,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097577,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098852,GO:1903874
EggNOG free text desc.cellular manganese ion homeostasis
EggNOG OGsCOG1814@1,KOG4473@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Exons6
Model size639
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19576.4962.1prot_H-paniculata_contig19576.4962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19576 230..2102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929484.4922094-CDS-H-paniculata_contig19576:229..3401622929484.4922094-CDS-H-paniculata_contig19576:229..340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 230..340 +
1691480881.8152645-CDS-H-paniculata_contig19576:229..3401691480881.8152645-CDS-H-paniculata_contig19576:229..340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 230..340 +
1622929484.5128212-CDS-H-paniculata_contig19576:537..6361622929484.5128212-CDS-H-paniculata_contig19576:537..636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 538..636 +
1691480881.825311-CDS-H-paniculata_contig19576:537..6361691480881.825311-CDS-H-paniculata_contig19576:537..636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 538..636 +
1622929484.5299876-CDS-H-paniculata_contig19576:864..9691622929484.5299876-CDS-H-paniculata_contig19576:864..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 865..969 +
1691480881.8331604-CDS-H-paniculata_contig19576:864..9691691480881.8331604-CDS-H-paniculata_contig19576:864..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 865..969 +
1622929484.5432267-CDS-H-paniculata_contig19576:1192..12781622929484.5432267-CDS-H-paniculata_contig19576:1192..1278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 1193..1278 +
1691480881.8413107-CDS-H-paniculata_contig19576:1192..12781691480881.8413107-CDS-H-paniculata_contig19576:1192..1278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 1193..1278 +
1622929484.5572727-CDS-H-paniculata_contig19576:1687..17931622929484.5572727-CDS-H-paniculata_contig19576:1687..1793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 1688..1793 +
1691480881.8492525-CDS-H-paniculata_contig19576:1687..17931691480881.8492525-CDS-H-paniculata_contig19576:1687..1793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 1688..1793 +
1622929484.5709689-CDS-H-paniculata_contig19576:1970..21021622929484.5709689-CDS-H-paniculata_contig19576:1970..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 1971..2102 +
1691480881.85693-CDS-H-paniculata_contig19576:1970..21021691480881.85693-CDS-H-paniculata_contig19576:1970..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19576 1971..2102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19576.4962.1

>prot_H-paniculata_contig19576.4962.1 ID=prot_H-paniculata_contig19576.4962.1|Name=mRNA_H-paniculata_contig19576.4962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MSSSGGQLSVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVLAEKRRE
EWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFINLMMNE
ELGLQVPTGDDDTIKEGFVMFVSFAFFGAMPLLGYIIVPVMVPGASQHTL
FSVACLVTAATLFTMGAIKSQFGTRSWYTSGFEMLILGGSCAVLAFEIGK
GVDALLPEGPRV*
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mRNA from alignment at H-paniculata_contig19576:230..2102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19576.4962.1 ID=mRNA_H-paniculata_contig19576.4962.1|Name=mRNA_H-paniculata_contig19576.4962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1873bp|location=Sequence derived from alignment at H-paniculata_contig19576:230..2102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCATCAGGTGGGCAGTTATCTGTGGCAGTGGTTCTGGTGCTGGG
