mRNA_H-paniculata_contig1955.4951.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1955.4951.1
Unique NamemRNA_H-paniculata_contig1955.4951.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A6H5KF81_9PHAE (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF81_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 1.170e-92
Identity = 274/549 (49.91%), Postives = 299/549 (54.46%), Query Frame = 2 
Query:  122 MQDQYLPVDVVKSTFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHLKKIMVDPAQEAPPSPRAGSATESISCGLDRLLLDAD---VGEXXXXXXXXXXXXXXXXXXXXAQSLSTVSFPDQTGPV-PTKIRSAPTSGSGNPPRSFEEAAAAALQPSEEATXXXXXXXXXXAIAMPKEVQARGSLVVSPPPAPLDAEAA--PVSVIPAVTL-SSKSPPKATIGRKTGPXXXXXXXXXXXXXXSGAGAVKLSGFQDPQATPTPGGRVAGAAPAAGGVDADLKLARKLQEEEDARASG-------SSLLAAATAEAFAMPPAPSSKEGGLGATAGGGSVYRSLNDSASKGSSYGXXXXXXXRSVGASSGFSSISSYXXXXXXXXXSFDKEKYKNVKGIGSDMLFGAQDDDPAEQHRRAMKTQEYSSSAAISSDMYFDRNADEGMGNA-SGGDGLGEMAEQIRLSAAVEFEGAAQAAAKLK 1723
            MQDQYLP DVVKSTFRRLRSK DNKVCFDC TRNPTW+S T+GIFICYDCSAVHR+MGVHVTFVRS ELDKWKP EME MKRGGNGNAR+FF +HG+TDMEK+EQKYHSRAAQMYR+HLKK M DP    PP        ++++ GLDRL+ D D                XXXXXXXXXX  S+   +   +     P+   +APTSGS           AAA  P+  A           A   P E + RGSL VSPP AP  A  A       P V L SSKSPP     RK G    XXXXXXXXXXXSG  AVKLSGF+D                     DADL LARKL                 +                                                XXXXXXX               XXXXXXXX SFDK KYKNVKGIGSDMLFGA+DDDP EQ RRAMK QEYS SAAISSDMY              GG G G+MA+QI  SAA      AQAA KLK
Sbjct:    1 MQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDNVADGLDRLMEDMDGKPAASAPAKGFTNGGXXXXXXXXXXXPSVDAAAAAAKFAQAFPSSHPAAPTSGSA-----AAGGHAAADVPAPPA-----------APVKPYEPKPRGSLSVSPPTAPAAAAGAVDEPKATPVVRLISSKSPPPRI--RKGGAKKMXXXXXXXXXXXSGGAAVKLSGFEDTTTAXXXXXXXXXXXXXXXXXDADLALARKLXXXXXXXXXXXXXXXRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFDKGKYKNVKGIGSDMLFGAKDDDPDEQARRAMKNQEYSQSAAISSDMYXXXXXXXXXXXXYDGGVGFGDMADQIAASAA------AQAAGKLK 525
[Close]
BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A835YU03_9STRA (Arf-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU03_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.390e-56
Identity = 96/161 (59.63%), Postives = 126/161 (78.26%), Query Frame = 2 
Query:  119 AMQDQYLPVDVVKSTFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHLKKIMV---DPAQEAPPSPR-AGSATES-ISCGLDRLLLDAD 586
            A  + Y+  D+VKSTFRRL++  DNKVCFDC TRNPTW+SVT+GIF+CYDCSAVHR+MGVH+TFVRS ELDKW+  E+++MKRGGN  ARA+F +HG++DM KT+ KY SRAA+ YR+HLK+++    DPA +   S   A  A E+ I+CGLDR++ D +
Sbjct:    2 ASSNDYVEADLVKSTFRRLQAHRDNKVCFDCPTRNPTWASVTYGIFLCYDCSAVHRNMGVHITFVRSVELDKWRQWELDSMKRGGNAAARAYFQSHGVSDMGKTDAKYRSRAAEAYRAHLKQLIAETPDPAADVWNSAHGARDADEAAIACGLDRIMRDIE 162
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BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A7S2SFF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFF1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.810e-43
