mRNA_H-paniculata_contig1957.4958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1957.4958.1
Unique NamemRNA_H-paniculata_contig1957.4958.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 1.260e-95
Identity = 180/338 (53.25%), Postives = 216/338 (63.91%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGVT*TPPY---------PSFQR*P*VQGQEDDSCS*QRLVPSWFRLGSQGPGNQ*QGVQCRTVGLLRKYEAGAITVKRAAANGTVVDHRFEVPTEPGSSFPDARRAGG 989
            TT  GRGK+ K DDGR RLT+ Q DQL +FINDEHKAG QVFRRTVAEW+   CN + + SNR+VGGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEMD+AKRAED  LAV+VYMDE FVHQAHGS YSYFP++ENGVV+DG+GRTTGKG R+IMVHAITK GPL      + FPIEEGWFK  E   GK+      M DE+ AEF   +++          +GD H       +         P++   P  +G++             F    + P       +   V LLRK+ A +I VKR       V+H FEVP+EPGSSFP   R GG
Sbjct:  189 TTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNME-QPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--FCDGFPIEEGWFK--ETGSGKK-----KMEDEETAEFLWQAKLA---------KGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETN---TKKHNVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGG 504          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 5.330e-95
Identity = 177/338 (52.37%), Postives = 213/338 (63.02%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGVT*TPPY---------PSFQR*P*VQGQEDDSCS*QRLVPSWFRLGSQGPGNQ*QGVQCRTVGLLRKYEAGAITVKRAAANGTVVDHRFEVPTEPGSSFPDARRAGG 989
            TT  GRGK  K DDGR RLT+ QEDQL +FINDEHKAG QVFRRTVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEMD+AKRAED  LAV+VYMDE FVHQAHGS YSYFP++E+GVV+DG+GRTTGKG R+IMVHAITK GPL      +  PIEEGWFK  E   GK+      M DE+ AEF   +++          +GD H       +         P++   P  +G+              F    + P +     +   V LLR + A +I V+R      VV++  EVPTEPGSSFP   R GG
Sbjct:   38 TTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQAKLA---------KGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESN---TKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGG 353          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 8.050e-92
Identity = 176/337 (52.23%), Postives = 211/337 (62.61%), Query Frame = 3
Query:    6 TGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGVT*TPPY---------PSFQR*P*VQGQEDDSCS*QRLVPSWFRLGSQGPGNQ*QGVQCRTVGLLRKYEAGAITVKRAAANGTVVDHRFEVPTEPGSSFPDARRAGG 989
            T  GRGK  K DDGR RLT+ QEDQL +FINDEHKAG QVFRRTVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEM +AKRAED  LAV+VYMDE FVHQAHGS YSYFP++E+GVV+DG+GRTTGKG R+IMVHAITK GPL      +  PIEEGWFK  E   GK+      M DE+ AEF   +++          +GD H       +         P++   P  +G+              F    + P       +   V LLR + A +I V+R      VV++ FEVPTEPGSSFP   R GG
Sbjct:  156 TAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQAKLA---------KGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETN---TKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGG 470          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 8.330e-91
Identity = 175/338 (51.78%), Postives = 206/338 (60.95%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGVT*TPPY---------PSFQR*P*VQGQEDDSCS*QRLVPSWFRLGSQGPGNQ*QGVQCRTVGLLRKYEAGAITVKRAAANGTVVDHRFEVPTEPGSSFPDARRAGG 989
            TT  GRGK  K DDGR RLT+ QEDQL +FINDEHKAG QVFRRTVAEWM   CN + + SNR+  GLL RLGY+ RRGRIKTPPL+A+RLARIR FLVEMD+AKRAED  LAV+VY+D  FVHQAHGS YSYFP +E+ VV+DG+GRTTGKG RVIMVHAITK GPL         PIEEGWFK  E   GK+      M DE+ AEF   +++          +GD H       +         P++   P  +G+              F    + P       +   V LLR + A +I VKR      VV+  FEVPTEPGSSFP   R GG
