mRNA_H-paniculata_contig19567.4956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19567.4956.1
Unique NamemRNA_H-paniculata_contig19567.4956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19567.4956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19567contigH-paniculata_contig19567:3174..3748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size575
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19567.4956.1prot_H-paniculata_contig19567.4956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19567 3340..3711 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.9415824-UTR-H-paniculata_contig19567:3173..33391622929483.9415824-UTR-H-paniculata_contig19567:3173..3339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19567 3174..3339 +
1691480881.6494398-UTR-H-paniculata_contig19567:3173..33391691480881.6494398-UTR-H-paniculata_contig19567:3173..3339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19567 3174..3339 +
1622929483.9737773-UTR-H-paniculata_contig19567:3711..37481622929483.9737773-UTR-H-paniculata_contig19567:3711..3748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19567 3712..3748 +
1691480881.6660268-UTR-H-paniculata_contig19567:3711..37481691480881.6660268-UTR-H-paniculata_contig19567:3711..3748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19567 3712..3748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.959557-CDS-H-paniculata_contig19567:3339..37111622929483.959557-CDS-H-paniculata_contig19567:3339..3711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19567 3340..3711 +
1691480881.6579273-CDS-H-paniculata_contig19567:3339..37111691480881.6579273-CDS-H-paniculata_contig19567:3339..3711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19567 3340..3711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19567.4956.1

>prot_H-paniculata_contig19567.4956.1 ID=prot_H-paniculata_contig19567.4956.1|Name=mRNA_H-paniculata_contig19567.4956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MNMSGPARTIAIITSSSSSSLFAPPAARSSVSTFTSTLRPRTKPCSFLFP
HSCAFSSNGLPPCRRSTVAFSCCITSIFSSSRSVSPPRMTTRDFLGIPGE
HSLIGCFVNAYELCQPCAQQSLI*
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mRNA from alignment at H-paniculata_contig19567:3174..3748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19567.4956.1 ID=mRNA_H-paniculata_contig19567.4956.1|Name=mRNA_H-paniculata_contig19567.4956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig19567:3174..3748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGGTGGATCCCCGCTCAGCGCCCGCCGAAACGCATAGAAGTGGGGGT
TCATTACCATTTTTCTTAACTCCGCGACTCCATTCGGCGGTAAACCCTCG
GTCCTCGCCTCTTATATCGCCGACTCCAACGTCGCTGCCCTCTCTCGTAT
CTCCTCGTCCCTTGTCATGAACATGTCTGGTCCTGCCCGCACCATTGCGA
TCATTACTTCATCTTCATCTTCCTCACTATTCGCACCACCCGCGGCTCGC
AGCAGCGTTTCCACATTTACTTCGACGCTTCGACCGCGCACCAAGCCTTG
CTCTTTCTTGTTTCCTCACTCCTGCGCCTTCTCCTCAAACGGGTTGCCGC
CGTGTCGCCGCTCCACCGTCGCCTTTAGCTGTTGCATCACGTCGATATTC
AGTTCCTCCCGCAGCGTCAGTCCGCCGAGAATGACCACCCGTGATTTCCT
CGGTATCCCTGGCGAACACTCGCTCATCGGGTGCTTCGTCAATGCCTACG
AACTTTGTCAGCCCTGCGCGCAACAGAGCCTCATTTAGTCTTGGCTCCCC
CTTACAGAATTTGGCATGAATCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig19567:3174..3748+

>mRNA_H-paniculata_contig19567.4956.1 ID=mRNA_H-paniculata_contig19567.4956.1|Name=mRNA_H-paniculata_contig19567.4956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig19567:3174..3748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACATGTCTGGTCCTGCCCGCACCATTGCGATCATTACTTCATCTTC
ATCTTCCTCACTATTCGCACCACCCGCGGCTCGCAGCAGCGTTTCCACAT
TTACTTCGACGCTTCGACCGCGCACCAAGCCTTGCTCTTTCTTGTTTCCT
CACTCCTGCGCCTTCTCCTCAAACGGGTTGCCGCCGTGTCGCCGCTCCAC
CGTCGCCTTTAGCTGTTGCATCACGTCGATATTCAGTTCCTCCCGCAGCG
TCAGTCCGCCGAGAATGACCACCCGTGATTTCCTCGGTATCCCTGGCGAA
CACTCGCTCATCGGGTGCTTCGTCAATGCCTACGAACTTTGTCAGCCCTG
CGCGCAACAGAGCCTCATTTAGATGAACATGTCTGGTCCTGCCCGCACCA
TTGCGATCATTACTTCATCTTCATCTTCCTCACTATTCGCACCACCCGCG
GCTCGCAGCAGCGTTTCCACATTTACTTCGACGCTTCGACCGCGCACCAA
GCCTTGCTCTTTCTTGTTTCCTCACTCCTGCGCCTTCTCCTCAAACGGGT
TGCCGCCGTGTCGCCGCTCCACCGTCGCCTTTAGCTGTTGCATCACGTCG
ATATTCAGTTCCTCCCGCAGCGTCAGTCCGCCGAGAATGACCACCCGTGA
TTTCCTCGGTATCCCTGGCGAACACTCGCTCATCGGGTGCTTCGTCAATG
CCTACGAACTTTGTCAGCCCTGCGCGCAACAGAGCCTCATTTAG
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