Identity = 76/138 (55.07%), Postives = 102/138 (73.91%), Query Frame = 2 
Query:  113 VKAMQDQYLPVDVVKSTFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDME-KTEQKYHSRAAQMYRSHLKKIMVDPAQEAPPSP 523
            ++ M    +P +   S F+RL++K DN++CFDC TRNPTW+S TFG+F+C DCSA HR MGVHVTFVRS ELD+W   ++  M+ GGNGNA AFF +HG+ D+  KTE+KY S AA+ Y++HLKK++    +EAPP P
Sbjct:    8 LRTMAATCVPSEAKTSFFKRLKAKRDNRICFDCPTRNPTWASATFGVFLCLDCSAAHRRMGVHVTFVRSVELDEWTEKQLRTMEVGGNGNAAAFFRSHGVRDLHIKTEEKYQSSAARHYKNHLKKLL----EEAPPKP 141
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BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A7S2B6H1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6H1_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.350e-41
Identity = 83/155 (53.55%), Postives = 108/155 (69.68%), Query Frame = 2 
Query:  122 MQDQYLPVDVVKSTFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDME-KTEQKYHSRAAQMYRSHLKKIM-VDPAQEAPPSPRAGSATESISCGLDRLLLD 580
            M  +Y+  +V  S F++LR+K  NKVCFDC +RNPTW+S TFGIFIC DCSA HR MGVH+TFVRS ELD+W P +++ MK GGN NA  FF +HG+ DM  K EQKY S AA+ Y++HLKK+M  +  +E P  P+   + +     +D LLLD
Sbjct:    1 MNGKYVTQEVKNSAFKKLRTKGANKVCFDCSSRNPTWASATFGIFICLDCSASHRRMGVHITFVRSVELDEWTPDQLKMMKVGGNENAGTFFRSHGVRDMHIKHEQKYVSSAARQYKNHLKKLMSTEDVEEVPEEPQRKPSVD-----IDSLLLD 150
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BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A4D9D0S2_9STRA (Arf-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0S2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.690e-40
Identity = 75/146 (51.37%), Postives = 104/146 (71.23%), Query Frame = 2 
Query:  158 STFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHLKKIMVDP------AQEAPPSPRAGSATESISCGLDRLLL 577
            + F+R++S+ +N+VCFDC TRNPTW+S T+G+FICY+CSA HR++GVH+TFVRS +LD+W P ++  M+ GGN NA  FF  HG+T   K EQKY SRAA++Y++HL K++ D       A E PP     +A   + CGLD L+L
Sbjct:   12 AAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKAHLSKLVADKILMDANALEPPPPTDTVAA---VGCGLDNLML 154
[Close]
BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A2P5BH02_PARAD (Arf GTPase activating protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BH02_PARAD)

HSP 1 Score: 155 bits (393), Expect = 7.690e-39
Identity = 74/139 (53.24%), Postives = 97/139 (69.78%), Query Frame = 2 
Query:  158 STFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHL-KKIMVDPAQEAPPSPRAGSATESISCGLDRL 571
            + FR+L++K++NK+CFDC  +NPTW+SVT+GIF+C DCSAVHRS+GVH++FVRST LD W P +++ M  GGN  A  FF  HG TD  K E KY SRAA +YR  L K++    A+EAPPS    S +   S GL  +
Sbjct:   11 AVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEEAPPSLPVASQSGEASNGLSNI 149