Sbjct:   50 TTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAEGLLSRLGYKGRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYIDGSFVHQAHGSPYSYFPADEDEVVQDGIGRTTGKGLRVIMVHAITKWGPLAKLCV--GLPIEEGWFK--ETGSGKR-----EMEDEETAEFLWQAKLA---------KGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETN---TKKHNVDLLRMFGAKSIRVKRKEGEQGVVEENFEVPTEPGSSFPAGNREGG 365          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.580e-90
Identity = 177/342 (51.75%), Postives = 215/342 (62.87%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGVT*TPPY---------PSFQR*P*VQGQED----DSCS*QRLVPSWFRLGSQGPGNQ*QGVQCRTVGLLRKYEAGAITVKRAAANGTVVDHRFEVPTEPGSSFPDARRAGG 989
            TT  GRGK  K DDGR RLT+ QEDQL +FINDEHKAG QVFRRTVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLV M++AKRAED  LAV+VYMDE FVHQAHGS YSYFP++E+GVV+DG+GRTTGKG R+IMVHAITK GPL      +  PIEEGWFK  E   GK+      M DE+ AEF   +++          +GD H       +         P++   P  +G+      D+ S      S  ++            +   V LLR + A +I V+R      VV++ FEVPTEPGSSFP   R GG
Sbjct:  166 TTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLV-MNMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQAKLA---------KGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETN-------TKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGG 480          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5JWX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX3_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 6.050e-86
Identity = 145/218 (66.51%), Postives = 169/218 (77.52%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G 656
            TT  GRGK  K DDGR RLT+ QEDQL +FINDEHKAG QVFRRTVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEMD+AKRAED  LAV+VYMDE FVHQAHGS YSYFP++E+GVV+DG+GRTTGKG R+IMVHAITK GPL      +  PIEEGWFK  ++  GK+      M DE+ AEF   +++  G
Sbjct:   18 TTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHSTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFKETDS--GKK-----EMEDEETAEFLWQTKLATG 225          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 2.220e-83
Identity = 166/316 (52.53%), Postives = 199/316 (62.97%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGVT*TPPY---------PSFQR*P*VQGQEDDSCS*QRLVPSWFRLGSQGPGNQ*QGVQCRTVGLLRKYEAGAITVKRAAANGTVV 923
            TT  GRGK  K DDGR RLT+ QEDQL +FINDEHKAG QVFRRTVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEMD+AKRAED  LAV+VYMDE FVHQAHGS  SYFP++E+GVV+DG+GRTTGKG R+IMVHAITK GPL A+  Y  FPIEEGWFK  E   GK+      M DE+ AEF    ++          +GD H       +         P++   P  +G+              F    + P +     +   V LLR + A +I+VKR      VV
Sbjct:  128 TTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPCSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCYG-FPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQVKLA---------KGDNHAAMTDSMFMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHEFDAEVKVPESN---TKKHNVDLLRMFGAKSISVKRKEGEQGVV 421          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5KF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF49_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.450e-82
Identity = 151/285 (52.98%), Postives = 185/285 (64.91%), Query Frame = 3
Query:  162 CNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGVT*TPPY---------PSFQR*P*VQGQEDDSCS*QRLVPSWFRLGSQGPGNQ*QGVQCRTVGLLRKYEAGAITVKRAAANGTVVDHRFEVPTEPGSSFPDARRAGG 989
            C  +++ SNR+VGGLL RLGY+RRRGRIKTP LDA RLARIR FLVEMDIAKRAED  LAV+VYMDE FVHQAHGS YSYFP++E+GVV+DG+GRTTGKG R+IMVHAITK GPL      + FPIEEGWFK +   +GK+GGKDFN+ DE+ AEF   +++          +GD H       +         P++   P  +G++             F    + P       +   V LLR+Y   +I VKRAAANG VV  RFEVPT+ GS+ PDARR GG
