mRNA_H-paniculata_contig19572.4960.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19572.4960.1
Unique NamemRNA_H-paniculata_contig19572.4960.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Match: UPI000539A888 (uncharacterized protein LOC104733287 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539A888)

HSP 1 Score: 52.8 bits (125), Expect = 3.590e-6
Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:    7 WVCDNGATKHMTHGPDFLCHYQECRG--RVRLADGSYLPIEEVGILFIHFRFDSKAVLMKLTQVAHVPPLTHHLLSLGRFADSDQRDTRLY 273
            W+CD+GAT H+T     L  +Q   G   V +ADGS LPI   G   +     + ++ + LT V +VP +  +L+S+ R  +++Q     Y
Sbjct:  129 WICDSGATHHITSDLANLSLHQPYTGGEEVTIADGSGLPITHTGSALL----PTPSLSLALTDVLYVPNIAKNLISVYRLCNANQVSVHFY 215
[Close]
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Match: A0A2P6R9W2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R9W2_ROSCH)

HSP 1 Score: 53.1 bits (126), Expect = 4.370e-6
Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:    1 EIWVCDNGATKHMTHGPDFLCHYQECRGRVRLA--DGSYLPIEEVGILFIHFRFDSKAVLMKLTQVAHVPPLTHHLLSLGRFA-DSD 252
              W+ D+GA++H+T     L       G  +L   +G+ L I  +G   +H    + +   KLT V HVP +TH+LLS+ RF  D+D
Sbjct:  379 STWLADSGASQHVTPDLSHLSEVTPYTGNAKLTVGNGNNLQIAHIGSSLMH----TPSASFKLTNVLHVPEITHNLLSVNRFVTDND 461
[Close]
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Match: UPI00063AF487 (uncharacterized protein LOC105789013 isoform X1 n=3 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AF487)

HSP 1 Score: 49.7 bits (117), Expect = 7.070e-5
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:    1 EIWVCDNGATKHMTHGPDFLCHYQECRGR--VRLADGSYLPIEEVGILFIHFRFDSKAVLMKLTQVAHVPPLTHHLLSLGRFADSDQRDTRLY 273
             IW  D+GAT H+T     L       G+  V + +G  +PI  +G   +     ++A L++L  V HVP +  +L+S+G+FA    RD  +Y
Sbjct:  333 SIWYPDSGATNHITPEVSNLAAPSSYTGKSCVTMGNGDSVPIAHIGSTTL----STRAQLLRLQNVLHVPAVCKNLMSVGQFA----RDNNVY 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI000539A8883.590e-632.97uncharacterized protein LOC104733287 n=1 Tax=Camel... [more]
A0A2P6R9W2_ROSCH4.370e-634.48Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
UPI00063AF4877.070e-532.26uncharacterized protein LOC105789013 isoform X1 n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19572contigH-paniculata_contig19572:4464..4736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929484.365773-CDS-H-paniculata_contig19572:4463..47361622929484.365773-CDS-H-paniculata_contig19572:4463..4736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19572 4464..4736 -
1691480881.7818923-CDS-H-paniculata_contig19572:4463..47361691480881.7818923-CDS-H-paniculata_contig19572:4463..4736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19572 4464..4736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19572.4960.1prot_H-paniculata_contig19572.4960.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19572 4464..4736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19572.4960.1

>prot_H-paniculata_contig19572.4960.1 ID=prot_H-paniculata_contig19572.4960.1|Name=mRNA_H-paniculata_contig19572.4960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
EIWVCDNGATKHMTHGPDFLCHYQECRGRVRLADGSYLPIEEVGILFIHF
RFDSKAVLMKLTQVAHVPPLTHHLLSLGRFADSDQRDTRLY
back to top

mRNA from alignment at H-paniculata_contig19572:4464..4736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19572.4960.1 ID=mRNA_H-paniculata_contig19572.4960.1|Name=mRNA_H-paniculata_contig19572.4960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig19572:4464..4736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTTGGGTTTGTGATAATGGGGCAACGAAGCACATGACTCATGGCCC
TGATTTTCTTTGTCATTACCAGGAATGTAGGGGGCGCGTTCGCCTTGCTG
ATGGTAGTTATCTCCCTATCGAAGAAGTTGGAATTTTGTTCATCCACTTT
CGATTTGACTCTAAAGCAGTATTGATGAAATTAACTCAAGTTGCTCACGT
ACCGCCTCTGACTCACCACCTCCTATCTCTCGGTAGATTCGCGGACTCTG
ATCAAAGGGACACACGTTTGTAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19572:4464..4736-

>mRNA_H-paniculata_contig19572.4960.1 ID=mRNA_H-paniculata_contig19572.4960.1|Name=mRNA_H-paniculata_contig19572.4960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig19572:4464..4736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTTGGGTTTGTGATAATGGGGCAACGAAGCACATGACTCATGGCCC
TGATTTTCTTTGTCATTACCAGGAATGTAGGGGGCGCGTTCGCCTTGCTG
ATGGTAGTTATCTCCCTATCGAAGAAGTTGGAATTTTGTTCATCCACTTT
CGATTTGACTCTAAAGCAGTATTGATGAAATTAACTCAAGTTGCTCACGT
ACCGCCTCTGACTCACCACCTCCTATCTCTCGGTAGATTCGCGGACTCTG
ATCAAAGGGACACACGTTTGTATGAGATTTGGGTTTGTGATAATGGGGCA
ACGAAGCACATGACTCATGGCCCTGATTTTCTTTGTCATTACCAGGAATG
TAGGGGGCGCGTTCGCCTTGCTGATGGTAGTTATCTCCCTATCGAAGAAG
TTGGAATTTTGTTCATCCACTTTCGATTTGACTCTAAAGCAGTATTGATG
AAATTAACTCAAGTTGCTCACGTACCGCCTCTGACTCACCACCTCCTATC
TCTCGGTAGATTCGCGGACTCTGATCAAAGGGACACACGTTTGTAT
back to top