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BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: UPI001FB0743C (probable ADP-ribosylation factor GTPase-activating protein AGD9 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0743C)

HSP 1 Score: 158 bits (399), Expect = 9.370e-39
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = 2 
Query:  155 KSTFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHL-KKIMVDPAQEA--PPSPRAGSATES 547
            ++ FR+LR+K++NK+CFDC T+NP W+SVT+GIF+C DCSAVHRS+GVH++FVRST LD W P +++ M  GGN  A AFF  HG TD  K E KY SRAA++YR  L K++    A EA  P SP+A  +TES
Sbjct:   10 EAIFRKLRTKSENKMCFDCNTKNPNWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNSRAHAFFKQHGWTDAGKIEAKYTSRAAELYRQLLTKEVAKSVADEAVLPSSPKASQSTES 143
[Close]
BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A452YQE6_AEGTS (Arf-GAP domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YQE6_AEGTS)

HSP 1 Score: 157 bits (396), Expect = 9.520e-39
Identity = 77/135 (57.04%), Postives = 95/135 (70.37%), Query Frame = 2 
Query:  158 STFRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHLKKIMVDPAQE-----APPSPRAGSATES 547
            S FR+LR+K+DNK+CFDC  +NPTW+SVT+G+F+C DCSAVHRS+GVHV+FVRST LD W P +++ M  GGN  A+AFF  HG TD  K E KY SRAA +YR  L K +   + E      PPSP A S T S
Sbjct:   29 SAFRKLRAKSDNKMCFDCNAKNPTWASVTYGVFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLKMMVYGGNNRAQAFFKQHGWTDGGKIEAKYTSRAADLYRQLLLKEVSKSSTEDGNNSGPPSPVAASQTSS 163
[Close]
BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A1D6GD40_MAIZE (ADP-ribosylation factor GTPase-activating protein AGD10 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6GD40_MAIZE)

HSP 1 Score: 149 bits (375), Expect = 1.600e-38
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 2 
Query:  164 FRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHLKK 484
            FRRL++K +NK+CFDC  +NPTW+SVT+GIF+C DCSAVHRS+GVH+TFVRST LD W P +++ M  GGN  A AFF  HG TD  K E KY SRAA++YR  L K
Sbjct:   20 FRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQMLNK 126
[Close]
BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Match: A0A4Y7IL30_PAPSO (Arf-GAP domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IL30_PAPSO)

HSP 1 Score: 155 bits (392), Expect = 2.570e-38
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 2 
Query:  164 FRRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVRSTELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMYRSHLKKIMVDPAQEA---PPSPRAGSATESIS 553
            FR+L+SK++NK+CFDC  RNPTW+SVT+G+F+C DCSAVHRS+GVH++FVRST LD W P +++ M  GGNG A  FF  HG TD EK+E KY SRAA++Y+  L K +   A E    P SP A  +   I+