ATTCAGCAACATTTTCGCGGATGCACTCAGCATGGGAGTGGGCGAGTACC
TAAGCAGCAAGGTGAGAATTAGTGTTGTGTTCCACACGTTTGTAGGTGTT
TCGTCTTCTTTATCCCATCGATGAATGGCCCCGTCTTATGTTGTCTGGTC
GTTTTTTTAGTTCATCTAGCAAGCAGGCCAGCTGCCGCAAGTTAGCAAAC
CCAAGCAACCTCGTTGTTAATCAAACTTCTTCTGTCGCTCGCCACGCATA
TTCGTCAGGCACACAACGAGTACGTCTTGGCCGAGAAGAGACGGGAAGAG
TGGGAGTTGAAGAACCATCGGGAAGGAGAAATTTTGGAAATGGTGGAGAT
TTTCGAGGTGCGAGAGTACTATGGGAAGTATCTATTTTCGCGGGGACTTC
GACACTAACCAACGTGTGTTCGCTGCTGCCGCTGCTGCGCAATGGCGAGG
TCTTGTCGCCTAAGATAATCTGGCTGTTTGGTTGGTGCTGTTCGTTAACG
CCTCTCATACCGCCCGATGTGGGCATACCGGACAATCGACGAAACGGTGT
CGCATTGTCCATCATCTTATTTTCGTGCTTCCCAGGAACGAGGGATGAGC
CGACAAGATGCGGAGGACGTTATTGGCAAGATGGCCAAGTATGACGATTT
CTTCATCAATCTCATGATGAATGAGGAGCTCGGACTGCAGGTAATCATAA
TCACCCTTATGACTCCGATGGTCACTGGAATGACAATGCTTTTGTGGTGA
CCACAGGATGATACTTCGATCGCGTTGGAAGCTGTGCGTGTAGATGCAAA
GTTATCGAGCTCATGATCCGCTATCGTTTTGTAGCTCGATGTGCATACTT
TGTAGAAAATGTTATAGTTGCACCTGATCTCACTGTAAGCACTGATCCTC
CTGTTGAATTCAGGTACCCACCGGCGACGACGACACAATAAAAGAGGGGT
TCGTGATGTTCGTTTCGTTCGCTTTTTTCGGGGCCATGCCTCTCTTGGGG
TGAGTCCAATGTATGGCAGTAGGTCAATTTGCGCAAATCCCGACTCCATG
GCAATCTAATGCTACTACTATCATCAGCAAGTGAGGTCAACAGAAAAGTG
GTGCAGATCATGTACTGTCATATTTTATACCGTATCATTTTCTTACATCT
AGTTGATCTTTCCTTGATGCACACGTAAACAGAACAACTTTATGGAATTT
GATGCACTGATTCTTGACGGTGAGACTCTCGGCGCCGTGCTTGCAACTGG
TATGAGTGAATTTACATGCTATCCACCATGGGCCATGTTGAACACACACC
CGTAAAGTCAAGACAGTTACAAACGCTGTTTTTTTTCCCATATCTTCGGC
GAATGTGACAGCTATCGATCTAAATTTCTCGCAAATTCCGCCCTTGATAC
GTTCCCAGGTACATCATTGTGCCAGTTATGGTACCTGGCGCGTCTCAACA
CACTCTCTTCTCCGTTGCATGCTTGGTAACTGCGGCTACGTTGTTCACTA
TGGGGGCTATCAAGGTAAACAGGAGCACGAGAAATTATAGGGAAAATGTT
GTAGTTCTTTCCCAACCTATGCCCACACGCTGTTGTACGGGATATGGTCC
ATTCACATTGATGTATCGATGGAATTTGAATTAGAATAAGAGACTACAAC
CTCACATTTTCTTGCAACCCTCTCCCGTGATTGATGCACAGAGCCAATTC
GGAACTCGGAGCTGGTACACGTCAGGATTTGAGATGCTCATTCTTGGTGG
TTCTTGCGCCGTGTTGGCGTTTGAGATTGGAAAAGGTGTCGATGCTCTAC
TTCCGGAGGGTCCCCGTGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19576:230..2102+

>mRNA_H-paniculata_contig19576.4962.1 ID=mRNA_H-paniculata_contig19576.4962.1|Name=mRNA_H-paniculata_contig19576.4962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig19576:230..2102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCATCAGGTGGGCAGTTATCTGTGGCAGTGGTTCTGGTGCTGGG
ATTCAGCAACATTTTCGCGGATGCACTCAGCATGGGAGTGGGCGAGTACC
TAAGCAGCAAGATGTCCTCATCAGGTGGGCAGTTATCTGTGGCAGTGGTT
CTGGTGCTGGGATTCAGCAACATTTTCGCGGATGCACTCAGCATGGGAGT
GGGCGAGTACCTAAGCAGCAAGGCACACAACGAGTACGTCTTGGCCGAGA
AGAGACGGGAAGAGTGGGAGTTGAAGAACCATCGGGAAGGAGAAATTTTG
GAAATGGTGGAGATTTTCGAGGCACACAACGAGTACGTCTTGGCCGAGAA
GAGACGGGAAGAGTGGGAGTTGAAGAACCATCGGGAAGGAGAAATTTTGG
AAATGGTGGAGATTTTCGAGGAACGAGGGATGAGCCGACAAGATGCGGAG
GACGTTATTGGCAAGATGGCCAAGTATGACGATTTCTTCATCAATCTCAT
GATGAATGAGGAGCTCGGACTGCAGGAACGAGGGATGAGCCGACAAGATG
CGGAGGACGTTATTGGCAAGATGGCCAAGTATGACGATTTCTTCATCAAT
CTCATGATGAATGAGGAGCTCGGACTGCAGGTACCCACCGGCGACGACGA
CACAATAAAAGAGGGGTTCGTGATGTTCGTTTCGTTCGCTTTTTTCGGGG
CCATGCCTCTCTTGGGGTACCCACCGGCGACGACGACACAATAAAAGAGG
GGTTCGTGATGTTCGTTTCGTTCGCTTTTTTCGGGGCCATGCCTCTCTTG
GGGTACATCATTGTGCCAGTTATGGTACCTGGCGCGTCTCAACACACTCT
CTTCTCCGTTGCATGCTTGGTAACTGCGGCTACGTTGTTCACTATGGGGG
CTATCAAGGTACATCATTGTGCCAGTTATGGTACCTGGCGCGTCTCAACA
CACTCTCTTCTCCGTTGCATGCTTGGTAACTGCGGCTACGTTGTTCACTA
TGGGGGCTATCAAGAGCCAATTCGGAACTCGGAGCTGGTACACGTCAGGA
TTTGAGATGCTCATTCTTGGTGGTTCTTGCGCCGTGTTGGCGTTTGAGAT
TGGAAAAGGTGTCGATGCTCTACTTCCGGAGGGTCCCCGTGTGTAGAGCC
AATTCGGAACTCGGAGCTGGTACACGTCAGGATTTGAGATGCTCATTCTT
GGTGGTTCTTGCGCCGTGTTGGCGTTTGAGATTGGAAAAGGTGTCGATGC
TCTACTTCCGGAGGGTCCCCGTGTGTAG
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