mRNA_H-paniculata_contig1955.4952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1955.4952.1
Unique NamemRNA_H-paniculata_contig1955.4952.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1955.4952.1 vs. uniprot
Match: D8LT66_ECTSI (Probable 3\',5\'-cyclic phosphodiesterase pde-4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT66_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.830e-74
Identity = 110/125 (88.00%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:   10 ANWAQIAGERVQNYAIPDEGGAASPLFSPRMGMALTTTNTTPDSTHDWGYVYVIGGDSFVKTTDEDAGQRGGGYTNDVWVSEGSGWEIYSEGAKPMVKSTMQWDEVNPGHLPPADITYEEWIICQ 384
            ANWAQIAG+RVQNYAIPDEGGAA+PLFSPRMGMALTTTNTT DST+DWGY+YV+GGDSFVKTTDEDAG+RGGGYTNDVWV+EGSGWEIYSEG+KPM+KSTM+WDEVNPG LPPA +TYE+WIICQ
Sbjct:    7 ANWAQIAGDRVQNYAIPDEGGAANPLFSPRMGMALTTTNTTMDSTNDWGYLYVMGGDSFVKTTDEDAGERGGGYTNDVWVTEGSGWEIYSEGSKPMIKSTMEWDEVNPGRLPPAGVTYEDWIICQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1955.4952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT66_ECTSI1.830e-7488.00Probable 3\',5\'-cyclic phosphodiesterase pde-4 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1955contigH-paniculata_contig1955:13819..14707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue4.1e-63
Seed eggNOG ortholog2880.D8LT66
Hectar predicted targeting categoryother localisation
EggNOG OGs2CVJC@1,2RS54@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size403
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.5366604-CDS-H-paniculata_contig1955:13818..139531622929483.5366604-CDS-H-paniculata_contig1955:13818..13953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 13819..13953 +
1691480881.5013046-CDS-H-paniculata_contig1955:13818..139531691480881.5013046-CDS-H-paniculata_contig1955:13818..13953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 13819..13953 +
1622929483.5509017-CDS-H-paniculata_contig1955:14439..147061622929483.5509017-CDS-H-paniculata_contig1955:14439..14706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 14440..14706 +
1691480881.5106633-CDS-H-paniculata_contig1955:14439..147061691480881.5106633-CDS-H-paniculata_contig1955:14439..14706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 14440..14706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1955.4952.1prot_H-paniculata_contig1955.4952.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1955 13819..14706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1955.4952.1

>prot_H-paniculata_contig1955.4952.1 ID=prot_H-paniculata_contig1955.4952.1|Name=mRNA_H-paniculata_contig1955.4952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
CITANWAQIAGERVQNYAIPDEGGAASPLFSPRMGMALTTTNTTPDSTHD
WGYVYVIGGDSFVKTTDEDAGQRGGGYTNDVWVSEGSGWEIYSEGAKPMV
KSTMQWDEVNPGHLPPADITYEEWIICQARQRAG
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mRNA from alignment at H-paniculata_contig1955:13819..14707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1955.4952.1 ID=mRNA_H-paniculata_contig1955.4952.1|Name=mRNA_H-paniculata_contig1955.4952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=889bp|location=Sequence derived from alignment at H-paniculata_contig1955:13819..14707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTATTACAGCGAATTGGGCGCAAATAGCAGGCGAGCGGGTGCAGAATTA
TGCCATCCCCGACGAAGGTGGAGCTGCTAGTCCCTTGTTTTCGCCCAGGA
TGGGGATGGCACTAACTACTACCAACACCACCCCAGTGAGTCGCAATAGG
GTAAACTACAGTCAAAATCGCTTCAAAATCGTCATGAACGTCGAGCAGAT
GCGGCTGCTGCGGTGACGGTAGATGAAGGTCTGTATTTGGACCAACTGAG
CAGAAAATTGACGATCAACACAAACAGCACTACCTGTGTACATTGTGTGC
CAGCTTATCGGAACGGAAACACGGCAAAAGCCATCAACGTTCGTTTCTAG
GTATCTTTCTGGGAACGGGGCAATGTTAATAATCAGCACCGCCTTTGATG
TAGGGTTATTTACACCGCCTCTCGCCCATCGTTGGCTAAATCAACTCTAT
ATCCTACTTTGGTGCGGCAAGTGCCCGGTAAAAGTGTTACAAAGACCAAT
TTGTTCGCTCTAGATACATCGTATCACCCCGCCCACCATTCACGCAAGAC
CTGCTCTCAGGTTTTTCGCTCGCCCTTACTCCCTTCGTGCTTTTGGGCAA
CAACTTAAAACAACCACACAGGATTCGACGCACGACTGGGGTTATGTTTA
TGTTATCGGAGGGGACAGCTTTGTCAAGACCACCGACGAGGATGCCGGAC
AGCGCGGTGGAGGTTACACAAACGACGTTTGGGTATCCGAGGGTTCAGGT
TGGGAGATTTACTCCGAAGGAGCCAAGCCAATGGTCAAGTCGACAATGCA
GTGGGATGAGGTCAACCCTGGGCATTTGCCGCCTGCAGATATTACGTACG
AGGAGTGGATAATTTGCCAGGCGAGACAGAGGGCAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1955:13819..14707+

>mRNA_H-paniculata_contig1955.4952.1 ID=mRNA_H-paniculata_contig1955.4952.1|Name=mRNA_H-paniculata_contig1955.4952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig1955:13819..14707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTATTACAGCGAATTGGGCGCAAATAGCAGGCGAGCGGGTGCAGAATTA
TGCCATCCCCGACGAAGGTGGAGCTGCTAGTCCCTTGTTTTCGCCCAGGA
TGGGGATGGCACTAACTACTACCAACACCACCCCATGTATTACAGCGAAT
TGGGCGCAAATAGCAGGCGAGCGGGTGCAGAATTATGCCATCCCCGACGA
AGGTGGAGCTGCTAGTCCCTTGTTTTCGCCCAGGATGGGGATGGCACTAA
CTACTACCAACACCACCCCAGATTCGACGCACGACTGGGGTTATGTTTAT
GTTATCGGAGGGGACAGCTTTGTCAAGACCACCGACGAGGATGCCGGACA
GCGCGGTGGAGGTTACACAAACGACGTTTGGGTATCCGAGGGTTCAGGTT
GGGAGATTTACTCCGAAGGAGCCAAGCCAATGGTCAAGTCGACAATGCAG
TGGGATGAGGTCAACCCTGGGCATTTGCCGCCTGCAGATATTACGTACGA
GGAGTGGATAATTTGCCAGGCGAGACAGAGGGCAGGAGATTCGACGCACG
ACTGGGGTTATGTTTATGTTATCGGAGGGGACAGCTTTGTCAAGACCACC
GACGAGGATGCCGGACAGCGCGGTGGAGGTTACACAAACGACGTTTGGGT
ATCCGAGGGTTCAGGTTGGGAGATTTACTCCGAAGGAGCCAAGCCAATGG
TCAAGTCGACAATGCAGTGGGATGAGGTCAACCCTGGGCATTTGCCGCCT
GCAGATATTACGTACGAGGAGTGGATAATTTGCCAGGCGAGACAGAGGGC
AGGA
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