Sbjct:   13 FRKLKSKSENKMCFDCNARNPTWASVTYGVFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNGRALTFFKQHGWTDGEKSETKYKSRAAELYKQLLSKEVTKSASEDVCFPSSPVASQSANPIN 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1955.4951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF81_9PHAE1.170e-9249.91Arf-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YU03_9STRA1.390e-5659.63Arf-GAP domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2SFF1_9STRA2.810e-4355.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B6H1_9STRA2.350e-4153.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9D0S2_9STRA2.690e-4051.37Arf-GAP domain-containing protein n=2 Tax=Monodops... [more]
A0A2P5BH02_PARAD7.690e-3953.24Arf GTPase activating protein n=2 Tax=Cannabaceae ... [more]
UPI001FB0743C9.370e-3956.72probable ADP-ribosylation factor GTPase-activating... [more]
A0A452YQE6_AEGTS9.520e-3957.04Arf-GAP domain-containing protein n=2 Tax=Aegilops... [more]
A0A1D6GD40_MAIZE1.600e-3862.62ADP-ribosylation factor GTPase-activating protein ... [more]
A0A4Y7IL30_PAPSO2.570e-3854.89Arf-GAP domain-containing protein n=3 Tax=Papaver ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1955contigH-paniculata_contig1955:3725..8446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.9
Seed ortholog evalue5e-81
Seed eggNOG ortholog2880.D8LT65
Preferred nameARFGAP2
KEGG koko:K11855,ko:K12493,ko:K16682
KEGG Pathwayko04144,ko04390,ko04391,ko04392,map04144,map04390,map04391,map04392
Hectar predicted targeting categorysignal peptide
GOsGO:0001654,GO:0001745,GO:0002790,GO:0003674,GO:0005096,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005793,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0007423,GO:0008047,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030234,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0035964,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048475,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060589,GO:0061024,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0706@2759
Ec32 ortholog descriptionArf GTPase activating protein
Ec32 orthologEc-12_005420.1
EC3.4.19.12
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko03036,ko04121,ko04131
Exons3
Model size2033
Cds size1758
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1955.4951.1prot_H-paniculata_contig1955.4951.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1955 3741..8187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.430278-UTR-H-paniculata_contig1955:3724..37401622929483.430278-UTR-H-paniculata_contig1955:3724..3740Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1955 3725..3740 +
1691480881.4482343-UTR-H-paniculata_contig1955:3724..37401691480881.4482343-UTR-H-paniculata_contig1955:3724..3740Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1955 3725..3740 +
1622929483.4884596-UTR-H-paniculata_contig1955:8187..84461622929483.4884596-UTR-H-paniculata_contig1955:8187..8446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1955 8188..8446 +