Sbjct:  212 CGFEEQPSNRSVGGLLSRLGYKRRRGRIKTPRLDAARLARIRRFLVEMDIAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGFPIEEGWFKSKGGGKGKRGGKDFNLEDEETAEFLWQAKLA---------KGDYHAAMTDSMFMEWLERRLSPAYNAVPDFKGKKMILVRDNASYHQGFDAEVKVPETN---TKKYNVELLRRYGVRSIKVKRAAANGRVVQQRFEVPTDEGSTLPDARREGG 482          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5JWS3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS3_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 1.770e-82
Identity = 144/232 (62.07%), Postives = 169/232 (72.84%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENRRGKQGGKDFNMTDEKAAEFTVASQVG*G*LSRGYDRGDVHGV 698
            TT  GRGK  K DDGR RLT+ QEDQL +FINDEH+AG QV RRTVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTPPL+A+RLARIR FLVEM +AKRAED  LAV+VYMDE FVHQAHGS YSYFP++++GVV+DG+GRTTGKG R+IMVHAITK GPL      +  PIEEGWFK  E   GK+      M DE+ AEF   +++          +GD H  
Sbjct:   60 TTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHQAGRQVSRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDDDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQAKLA---------KGDYHAA 272          
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.800e-80
Identity = 136/220 (61.82%), Postives = 169/220 (76.82%), Query Frame = 3
Query:    3 TTGEGRGKVTKNDDGRLRLTQDQEDQLYKFINDEHKAGCQVFRRTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLVEMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRTTGKGSRVIMVHAITK*GPLVARGTYNDFPIEEGWFKREENR--RGKQGGKDFNMTDEKAAEFTVASQVG*G 656
            T G+GRGK T  DDGR  +T++QED L +FI  EH+AG QVFRRTV +++   C+   E+SNRAVGGLLQRLG++RRRGRIK PPL+ +R  RIRLFLV+MD+AKRAED  +AV+VYMDE FVHQAHGSAYSYFP+++ GVV+DG+GRTTGKG R++MVHAITK GPL        FPI EGWFK +ENR  + K G  DF M+DE+ AEF   +++  G
Sbjct:   34 TNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYL--ECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDKGVVQDGIGRTTGKGLRMMMVHAITKHGPLAE--LQEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATG 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1957.4958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNM6_ECTSI1.260e-9553.25DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE5.330e-9552.37DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE8.050e-9252.23DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE8.330e-9151.78DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE1.580e-9051.75DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5JWX3_9PHAE6.050e-8666.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KAU4_9PHAE2.220e-8352.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF49_9PHAE1.450e-8252.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS3_9PHAE1.770e-8262.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKV8_9PHAE1.800e-8061.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1957contigH-paniculata_contig1957:16571..17560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size990
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1957.4958.1prot_H-paniculata_contig1957.4958.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1957 16720..17067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929484.2230752-UTR-H-paniculata_contig1957:16570..167191622929484.2230752-UTR-H-paniculata_contig1957:16570..16719Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1957 16571..16719 +
1691480881.729478-UTR-H-paniculata_contig1957:16570..167191691480881.729478-UTR-H-paniculata_contig1957:16570..16719Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1957 16571..16719 +
