mRNA_H-paniculata_contig19564.4954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19564.4954.1
Unique NamemRNA_H-paniculata_contig19564.4954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19564.4954.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.040e-43
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 2 
Query:    2 CSVARPRRQGADLDELVNGASSFSTPMYSKFRESGVFVGGDAWYCCLEHPDSGLRSKLTLSCPLDRGRVRLRDGSKESNDTERLLDHAFGLLKQDPPVTPTLVTYKPTASPEEV 343
            C VARP R+GADLDELVNGASS + PMYSKFR++GVFVGGDAWYCCL+HP   LRSKL LSCP+ R     RD      DTERL DHA+GLLKQD  ++PTL+TYKPTA+ +EV
Sbjct: 1288 CCVARPSREGADLDELVNGASSLAAPMYSKFRDTGVFVGGDAWYCCLDHPSIALRSKLRLSCPMRR-----RDQPPSREDTERLADHAYGLLKQDSSLSPTLLTYKPTATVDEV 1396
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BLAST of mRNA_H-paniculata_contig19564.4954.1 vs. uniprot
Match: W7TNT9_9STRA (Actin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNT9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.640e-19
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 2 
Query:    2 CSVARPRRQGADLDELVNGASSFSTPMYSKFRESGVFVGGDAWYCCLEHPDSGLRSKLTLSCPLDRGRVRLRDGSKESNDTERLLDHAFGLLKQDPPVTPTLVTYKPTASPEEVWEVV 355
            C +ARP +  ADL  +V  AS  +  MY +FRE GVF+G DAWYC  +HPD  LR  L L  P DR R+ +R       D + LL + F   +     TP +VTYKPT++ +E  EVV
Sbjct:  920 CIIARPSKASADLTTIVQHASIKADAMYGRFREMGVFIGKDAWYCAFDHPDPVLRGSLKLEAPFDRDRL-IRPA-----DLKLLLKYVFEKCEVCLTKTPLVVTYKPTSTLKEREEVV 1031
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BLAST of mRNA_H-paniculata_contig19564.4954.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.610e-15
Identity = 49/114 (42.98%), Postives = 58/114 (50.88%), Query Frame = 2 
Query:    2 CSVARPRRQGADLDELVNGASSFSTPMYSKFRESGVFVGGDAWYCCLEHPDSGLRSKLTLSCPLDRGRVRLRDGSKESNDTERLLDHAFGLLKQDPPVTPTLVTYKPTASPEEV 343
            C VARP ++GADL ELVNGASS + PMYSKFRE                                              DT RL DHA+GLLKQD  ++PTL+TYKPTA+ +EV
Sbjct:  703 CCVARPSKEGADLGELVNGASSLAAPMYSKFREE---------------------------------------------DTVRLADHAYGLLKQDSSLSPTLLTYKPTATVDEV 771
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19564.4954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHM1_ECTSI1.040e-4368.42TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
W7TNT9_9STRA2.640e-1944.07Actin-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A6H5JDL2_9PHAE2.610e-1542.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19564contigH-paniculata_contig19564:336..1768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue9.4e-26
Seed eggNOG ortholog2880.D7FHM1
KEGG koko:K10798,ko:K11767
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
EC2.4.2.30
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Exons2
Model size570
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19564.4954.1prot_H-paniculata_contig19564.4954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19564 503..1689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.8216727-UTR-H-paniculata_contig19564:335..5021622929483.8216727-UTR-H-paniculata_contig19564:335..502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19564 336..502 -
1691480881.6166496-UTR-H-paniculata_contig19564:335..5021691480881.6166496-UTR-H-paniculata_contig19564:335..502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19564 336..502 -
1622929483.8691747-UTR-H-paniculata_contig19564:1689..17681622929483.8691747-UTR-H-paniculata_contig19564:1689..1768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19564 1690..1768 -
1691480881.6413195-UTR-H-paniculata_contig19564:1689..17681691480881.6413195-UTR-H-paniculata_contig19564:1689..1768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19564 1690..1768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.837152-CDS-H-paniculata_contig19564:502..8061622929483.837152-CDS-H-paniculata_contig19564:502..806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19564 503..806 -