1691480881.4882138-UTR-H-paniculata_contig1955:8187..84461691480881.4882138-UTR-H-paniculata_contig1955:8187..8446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1955 8188..8446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.4411812-CDS-H-paniculata_contig1955:3740..39201622929483.4411812-CDS-H-paniculata_contig1955:3740..3920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 3741..3920 +
1691480881.461852-CDS-H-paniculata_contig1955:3740..39201691480881.461852-CDS-H-paniculata_contig1955:3740..3920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 3741..3920 +
1622929483.4557524-CDS-H-paniculata_contig1955:6262..65501622929483.4557524-CDS-H-paniculata_contig1955:6262..6550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 6263..6550 +
1691480881.4705286-CDS-H-paniculata_contig1955:6262..65501691480881.4705286-CDS-H-paniculata_contig1955:6262..6550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 6263..6550 +
1622929483.471805-CDS-H-paniculata_contig1955:6897..81871622929483.471805-CDS-H-paniculata_contig1955:6897..8187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 6898..8187 +
1691480881.4794023-CDS-H-paniculata_contig1955:6897..81871691480881.4794023-CDS-H-paniculata_contig1955:6897..8187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1955 6898..8187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1955.4951.1

>prot_H-paniculata_contig1955.4951.1 ID=prot_H-paniculata_contig1955.4951.1|Name=mRNA_H-paniculata_contig1955.4951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=586bp
MYRGRACLCVPVLLVISVWCPCRRGTYCSFRSVKAMQDQYLPVDVVKSTF
RRLRSKADNKVCFDCRTRNPTWSSVTFGIFICYDCSAVHRSMGVHVTFVR
STELDKWKPLEMEAMKRGGNGNARAFFHAHGITDMEKTEQKYHSRAAQMY
RSHLKKIMVDPAQEAPPSPRAGSATESISCGLDRLLLDADVGEGQANANG
SLAAVVGTGPGPQAQSLSTVSFPDQTGPVPTKIRSAPTSGSGNPPRSFEE
AAAAALQPSEEATAVAAAKVAAAAIAMPKEVQARGSLVVSPPPAPLDAEA
APVSVIPAVTLSSKSPPKATIGRKTGPKKMGARKLGAMKLGSGAGAVKLS
GFQDPQATPTPGGRVAGAAPAAGGVDADLKLARKLQEEEDARASGSSLLA
AATAEAFAMPPAPSSKEGGLGATAGGGSVYRSLNDSASKGSSYGYGNGEG
SRSVGASSGFSSISSYGGGGSSSSASFDKEKYKNVKGIGSDMLFGAQDDD
PAEQHRRAMKTQEYSSSAAISSDMYFDRNADEGMGNASGGDGLGEMAEQI
RLSAAVEFEGAAQAAAKLKVCILRRCFSHRAMCSL*
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mRNA from alignment at H-paniculata_contig1955:3725..8446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1955.4951.1 ID=mRNA_H-paniculata_contig1955.4951.1|Name=mRNA_H-paniculata_contig1955.4951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4722bp|location=Sequence derived from alignment at H-paniculata_contig1955:3725..8446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGATTTGATATACGATGTATAGAGGGAGGGCGTGCCTTTGTGTGCCCG
TTCTCTTGGTTATTTCTGTGTGGTGTCCGTGTCGTCGAGGCACGTATTGC
AGCTTTCGAAGCGTGAAAGCGATGCAGGACCAGTACTTACCGGTGGATGT
TGTCAAGAGCACATTCCGACGGTTACGGAGCAAGGCGGATAACAAGGTGC
AAGAGATGTCGGTATAAGCACCATCAAAATCTCATGTCGAACACCAAGTA
GAGAGCAAAGGATAGATGCAGGTGTTAGAAAGGGGGGACGGGGGGGGGGA
CACTTGGGGAAGGGGGCGGGGGGGGGGGAGATGGTGGCGGTACATTTTTA