1622929484.255384-UTR-H-paniculata_contig1957:17067..175601622929484.255384-UTR-H-paniculata_contig1957:17067..17560Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1957 17068..17560 +
1691480881.7509813-UTR-H-paniculata_contig1957:17067..175601691480881.7509813-UTR-H-paniculata_contig1957:17067..17560Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1957 17068..17560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929484.240288-CDS-H-paniculata_contig1957:16719..170671622929484.240288-CDS-H-paniculata_contig1957:16719..17067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1957 16720..17067 +
1691480881.737552-CDS-H-paniculata_contig1957:16719..170671691480881.737552-CDS-H-paniculata_contig1957:16719..17067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1957 16720..17067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1957.4958.1

>prot_H-paniculata_contig1957.4958.1 ID=prot_H-paniculata_contig1957.4958.1|Name=mRNA_H-paniculata_contig1957.4958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPPLDAKRLARIRLFLV
EMDIAKRAEDVVLAVLVYMDERFVHQAHGSAYSYFPTEENGVVEDGMGRT
TGKGSRVIMVHAITK*
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mRNA from alignment at H-paniculata_contig1957:16571..17560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1957.4958.1 ID=mRNA_H-paniculata_contig1957.4958.1|Name=mRNA_H-paniculata_contig1957.4958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at H-paniculata_contig1957:16571..17560+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACCACCGGCGAAGGAAGAGGCAAGGTCACCAAGAACGACGACGGCCGA CTGCGTCTCACCCAAGATCAGGAGGACCAGCTTTACAAGTTTATCAACGA CGAGCACAAAGCCGGGTGCCAAGTCTTTCGCCGTACGGTGGCGGAGTGGA TGATGGAACACTGCAACCCAGACAAGGAGGTGTCAAACCGCGCGGTAGGA GGGTTGCTGCAGAGGCTCGGTTATAGGCGTCGTAGGGGAAGGATCAAAAC ACCCCCGTTGGATGCCAAGAGGCTCGCGCGTATTCGTCTGTTTCTCGTTG AAATGGACATTGCGAAAAGGGCAGAGGATGTGGTGCTGGCAGTTCTTGTG TACATGGATGAGAGGTTTGTCCACCAGGCACACGGTTCCGCGTATTCATA CTTTCCTACTGAAGAGAATGGAGTTGTAGAGGATGGGATGGGTCGCACGA CGGGGAAGGGCTCACGCGTGATTATGGTGCATGCAATCACGAAGTAGGGC CCGTTGGTTGCGCGTGGTACCTATAATGACTTTCCAATCGAAGAGGGATG GTTTAAGCGTGAGGAAAACCGTAGGGGAAAGCAAGGAGGTAAGGACTTTA ACATGACAGATGAGAAAGCAGCAGAGTTTACTGTGGCAAGCCAAGTTGGC TAAGGGTGATTATCACGCGGCTATGACCGAGGCGATGTTCATGGAGTGAC TTGAACACCGCCTTACCCCAGCTTTCAACGCTAACCCTGAGTTCAGGGGC AAGAAGATGATTCTTGTTCTTGACAACGCCTCGTACCATCATGGTTTCGA CTCGGAAGTCAAGGTCCCGGAAACCAATAACAAGGTGTACAATGTCGGAC TGTCGGACTGTTGCGTAAGTATGAAGCGGGGGCAATCACGGTGAAGCGTG CCGCTGCCAACGGCACAGTTGTGGACCACCGCTTCGAGGTACCAACAGAA CCTGGTTCTTCGTTCCCCGATGCGAGGCGGGCGGGCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1957:16571..17560+

>mRNA_H-paniculata_contig1957.4958.1 ID=mRNA_H-paniculata_contig1957.4958.1|Name=mRNA_H-paniculata_contig1957.4958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig1957:16571..17560+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGAACACTGCAACCCAGACAAGGAGGTGTCAAACCGCGCGGTAGG
AGGGTTGCTGCAGAGGCTCGGTTATAGGCGTCGTAGGGGAAGGATCAAAA
CACCCCCGTTGGATGCCAAGAGGCTCGCGCGTATTCGTCTGTTTCTCGTT
GAAATGGACATTGCGAAAAGGGCAGAGGATGTGGTGCTGGCAGTTCTTGT
GTACATGGATGAGAGGTTTGTCCACCAGGCACACGGTTCCGCGTATTCAT
ACTTTCCTACTGAAGAGAATGGAGTTGTAGAGGATGGGATGGGTCGCACG
ACGGGGAAGGGCTCACGCGTGATTATGGTGCATGCAATCACGAAGTAGAT
GATGGAACACTGCAACCCAGACAAGGAGGTGTCAAACCGCGCGGTAGGAG
GGTTGCTGCAGAGGCTCGGTTATAGGCGTCGTAGGGGAAGGATCAAAACA
CCCCCGTTGGATGCCAAGAGGCTCGCGCGTATTCGTCTGTTTCTCGTTGA
AATGGACATTGCGAAAAGGGCAGAGGATGTGGTGCTGGCAGTTCTTGTGT
ACATGGATGAGAGGTTTGTCCACCAGGCACACGGTTCCGCGTATTCATAC
TTTCCTACTGAAGAGAATGGAGTTGTAGAGGATGGGATGGGTCGCACGAC
GGGGAAGGGCTCACGCGTGATTATGGTGCATGCAATCACGAAGTAG
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