1691480881.6262708-CDS-H-paniculata_contig19564:502..8061691480881.6262708-CDS-H-paniculata_contig19564:502..806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19564 503..806 -
1622929483.8556933-CDS-H-paniculata_contig19564:1669..16891622929483.8556933-CDS-H-paniculata_contig19564:1669..1689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19564 1670..1689 -
1691480881.6337864-CDS-H-paniculata_contig19564:1669..16891691480881.6337864-CDS-H-paniculata_contig19564:1669..1689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19564 1670..1689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19564.4954.1

>prot_H-paniculata_contig19564.4954.1 ID=prot_H-paniculata_contig19564.4954.1|Name=mRNA_H-paniculata_contig19564.4954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MYSKFRESGVFVGGDAWYCCLEHPDSGLRSKLTLSCPLDRGRVRLRDGSK
ESNDTERLLDHAFGLLKQDPPVTPTLVTYKPTASPEEVWEVVAPTAFTAG
ITVMFSR*
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mRNA from alignment at H-paniculata_contig19564:336..1768-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19564.4954.1 ID=mRNA_H-paniculata_contig19564.4954.1|Name=mRNA_H-paniculata_contig19564.4954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1433bp|location=Sequence derived from alignment at H-paniculata_contig19564:336..1768- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGTGGCGAGACCTAGGAGGCAAGGCGCGGACCTGGATGAGCTGG
TGAACGGGGCTTCGTCTTTTTCTACGCCGATGTACTCCAAGTTCCGAGAG
TGAGTGTGTGTGAAGTGGCTTGTGAATGGGGTAGTTCACTACAATACCAA
GACTAGAACACATGCTTATGCTATGGAATTGTGACGATATTTTCGTTTTC
CGTTCCTGTCTGGATTTAGCTTCAGCTGTCGAGACCTACCCGGGTCGGCG
TTCCTACTCAAGGTGAGGCCCTGTACCGGCATCTGTACCTGGTTGTTTGT
CGTGCCCTTGATGACCTTGTTTGTATCCGCCAGTAAGGTAGTAGCTCCAA
TCCCCACTCCCGCTCTAAGGTTCGCACGAGTGCGCCTTACAATGGATCAA
GTTGTGTAAAGTAGATTACCAGGTGTACTCATACGCGTTTGTCGATACGA
AATCGGTTGTACTGTACTTGGGTTGATGGCGATGATGTGTATTGTAGGGC
CAGCTGAGCAGGGAAGGCCAGCTAGTGGATTGGGTTGAGTGAGGTGCTTT
GGGGCACACAATTGGCAAACAAGTACCTTTTGGATGCGTTGCTGCTGGAG
GCACCGATCAGGACCGTTGAATAGGGGTCTTAGTAGCGGTCCCGACACGT
CGATCGCGAGGGTTGCCAACCGAAACCGTCATATATGATTCCAATTCCGT
AGCGACTAGTAGCAGAGGCCCCGAGCTACGCCCGCGCAGGTCGTGTATTG
TACTCTACCCCCGTTCGATGGCCCACTGCGCTCGGATAGAGTGTTGGCAG
ACATGTCCGTGAACATTGATATGTATAAATCACTTGAACACAGATTTGAT
AACTGTTCCGAAATAGCAAGAATAACATTAAGAATGACCTAGCAAACCAA
ATATATCCAAAAGAGATACATTACCATCGCCGGTGCTGTTTATCTGGGTG
TCTCTTTTACAGGAGCGGTGTGTTCGTGGGGGGGGATGCGTGGTACTGCT
GTCTGGAGCACCCAGATAGCGGGTTAAGGTCAAAGTTAACGCTATCGTGC
CCCCTCGATCGAGGAAGGGTGAGGCTGAGGGATGGGAGTAAGGAAAGCAA
CGACACGGAACGGTTGCTAGATCACGCGTTCGGGCTGTTGAAGCAGGACC
CACCGGTTACGCCAACGCTCGTGACGTACAAGCCGACGGCGAGCCCGGAG
GAGGTGTGGGAAGTGGTGGCCCCGACCGCGTTCACAGCGGGGATCACCGT
GATGTTCTCCCGGTAGTTGGAGCGCTTCGTGCCGACTACCTTCACTTTGC
CACCTCTCTGCAATTATCTTCCTCGCCTTGGTACCTTGGGGAGTGAAACC
TGAAGCCATGGGGTTCGAATTTCGAATTCAAAATCTCAGTCTTCATCGCA
GGCGACCGCACCGTAAAGACGGATGGTCATCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig19564:336..1768-

>mRNA_H-paniculata_contig19564.4954.1 ID=mRNA_H-paniculata_contig19564.4954.1|Name=mRNA_H-paniculata_contig19564.4954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig19564:336..1768- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTCCAAGTTCCGAGAATGTACTCCAAGTTCCGAGAGAGCGGTGTG
TTCGTGGGGGGGGATGCGTGGTACTGCTGTCTGGAGCACCCAGATAGCGG
GTTAAGGTCAAAGTTAACGCTATCGTGCCCCCTCGATCGAGGAAGGGTGA
GGCTGAGGGATGGGAGTAAGGAAAGCAACGACACGGAACGGTTGCTAGAT
CACGCGTTCGGGCTGTTGAAGCAGGACCCACCGGTTACGCCAACGCTCGT
GACGTACAAGCCGACGGCGAGCCCGGAGGAGGTGTGGGAAGTGGTGGCCC
CGACCGCGTTCACAGCGGGGATCACCGTGATGTTCTCCCGGTAGGAGCGG
TGTGTTCGTGGGGGGGGATGCGTGGTACTGCTGTCTGGAGCACCCAGATA
GCGGGTTAAGGTCAAAGTTAACGCTATCGTGCCCCCTCGATCGAGGAAGG
GTGAGGCTGAGGGATGGGAGTAAGGAAAGCAACGACACGGAACGGTTGCT
AGATCACGCGTTCGGGCTGTTGAAGCAGGACCCACCGGTTACGCCAACGC
TCGTGACGTACAAGCCGACGGCGAGCCCGGAGGAGGTGTGGGAAGTGGTG
GCCCCGACCGCGTTCACAGCGGGGATCACCGTGATGTTCTCCCGGTAG
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