GGTGGTGTAGTTAATACTGTGGTTCTTTCGTCCATCGGTTTGGAGTTAAT
TTGGTAATTGTTCACTTCGCCTGTCAATGCTTGTGGTAACGGAGCAGCAA
GATAGGAGAATAAATTTCGAAGAATTTCAGGCTATTTGTACGTGATGGAT
ATCCCTTGTTGTATATATGACGGTAGGATGTGCATCAGCTCTCTGTTCTG
TGCTGTAGAGGAAATATATTGAGATGGAAGACATGAGACGTCAACTATCA
CATACGAGTACAGTCTATCGTGGAGCGACCATAGCACAGAGCTAGACAAT
ATTTGCTTCTTTGTGACCTTCCTTCCTGTATCACATTTTTTAATATGTGG
TACAGTAGATGAGGTCCTGTATGCAGTCAAAAACTCATGATTCGAAGGGT
ATTTTTTAACCCGAGGTGGTGTAGGGTACGAATTCTAGATGAACCCGCCC
TCATAACGATAATATGGGCAGGGAGTTAACCGACATGACGCAACTCGTTA
GGGTCTTCCCTGCAGATGCAATCGTCTATTATATCCCTCTTACGCTGTCG
GTGAGTTAGTGAGCGATTGTATTGGCGTTTTCAAACAGCTTTTCCTTTTG
TACCCAACTACCTCCTGAACATTGGTTCTTCATGCAAGCGGGGCGAGTGA
CGGCGAGCGTAATGTTCTTCGGTCGAGGACGAGCACGAACTGCATGGGTG
TAGCCGTGACTCCTACTAAATTTACTACGTCTGAAAACTTTTTGCTTGGT
AAGGCGCGGTCGTCGTTTCGGAACAGCTTTTGAAGTCTGTACTCGAGTAA
TTTGTGAAACACAAATCTTGCAAGTGTATCAAGCTGTTGTGAATAGGTCG
TTAAGAACAACCGCAGACAGTATGGGGCGTATCATTGTTTTAACCACTAT
TTAGTAAAGTAAATAACTTTCAACCACTGATGGACTGATAGTGCCTGGGG
TCAAGCCATTTAAACCTGTTCTCAGTCTAGTCATCTCGAAAAACTGTTCC
TCCGATTTGACCTTTGATTATTGACATTTTCATCCCTACGCAAAAAGTGC
GTCTGTGCGCCCGAAACGTCGTATCATGTCGTACACACTTTTTTCGCTCA
TCGGTTTGTCTCATTTTTTCACGTGCAAGGAATGCCGTTGGTGTTATTCG
TATAGTTACGGGAGCCGTTGTTAGAGCGTCTCACTTAGGCACGAGATCAA
ATGCCAAAGTGACACGAAACATCTCAAATCACCACCAGACTGGTCCGAAG
CCTAATTTCGTCAGTTGGATGTTTTCAGCTCCCTTCCACGTGTATGTACA
GTACATATACTGTAGATGGAATGGTACATCTATAATCTGGATGAAAACCT
ATACAGAGGGATATGCGGGTACAGAAAATTCGACACAGACCACCGGCGAA
ACCGCTCCGCTAAGACTTGCTGCGATCATGATCAAGGAGCATGGAAGAAC
GCCCCACTACGATCACTAACTGACTCCGGTGACGTCGCCTGGAAATCACC
TGACCGGAAATTCGAGTCGGCGTGTCTGTCGATAAGTTGGAGGTCTAGAA
TATACTACATCTTACATCGTCAGTACCAAATCGATGGTCTTGAGGGAGGA
ACTCAATGCCGAAAGGGCGAAATAGTCTGTTTTCGGAGTTGTGTTTCTCT
CAACGCAAGTAATCACATAATTGATGGGTTCGTCTTCTCGTTGGTCAGAA
GAACGAGGTGGAGATAGCATATCAAAATTTCCGTGAGCGTTACTTTTGGG
TACGGTTTACGTTCCTACCATTTTTATTCAAGAGTCTCGTGTTATCTTGC
GCGTTGGCCGGGTATCGTGCAGTGTTCCTCTCTCCCTGTACTTATCCGCA
ACCGATCAGTTTGCCGCGTCTATTTTTTTTGTCAATTCCGAAAATCAATC
ATTTACCAATATTCAACTGACTTCTCATACCTCATTTTGTAATTGTTATT
TTGGCATATTTCTGTCTTTTTACCGTTGCCTCCCGCGCTATCCTATGAAC
ACGATTGCTTCAAATTCTCGTAGTGCAAGAGTCGCATTCGGCGCGTACAC
ACATCATGCATGTCTGATTGCAGTGGGTACACGAGTCCATGACAGATCAC
GAAAAAGTCAGCCATAAGTGATTGGTTTGTTTTGTCGTCTTGTCTGTTTC
TTTGTACCTCTCTTGCCCGCCCGCCACCGTGATGTCAGGTGTGCTTCGAT
TGTCGAACGCGCAACCCAACCTGGTCTTCTGTTACTTTCGGCATTTTCAT
CTGCTATGACTGCTCGGCGGTACATCGGAGCATGGGCGTACACGTGACGT
TCGTGCGGAGTACGGAGCTGGACAAATGGAAGCCATTGGAAATGGAGGCT
ATGAAGCGCGGGGGTAACGGCAACGCCCGCGCATTTTTCCACGCGCACGG
GATCACCGACATGGAAAAGACGGAACAGAAATATCACTCTCGCGCCGCCC
AGATGTACCGTTCTCACCTCAAGAAGGTTTGTGTCTGTGTATGCGTGTCT
GGTCGTTGTGAGCAGATTGTGTTTGCTTTTTTTTTTTCAAGGTGTCTTGA
CGTAGCGCAACGTAGCGTAGAAGTTGAGCATCGTGTTTTGTGGCTACCCA
TCCTAAAAGGAAATGTAGACGTACTTCGGTATGGAAGCATCGGATAGAGG
TTTTTGCCTTAACCTTCCGGGGGTTAAAAAAAAAATAAAAAAGGCAATAG
TCTTGATGTGATCATTGTTGGATAACTCAATCCAGCGTGTTGACCTTGAG
TGTAGACCAATGAAACGAAGATCCTATAACCTTTCCACCCATACTGTCAT
CTGTGTTGTGTTGCCTTCAATAGATCATGGTGGATCCTGCCCAGGAAGCC
CCGCCGTCTCCACGCGCCGGGTCGGCGACGGAGAGCATATCTTGCGGTCT
CGACCGCCTATTGCTCGATGCAGACGTCGGGGAAGGACAAGCAAACGCAA
ATGGCTCGCTGGCTGCGGTGGTGGGAACCGGACCTGGCCCGCAAGCACAA
TCGCTAAGCACGGTGTCTTTCCCTGATCAAACTGGTCCTGTTCCAACGAA
AATCCGGTCCGCCCCTACCTCTGGCTCAGGCAACCCCCCCCGCAGCTTTG
AGGAGGCCGCAGCTGCCGCTCTTCAGCCGTCGGAGGAGGCCACAGCTGTA
GCGGCGGCGAAAGTGGCCGCCGCCGCAATCGCCATGCCCAAGGAGGTGCA
GGCCCGAGGAAGCTTGGTTGTTTCCCCGCCGCCAGCGCCGTTGGACGCAG
AGGCCGCTCCCGTATCCGTGATCCCTGCGGTAACGCTGAGCTCAAAGTCT
CCCCCGAAAGCAACAATAGGCCGAAAGACCGGACCCAAAAAAATGGGGGC
GAGGAAACTGGGCGCTATGAAGCTCGGCAGCGGCGCAGGAGCGGTGAAGC
TCTCGGGTTTCCAGGATCCGCAGGCGACGCCGACGCCGGGTGGAAGAGTA
GCAGGAGCAGCGCCGGCGGCAGGCGGGGTAGACGCCGATTTGAAGCTGGC
CCGAAAGCTTCAGGAGGAGGAGGACGCGCGCGCGAGCGGGTCTTCTTTGC
TGGCTGCCGCGACGGCGGAAGCGTTTGCGATGCCTCCCGCTCCATCATCT
AAGGAGGGCGGACTTGGAGCAACGGCGGGGGGGGGTTCCGTGTATCGGTC
TCTAAACGACTCGGCGTCGAAGGGAAGCAGCTATGGTTACGGAAACGGTG
AAGGCAGTCGTTCGGTAGGAGCGTCGTCGGGGTTCTCGTCGATTTCGTCT
TATGGCGGGGGTGGCAGTAGCAGTAGTGCGTCTTTCGACAAGGAGAAGTA
TAAGAATGTTAAGGGGATCGGATCGGACATGCTCTTCGGAGCGCAGGACG
ATGACCCGGCGGAGCAGCACCGACGGGCGATGAAAACTCAGGAGTACAGC
TCCTCGGCCGCCATCAGTAGCGACATGTACTTTGATCGAAATGCGGATGA
GGGAATGGGCAATGCCAGCGGCGGCGACGGTCTCGGAGAGATGGCTGAGC
AGATCAGGTTATCGGCGGCAGTGGAGTTCGAGGGCGCCGCGCAGGCAGCG
GCTAAGCTGAAGGTGTGCATTTTGCGGCGTTGTTTTAGTCATCGAGCGAT
GTGCTCTTTGTGATGGCCATGTGCAGTAGTTGTATTTTGCAGATCTTGTA
GTTCGGGTTTTGTAATGGTGTTGGGTGCGCGGATCAGGGAACTTATGTTC
TTGCATCAGGAGGCCTGTGCCGGTCGGTGGTTGGGGGGGTGTTGACTTTC
TCCATCCGCATTTTCGTTGCTCCACGATCCGGGCACGGGTGCATTTTGTC
GTCAACATATTTTCTTGCTCCTGCTGACCACCTGTTTTGATGTGCCGCTT
TGCGCTATGTACAAAAGATAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1955:3725..8446+

>mRNA_H-paniculata_contig1955.4951.1 ID=mRNA_H-paniculata_contig1955.4951.1|Name=mRNA_H-paniculata_contig1955.4951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3516bp|location=Sequence derived from alignment at H-paniculata_contig1955:3725..8446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATAGAGGGAGGGCGTGCCTTTGTGTGCCCGTTCTCTTGGTTATTTC
TGTGTGGTGTCCGTGTCGTCGAGGCACGTATTGCAGCTTTCGAAGCGTGA
AAGCGATGCAGGACCAGTACTTACCGGTGGATGTTGTCAAGAGCACATTC
CGACGGTTACGGAGCAAGGCGGATAACAAGATGTATAGAGGGAGGGCGTG
CCTTTGTGTGCCCGTTCTCTTGGTTATTTCTGTGTGGTGTCCGTGTCGTC
GAGGCACGTATTGCAGCTTTCGAAGCGTGAAAGCGATGCAGGACCAGTAC
TTACCGGTGGATGTTGTCAAGAGCACATTCCGACGGTTACGGAGCAAGGC
GGATAACAAGGTGTGCTTCGATTGTCGAACGCGCAACCCAACCTGGTCTT
CTGTTACTTTCGGCATTTTCATCTGCTATGACTGCTCGGCGGTACATCGG
AGCATGGGCGTACACGTGACGTTCGTGCGGAGTACGGAGCTGGACAAATG
GAAGCCATTGGAAATGGAGGCTATGAAGCGCGGGGGTAACGGCAACGCCC
GCGCATTTTTCCACGCGCACGGGATCACCGACATGGAAAAGACGGAACAG
AAATATCACTCTCGCGCCGCCCAGATGTACCGTTCTCACCTCAAGAAGGT
GTGCTTCGATTGTCGAACGCGCAACCCAACCTGGTCTTCTGTTACTTTCG
GCATTTTCATCTGCTATGACTGCTCGGCGGTACATCGGAGCATGGGCGTA
CACGTGACGTTCGTGCGGAGTACGGAGCTGGACAAATGGAAGCCATTGGA
AATGGAGGCTATGAAGCGCGGGGGTAACGGCAACGCCCGCGCATTTTTCC
ACGCGCACGGGATCACCGACATGGAAAAGACGGAACAGAAATATCACTCT
CGCGCCGCCCAGATGTACCGTTCTCACCTCAAGAAGATCATGGTGGATCC
TGCCCAGGAAGCCCCGCCGTCTCCACGCGCCGGGTCGGCGACGGAGAGCA
TATCTTGCGGTCTCGACCGCCTATTGCTCGATGCAGACGTCGGGGAAGGA
CAAGCAAACGCAAATGGCTCGCTGGCTGCGGTGGTGGGAACCGGACCTGG
CCCGCAAGCACAATCGCTAAGCACGGTGTCTTTCCCTGATCAAACTGGTC
CTGTTCCAACGAAAATCCGGTCCGCCCCTACCTCTGGCTCAGGCAACCCC
CCCCGCAGCTTTGAGGAGGCCGCAGCTGCCGCTCTTCAGCCGTCGGAGGA
GGCCACAGCTGTAGCGGCGGCGAAAGTGGCCGCCGCCGCAATCGCCATGC
CCAAGGAGGTGCAGGCCCGAGGAAGCTTGGTTGTTTCCCCGCCGCCAGCG
CCGTTGGACGCAGAGGCCGCTCCCGTATCCGTGATCCCTGCGGTAACGCT
GAGCTCAAAGTCTCCCCCGAAAGCAACAATAGGCCGAAAGACCGGACCCA
AAAAAATGGGGGCGAGGAAACTGGGCGCTATGAAGCTCGGCAGCGGCGCA
GGAGCGGTGAAGCTCTCGGGTTTCCAGGATCCGCAGGCGACGCCGACGCC
GGGTGGAAGAGTAGCAGGAGCAGCGCCGGCGGCAGGCGGGGTAGACGCCG
ATTTGAAGCTGGCCCGAAAGCTTCAGGAGGAGGAGGACGCGCGCGCGAGC
GGGTCTTCTTTGCTGGCTGCCGCGACGGCGGAAGCGTTTGCGATGCCTCC
CGCTCCATCATCTAAGGAGGGCGGACTTGGAGCAACGGCGGGGGGGGGTT
CCGTGTATCGGTCTCTAAACGACTCGGCGTCGAAGGGAAGCAGCTATGGT
TACGGAAACGGTGAAGGCAGTCGTTCGGTAGGAGCGTCGTCGGGGTTCTC
GTCGATTTCGTCTTATGGCGGGGGTGGCAGTAGCAGTAGTGCGTCTTTCG
ACAAGGAGAAGTATAAGAATGTTAAGGGGATCGGATCGGACATGCTCTTC
GGAGCGCAGGACGATGACCCGGCGGAGCAGCACCGACGGGCGATGAAAAC
TCAGGAGTACAGCTCCTCGGCCGCCATCAGTAGCGACATGTACTTTGATC
GAAATGCGGATGAGGGAATGGGCAATGCCAGCGGCGGCGACGGTCTCGGA
GAGATGGCTGAGCAGATCAGGTTATCGGCGGCAGTGGAGTTCGAGGGCGC
CGCGCAGGCAGCGGCTAAGCTGAAGGTGTGCATTTTGCGGCGTTGTTTTA
GTCATCGAGCGATGTGCTCTTTGTGAATCATGGTGGATCCTGCCCAGGAA
GCCCCGCCGTCTCCACGCGCCGGGTCGGCGACGGAGAGCATATCTTGCGG
TCTCGACCGCCTATTGCTCGATGCAGACGTCGGGGAAGGACAAGCAAACG
CAAATGGCTCGCTGGCTGCGGTGGTGGGAACCGGACCTGGCCCGCAAGCA
CAATCGCTAAGCACGGTGTCTTTCCCTGATCAAACTGGTCCTGTTCCAAC
GAAAATCCGGTCCGCCCCTACCTCTGGCTCAGGCAACCCCCCCCGCAGCT
TTGAGGAGGCCGCAGCTGCCGCTCTTCAGCCGTCGGAGGAGGCCACAGCT
GTAGCGGCGGCGAAAGTGGCCGCCGCCGCAATCGCCATGCCCAAGGAGGT
GCAGGCCCGAGGAAGCTTGGTTGTTTCCCCGCCGCCAGCGCCGTTGGACG
CAGAGGCCGCTCCCGTATCCGTGATCCCTGCGGTAACGCTGAGCTCAAAG
TCTCCCCCGAAAGCAACAATAGGCCGAAAGACCGGACCCAAAAAAATGGG
GGCGAGGAAACTGGGCGCTATGAAGCTCGGCAGCGGCGCAGGAGCGGTGA
AGCTCTCGGGTTTCCAGGATCCGCAGGCGACGCCGACGCCGGGTGGAAGA
GTAGCAGGAGCAGCGCCGGCGGCAGGCGGGGTAGACGCCGATTTGAAGCT
GGCCCGAAAGCTTCAGGAGGAGGAGGACGCGCGCGCGAGCGGGTCTTCTT
TGCTGGCTGCCGCGACGGCGGAAGCGTTTGCGATGCCTCCCGCTCCATCA
TCTAAGGAGGGCGGACTTGGAGCAACGGCGGGGGGGGGTTCCGTGTATCG
GTCTCTAAACGACTCGGCGTCGAAGGGAAGCAGCTATGGTTACGGAAACG
GTGAAGGCAGTCGTTCGGTAGGAGCGTCGTCGGGGTTCTCGTCGATTTCG
TCTTATGGCGGGGGTGGCAGTAGCAGTAGTGCGTCTTTCGACAAGGAGAA
GTATAAGAATGTTAAGGGGATCGGATCGGACATGCTCTTCGGAGCGCAGG
ACGATGACCCGGCGGAGCAGCACCGACGGGCGATGAAAACTCAGGAGTAC
AGCTCCTCGGCCGCCATCAGTAGCGACATGTACTTTGATCGAAATGCGGA
TGAGGGAATGGGCAATGCCAGCGGCGGCGACGGTCTCGGAGAGATGGCTG
AGCAGATCAGGTTATCGGCGGCAGTGGAGTTCGAGGGCGCCGCGCAGGCA
GCGGCTAAGCTGAAGGTGTGCATTTTGCGGCGTTGTTTTAGTCATCGAGC
GATGTGCTCTTTGTGA
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